University of Rostock

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Rat connectome



Lateral habenular nucleus medial part left


Abbreviation
LHbM
Color       
Superior regionsLateral habenular nucleus

SynonymsAbbr.Language
Medial subregion of the lateral habenular nucleus  
Lateral habenular nucleus medial division  
Medial portion of the lateral habenula nucleus  
Lateral habenula medial zone Eng
Lateral habenular nucleus medial partLHbMEng
Medial subdivision of lateral habenular nucleusM-LHbEng
Medial part of the lateral habenular nucleusmLHbEng

SubregionsSide
Lateral habenular nucleus medial halfleft
Lateral habenular nucleus medial part marginal subnucleusleft
Lateral habenular nucleus medial part parvocellular subnucleusleft
Lateral habenular nucleus medial part superior subnucleusleft
Anterior subnucleus of the medial subdivision of the lateral habenular nucleusleft
Central subnucleus of the medial part of the lateral habenular nucleusleft
Lateral habenular nucleus medial borderleft
Lateral habenular nucleus medial most portionleft
Lateral habenular nucleus lateral part of the medial partleft

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC2
Central grayipsiCG2
Nucleus of DarkschewitschipsiDk3
Oculomotor nucleusipsi30
Periaqueductal grayipsiPAG3
Ventral periaqueductal grayipsiVPAG1
Tegmental areaipsiTGA2
Rostromedial tegmental nucleusipsiRMTg3
Rostromedial tegmental nucleus medial partipsiRMTgm2
Rostromedial tegmental nucleus caudolateral partipsiRMTgCL0.5
Substantia nigra compact partipsiSNC2
Ventral tegmental area A10ipsiVTA4
Interfascicular nucleusipsiIF4
Ventral tegmental area A10 parabrachial divisionipsiVTApb2
Ventral tegmental area A10 paranigral divisionipsiVTApn2
Ventral tegmental area A10 rostrocaudal partipsiVTArc2
Ventral tegmental area anterior partipsiVTAA-0.5
Ventral tegmental area posterior partipsiVTAP-0.5
Parabrachial pigmented nucleusipsiPBP4
Paranigral nucleusipsiPN4
Dorsal tegmental nucleusipsiDTg1
Edinger Westphal nucleusipsiEW3
Nucleus incertus pars compactaipsiNIc-3
Paramedian reticular nucleusipsiPMn1
Parabrachial nucleusipsiPB0
Mesencephalic trigeminal nucleusipsiMe51
Mesencephalic trigeminal nucleus rostral partipsiMe5R0
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC2.5
Dorsal raphe nucleus central partipsiDRcep2.5
Dorsal raphe nucleus dorsal partipsiDRD2
Dorsal raphe nucleus lateral wingipsiDRlw2.5
Dorsal raphe nucleus rostral partipsiDRr2.5
Dorsal raphe nucleus rostral tipipsiDRrt1
Dorsal raphe nucleus ventral partipsiDRV2
Dorsal raphe nucleus ventrolateral partipsiDRVL2
Rostral linear nucleus of the rapheipsiRLi1
Median raphe nucleusipsiMnR3
Median raphe nucleus rostrocaudal extentipsiMnRrc2
Paramedian raphe nucleusipsiPMnR3
Reticular thalamic nucleus medial partipsiRtm1
Interpeduncular nucleusipsiIP3
Interpeduncular nucleus rostral subnucleus central partipsiIPRce-0.5
MesencephaloncontraMEC2
Periaqueductal graycontraPAG3
Tegmental areacontraTGA2
Ventral tegmental area posterior partcontraVTAP-0.5
Mesencephalic trigeminal nucleuscontraMe50.5
Lateral habenular nucleus medial partcontraLHbM0.5
Interpeduncular nucleuscontraIP1

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Periaqueductal grayipsiPAG3
Ventromedial periaqueductal grayipsiVMPAG-0.5
Substantia nigra compact partipsiSNC1
Ventral tegmental area A10ipsiVTA2
Ventral tegmental area A10 lateral partipsiVTAL1
Interfascicular nucleusipsiIF3
Ventral tegmental area anterior partipsiVTAA3
Paranigral nucleusipsiPN1
Laterodorsal tegmental nucleusipsiLDTg3
Ventral tegmental nucleusipsiVTg3
Dorsal tegmental nucleusipsiDTg3
Nucleus incertus pars compactaipsiNIc3
Nucleus incertus pars dissipataipsiNId2
Dorsal raphe nucleusipsiDR3
Rostral linear nucleus of the rapheipsiRLi1
Median raphe nucleusipsiMnR3
Medial raphe nucleusipsiMeR3
Paramedian raphe nucleusipsiPMnR3
Basal forebrainipsiBAF-0.5
Diagonal band of BrocaipsiDBB2
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Medial septal nucleusipsiMS3
Substantia innominataipsiSI0.5
Substantia innominata dorsal partipsiSID-0.5
Lateral preoptic areaipsiLPO3
Lateral preoptic area caudal partipsiLPOc3
Lateral preoptic area rostral partipsiLPOr2
Medial preoptic areaipsiMPA3
Medial preoptic area periventricular partipsiMPApv1
Magnocellular preoptic nucleusipsiMCPO0.5
Ventrolateral preoptic nucleusipsiVLPO1
Dorsomedial preoptic regionipsidmPREO1
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar3
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR3
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp2
Lateral zoneipsiLHA1
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm2
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa2
Most anterior part of the parvalbumin-positive nucleus of the lateral hypothalamusipsiPV1ma-0.5
Tuberal nucleusipsiTU2
Anterior hypothalamic areaipsiAHA3
Anterior hypothalamic area lateral and dorsal to the suprachiasmatic nucleusipsiAHALdSCh-2
Area lateralis hypothalamicus posterior [Regio hypothalamus caudalis]ipsiDMrhc3
Area periventricularis hypothalamica communis [Regio hypothalamus caudalis]ipsiPeRHC3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Posterior hypothalamic nucleusipsiPH3
Ventromedial hypothalamic nucleusipsiVMH3
Periventricular zoneipsiPVZ3
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag3
Suprachiasmatic nucleusipsiSCh1
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Supraoptic nucleus magnocellular partipsiSOmag3
Premammillary nucleusipsiPMAN3
Supramammillar nucleusipsiSuM1
Tip of the internal capsuleipsitic0
Bed nucleus of the stria terminalisipsiBST4
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM2
Globus pallidusipsiGP1
Medial globus pallidusipsiMGP1
Medial globus pallidus rostral partipsiMGPr2
Ventral pallidumipsiVP3
Accumbens nucleusipsiAc3
Accumbens nucleus anteromedial partipsiAcAM1
Bed nucleus of the anterior commissureipsiBAC3
Anterior cingulate cortex layer 6ipsiACCL63
Cingulate cortex area 1 caudal partipsiCg1c0.5
Cingulate cortex area 2 caudal partipsiCg2c0.5
Prelimbic cortexipsiPrL3
Prelimbic cortex dorsal partipsiPrLd1
Prelimbic cortex ventral partipsiPrLv1
Infralimbic cortexipsiIL3
Frontal cortex area 2ipsiFr20.5
Insular cortexipsiICX3
Medial prefrontal cortexipsimPFC3
Interpeduncular nucleusipsiIP0.5
Interpeduncular nucleus rostral subnucleus midrostrocaudal partipsiIPRmrc3
Lateral septal nucleusipsiLS3
Lateral septal nucleus ventral partipsiLSV1
Septofimbrial nucleusipsiSFi3
Triangular septal nucleusipsiTS3
Central graycontraCG0.5
Periaqueductal graycontraPAG3
Substantia nigra compact partcontraSNC1
Interfascicular nucleuscontraIF3
Laterodorsal tegmental nucleuscontraLDTg3
Ventral tegmental nucleuscontraVTg3
Dorsal tegmental nucleuscontraDTg3
Nucleus incertus pars dissipatacontraNId1
Dorsal raphe nucleuscontraDR3
Medial raphe nucleuscontraMeR3
Nucleus of the horizontal limb of the diagonal bandcontraHDB3
Nucleus of the vertical limb of the diagonal bandcontraVDB3
Medial septal nucleuscontraMS3
Lateral preoptic areacontraLPO3
Medial preoptic areacontraMPA3
Lateral zonecontraLHA0
Lateral hypothalamic areacontraLH3
Tuberal nucleuscontraTU1
Anterior hypothalamic areacontraAHA3
Area lateralis hypothalamicus posterior [Regio hypothalamus caudalis]contraDMrhc3
Area periventricularis hypothalamica communis [Regio hypothalamus caudalis]contraPeRHC3
Posterior hypothalamic nucleuscontraPH3
Ventromedial hypothalamic nucleuscontraVMH3
Premammillary nucleuscontraPMAN3
Lateral habenular nucleus medial partcontraLHbM0.5
Tip of the internal capsulecontratic0
Bed nucleus of the stria terminaliscontraBST3
Medial globus palliduscontraMGP1
Ventral pallidumcontraVP3
Accumbens nucleuscontraAc3
Anterior cingulate cortex layer 6contraACCL61
Prelimbic cortexcontraPrL1
Infralimbic cortexcontraIL1
Insular cortexcontraICX1
Medial prefrontal cortexcontramPFC1
Lateral septal nucleuscontraLS3
Septofimbrial nucleuscontraSFi3
Triangular septal nucleuscontraTS3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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