University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Nucleus incertus left


Abbreviation
NI
Color       
Superior regionsPons

SynonymsAbbr.Language
N. incertus  
Nucleus incertusNIEng
Midline nucleus incertus Eng

SubregionsSide
Nucleus incertus pars compactaleft
Nucleus incertus pars dissipataleft
Nucleus incertus rostral partleft
Nucleus subincertusleft

Output to

NameSideAbbr.WeightDetails
Intermediate gray layer of the superior colliculusipsiInG0
Superior colliculus medial partipsimSC0
Pontine reticular nucleus oral partipsiPnO1
Diagonal band of BrocaipsiDBB-0.5
Medial septal nucleusipsiMS3
Medial preoptic areaipsiMPA1
Magnocellular preoptic nucleusipsiMCPO3
Dorsomedial hypothalamic nucleusipsiDMHy1
Lateral zoneipsiLHA1
Medial division of the hypothalamusipsiMdH0.5
Anterior hypothalamic areaipsiAHA1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM-0.5
Posterior hypothalamic areaipsiPHA1
Ventromedial hypothalamic nucleusipsiVMH1
Paraventricular hypothalamic nucleusipsiPa1
Suprachiasmatic nucleusipsiSCh3
Premammillary nucleus ventral partipsiPMV0.5
Anteroventral thalamic nucleusipsiAV0
Central medial thalamic nucleusipsiCM-0.5
Centrolateral thalamic nucleusipsiCL0
Paracentral thalamic nucleus caudal partipsiPC-c0
Paracentral thalamic nucleus rostral partipsiPC-r0
Parafascicular thalamic nucleus lateral partipsiPFL0
Parafascicular thalamic nucleus medial partipsiPFM0
Rhomboid thalamic nucleusipsiRh0
Mediodorsal thalamic nucleusipsiMD0
Intermediodorsal thalamic nucleusipsiIMD0
Submedius thalamic nucleusipsiSub0
Paratenial thalamic nucleusipsiPT0
Paraventricular thalamic nucleus anterior partipsiPVA1
Paraventricular thalamic nucleus medial partipsiPVM0
Paraventricular thalamic nucleus posterior partipsiPVP0
Reuniens thalamic nucleusipsiRe0
Reuniens thalamic nucleus caudomedial divisionipsiRecm1
Reunienes thalamic nucleus rostromedial divisionipsiRerm2
Reuniens thalamic nucleus rostrolateral divisionipsiRerl1
Ventral posterior thalamic complexipsiVPT0
Ventral posterior thalamic nucleus parvicellular partipsiVPPC0
Ventromedial thalamic nucleus caudal partipsiVMc0
Oval paracentral thalamic nucleusipsiOPC0
Medial forebrain bundleipsimfb-2
Amygdaloid complexipsiAC-0.5
Field CA1 of hippocampusipsiCA1-0.5
Anterior cingulate cortexipsiACC2
Infralimbic cortexipsiIL1
Medial agranular prefrontal cortexipsiAGm2
Intergeniculate leafipsiIGL-0.5
Interpeduncular nucleusipsiIP3
Interpeduncular nucleus apical subnucleusipsiIPA2
Interpeduncular nucleus caudal subnucleusipsiIPC2
Rostral part of the central interpeduncular nucleusipsiIPRcr2
Caudal part of the central interpeduncular nucleusipsiIPRcC1
Interpeduncular nucleus dorsolateral partipsiIPRdL-0.5
Interpeduncular nucleus intermediate subnucleusipsiIPI2
Interpeduncular nucleus intermediate subnucleus caudal partipsiIPIc1
Interpeduncular nucleus lateral subnucleusipsiIPL-0.5
Interpeduncular nucleus rostral subnucleusipsiIPR-0.5
Granulocellular part of the rostral interpeduncular nucleusipsiIPRgr2
Caudodorsal part of the rostral interpeduncular nucleusipsiIPRcad1
Interpeduncular nucleus rostral subnucleus central partipsiIPRce3
Interpeduncular nucleus rostrolateral subnucleusipsiIPRL-0.5
Lateral septal nucleus caudal part dorsal zoneipsiLScd3
Lateral septal nucleus caudal part ventral zoneipsiLScv3
Lateral septal nucleus rostral part dorsolateral zoneipsiLSrdl1
Lateral septal nucleus rostral part medial zoneipsiLSrm1
Lateral septal nucleus rostral part ventrolateral zoneipsiLSrvl1
Lateral septal nucleus ventral partipsiLSV1
Intermediate gray layer of the superior colliculuscontraInG0
Superior colliculus medial partcontramSC2
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Amygdaloid complexcontraAC-0.5
Anterior cingulate cortexcontraACC1
Infralimbic cortexcontraIL1
Medial agranular prefrontal cortexcontraAGm1
Interpeduncular nucleuscontraIP3
Interpeduncular nucleus dorsolateral partcontraIPRdL0.5
Interpeduncular nucleus lateral subnucleuscontraIPL0.5
Interpeduncular nucleus rostral subnucleuscontraIPR0.5
Interpeduncular nucleus rostrolateral subnucleuscontraIPRL0.5

Input from

NameSideAbbr.WeightDetails
Peduncularpontine nucleusipsiPPN-0.5
Reticulotegmental nucleusipsiRETn-0.5
Pontine reticular nucleus oral part dorsoventral partipsiPnOdv-0.5
Pontine reticular nucleus oral part rostrocaudal partipsiPnOrc-0.5
11 beta hydroxysteroiddehydrogenase type-2 cellsipsiSolHSD20
Dorsal raphe nucleus caudal partipsiDRC3
Dorsal raphe nucleus rostral partipsiDRr2
Median raphe nucleusipsiMnR3
Paramedian raphe nucleusipsiPMnR-0.5
Diagonal band of BrocaipsiDBB-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the horizontal limb of the diagonal band caudolateral partipsiHDBCL2
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Septal-diagonal band of Broca complexipsiDBBs3
Medial septal nucleusipsiMS1
Lateral preoptic areaipsiLPO2
Dorsomedial hypothalamic nucleusipsiDMHy0
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar0.5
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR0.5
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp0
Lateral hypothalamic areaipsiLH-0.5
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm0
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa1
Posterior hypothalamic nucleusipsiPH-0.5
Posterior hypothalamic nucleus caudal partipsiPHCa1
Posterior hypothalamic nucleus rostral partipsiPHRo1
Incerto hypothalamic areaipsiicHYPO1
Supramammillar nucleusipsiSuM-0.5
Zona incertaipsiZI-0.5
Lateral habenular nucleusipsiLHb-0.5
Bed nucleus of the stria terminalisipsiBST0.5
Medial orbital cortexipsiMO2
Ventral orbital cortexipsiVO0
Interpeduncular nucleusipsiIP-0.5
Interpeduncular nucleus rostral subnucleus midrostrocaudal partipsiIPRmrc4
Interpeduncular nucleus rostral subnucleus central partipsiIPRce3
Lateral septal nucleusipsiLS1
Lateral septal nucleus dorsal partipsiLSD1
Lateral septal nucleus intermediate partipsiLSI2
Lateral septal nucleus medial partipsiLSM-0.5
Lateral septal nucleus ventral partipsiLSV2
Posterior septal complexipsiPSC3
Septofimbrial nucleusipsiSFi1
Septofimbrial nucleus rostral partipsiSFir1
Triangular septal nucleusipsiTS1
Nucleus of the horizontal limb of the diagonal bandcontraHDB1
Nucleus of the vertical limb of the diagonal bandcontraVDB-0.5
Medial septal nucleuscontraMS-0.5
Dorsomedial hypothalamic nucleuscontraDMHy0
Posterior hypothalamic nucleus caudal partcontraPHCa0.5
Posterior hypothalamic nucleus rostral partcontraPHRo0.5
Lateral septal nucleuscontraLS-0.5
Lateral septal nucleus intermediate partcontraLSI-0.5
Septofimbrial nucleuscontraSFi-0.5
Triangular septal nucleuscontraTS-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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