University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Paramedian raphe nucleus left


Abbreviation
PMnR
Color       
Superior regionsRaphe nuclei

SynonymsAbbr.Language
Nuclei pararaphealesPRA 
 PMREng
Paramedian raphe nucleusPmREng
Paramedian raphe nucleusPMnREng

Output to

NameSideAbbr.WeightDetails
Substantia nigra compact partipsiSNC0
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 lateral partipsiVTAL3
Ventral tegmental area A10 middle thirdipsiVTAmit-0.5
Nucleus incertusipsiNI-0.5
Dorsomedial tegmental areaipsiDMTg-0.5
Gigantocellular reticular nucleusipsiGi1
Gigantocellular reticular nucleus alpha partipsiGiA1
Gigantocellular reticular nucleus ventral partipsiGiV1
Hypoglossal nucleusipsi12S1
Dorsal raphe nucleus dorsal partipsiDRD3
Dorsal raphe nucleus lateral wingipsiDRlw2
Dorsal raphe nucleus rostral partipsiDRr3
Dorsal raphe nucleus ventral partipsiDRV3
Raphe magnus nucleusipsiRMg1
Raphe pallidus nucleusipsiRPa3
Medial septal nucleusipsiMS-0.5
Lateral hypothalamic area anterior partipsiLHAa0
Lateral hypothalamic area posterior partipsiLHAp1
Tuberal region of lateral hypothalamusipsiTuLH1
Medial zoneipsiMHA0
Posterior hypothalamic nucleusipsiPH3
Anteroventral thalamic nucleusipsiAV0
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleus caudal partipsiPC-c1
Paracentral thalamic nucleus rostral partipsiPC-r0
Parafascicular thalamic nucleus lateral partipsiPFL3
Parafascicular thalamic nucleus medial partipsiPFM2
Rhomboid thalamic nucleusipsiRh0
Mediodorsal thalamic nucleusipsiMD3
Intermediodorsal thalamic nucleusipsiIMD0
Submedius thalamic nucleusipsiSub0
Paratenial thalamic nucleusipsiPT0
Paraventricular thalamic nucleus anterior partipsiPVA1
Paraventricular thalamic nucleus medial partipsiPVM0
Paraventricular thalamic nucleus posterior partipsiPVP1
Reuniens thalamic nucleusipsiRe0
Ventral posterior thalamic nucleus parvicellular partipsiVPPC0
Ventromedial thalamic nucleus caudal partipsiVMc2
Oval paracentral thalamic nucleusipsiOPC0
HabenulaipsiHAB-0.5
Lateral habenular nucleusipsiLHb-0.5
Lateral habenular nucleus lateral partipsiLHbL1
Lateral habenular nucleus medial partipsiLHbM3
Medial habenular nucleusipsiMHb0.5
Lateral accumbens shellipsiAcbShl0.5
Medial accumbens shellipsiAcbShm2
Dorsal hippocampusipsiHIPPd3
Interpeduncular nucleusipsiIP-0.5
Interpeduncular nucleus central subnucleusipsiIPRc3
Interpeduncular nucleus intermediate subnucleusipsiIPI3
Interpeduncular nucleus lateral subnucleusipsiIPL0
Caudal two third part of the rostral interpeduncular nucleusipsiIPRCtt3
Interpeduncular nucleus rostral subnucleus rostral partipsiIPRr0
Interpeduncular nucleus dorsomedial partipsiIPdm0
Lateral septal nucleusipsiLS-0.5
Gray matter of spinal cordipsiGMES1
Cervical segment 5ipsiCS51
Lumbar segment 2ipsiL21
Ventral tegmental area A10 lateral partcontraVTAL3
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus alpha partcontraGiA1
Gigantocellular reticular nucleus ventral partcontraGiV1
Hypoglossal nucleuscontra12S1
Dorsal raphe nucleus lateral wingcontraDRlw2
Raphe magnus nucleuscontraRMg1
Raphe pallidus nucleuscontraRPa2
Posterior hypothalamic nucleuscontraPH2
Gray matter of spinal cordcontraGMES1
Cervical segment 5contraCS51
Lumbar segment 2contraL21

Input from

NameSideAbbr.WeightDetails
Ventral tegmental area A10ipsiVTA4
Edinger Westphal nucleusipsiEW1
Nucleus incertus pars compactaipsiNIc3
Nucleus of the horizontal limb of the diagonal bandipsiHDB-0.5
Nucleus of the vertical limb of the diagonal bandipsiVDB-0.5
Medial septal nucleusipsiMS-0.5
Incerto hypothalamic areaipsiicHYPO-0.5
HabenulaipsiHAB3
Lateral habenular nucleusipsiLHb3
Lateral habenular nucleus central partipsiLHbc3
Centrolateral part of the lateral habenular nucleusipsiLHbcL3
Lateral habenular nucleus lateral partipsiLHbL3
Lateral habenular nucleus lateral part magnocellular subnucleusipsiLHbLMc3
Lateral habenular nucleus medial partipsiLHbM3
Lateral habenular nucleus medial part marginal subnucleusipsiLHbMMg2
Lateral habenular nucleus medial part parvocellular subnucleusipsiLHbMPc2
Anterior subnucleus of the medial subdivision of the lateral habenular nucleusipsiLHbAM2
Central subnucleus of the medial part of the lateral habenular nucleusipsiLHbMCe2
Lateral habenular nucleus oval subnucleusipsiLHbos2
Medial habenular nucleusipsiMHb1
Interpeduncular nucleus central subnucleusipsiIPRc1
Interpeduncular nucleus dorsolateral partipsiIPRdL3
Interpeduncular nucleus intermediate subnucleusipsiIPI3
Interpeduncular nucleus lateral halfipsiIPLh3
Interpeduncular nucleus lateral subnucleus medial halfipsiIPLm1
Interpeduncular nucleus rostral subnucleusipsiIPR3
Interpeduncular nucleus rostral subnucleus midrostrocaudal partipsiIPRmrc-0.5
Interpeduncular nucleus rostrocaudal axisipsiIPrca3
Interpeduncular nucleus dorsomedial partipsiIPdm3
Lateral septal nucleusipsiLS-0.5
Lateral septal nucleus intermediate partipsiLSI-0.5
Septofimbrial nucleusipsiSFi-0.5
Triangular septal nucleusipsiTS-0.5
Ventral tegmental area A10contraVTA4
Lateral habenular nucleus central partcontraLHbc1
Interpeduncular nucleus dorsolateral partcontraIPRdL3
Interpeduncular nucleus dorsomedial partcontraIPdm3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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