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Rat connectome



Nucleus incertus pars compacta left


Abbreviation
NIc
Color       
Superior regionsNucleus incertus

SynonymsAbbr.Language
Nucleus incertus pars compactaNIcEng
Nucleus incertus compact part Eng

SubregionsSide
Rostrocaudal extent of the nucleus incertus pars compactaleft

Output to

NameSideAbbr.WeightDetails
Central gray pons partipsiCGP2
Retrolemniscal nucleusipsiRL1
3rd oculomotor nucleusipsiOCS30
4th oculomotor nucleusipsiOCS40
Medial accessory oculomotor nucleusipsiMA3-0.5
Periaqueductal grayipsiPAG1
Dorsolateral periaqueductal grayipsiDLPAG-0.5
Periaqueductal gray dorsal partipsiPAGd0.5
Periaqueductal gray rostral dorsal partipsiPAGdr1
Ventrolateral periaqueductal grayipsiVLPAG-3
Red nucleusipsiR0
Dorsal cortex of the inferior colliculusipsiDCIC1
Superior colliculusipsiSC-0.5
Superior colliculus inner gray layeripsiSCiGL-0.5
Superficial gray layer of the superior colliculusipsiSuG-0.5
Intermediate gray layer of the superior colliculusipsiInG-0.5
Substantia nigra compact partipsiSNC2
Substantia nigra reticular partipsiSNR0
Ventral tegmental area A10ipsiVTA3
Interfascicular nucleusipsiIF3
Caudal linear nucleus of the rapheipsiCLi2
Retrorubral nucleusipsiRR3
Laterodorsal tegmental nucleusipsiLDTg2
Ventral tegmental nucleusipsiVTg3
Dorsal tegmental nucleusipsiDTg1
Edinger Westphal nucleusipsiEW1
Locus coeruleusipsiLC2
Nucleus incertus pars dissipataipsiNId1
Nucleus subincertusipsiNSI3
Reticulotegmental nucleusipsiRETn0.5
Prepositus nucleusipsiPr3
Mesencephalic reticular formationipsiMRF0.5
Deep mesencephalic nucleusipsiDpMe0.5
Pontine reticular nucleus oral partipsiPnO3
Pontine reticular nucleus caudal partipsiPNC3
Cuneiforme nucleusipsiCnF3
Parabrachial nucleusipsiPB3
Dorsal raphe nucleusipsiDR3
Linear nucleus of the rapheipsiLIR0
Median raphe nucleusipsiMnR3
Superior central raphe nucleus lateral partipsiCSl1
Superior central raphe nucleus medial partipsiCSm3
Paramedian raphe nucleusipsiPMnR3
Pontine raphe nucleusipsiPnR3
Raphe magnus nucleusipsiRMg1
Cuneate nucleusipsiCu0.5
Inferior olive cap of Kooy of the medial nucleusipsiIOK3
Paragigantocellular reticular nucleusipsiPGi0.5
Dorsal endopiriform nucleusipsiDEn1
Diagonal band of BrocaipsiDBB3
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Medial septal nucleusipsiMS3
Basal nucleus MeynertipsiB3
Substantia innominataipsiSI1
Nucleus of the ansa lenticularisipsiAL3
Lateral preoptic areaipsiLPO3
Anterodorsal preoptic nucleusipsiADP2
Medial preoptic nucleusipsiMPO1
Subcommissural organipsiSCO1
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp3
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR1
Lateral hypothalamic areaipsiLH3
Anterior hypothalamic areaipsiAHA3
Anterior hypothalamic nucleusipsiAHn1
Dorsomedial hypothalamic nucleus anterior partipsiDMA1
Posterior hypothalamic areaipsiPHA1
Posterior hypothalamic area dorsal partipsiPHD3
Paraventricular hypothalamic nucleusipsiPa0.5
Suprachiasmatic nucleus ventral divisionipsiSChv3
Lateral mammillary nucleusipsiLM1
Medial mammillary nucleusipsiMMn0
Premammillary nucleus dorsal partipsiPMD3
Premammillary nucleus ventral partipsiPMV3
Supramammillar nucleus lateral partipsiSuML3
Retrochiasmatic areaipsiRCh1
Central medial thalamic nucleusipsiCM0.5
Centrolateral thalamic nucleusipsiCL-0.5
Parafascicular thalamic nucleusipsiPF-0.5
Rhomboid thalamic nucleusipsiRh3
Mediodorsal thalamic nucleus central partipsiMDC0
Mediodorsal thalamic nucleus lateral partipsiMDL3
Mediodorsal thalamic nucleus medial partipsiMDM2
Mediodorsal thalamic nucleus paralaminar partipsiMDPL-0.5
Perireuniensis nucleusipsiPReu2
Submedius thalamic nucleus dorsal partipsiSubD1
Submedius thalamic nucleus ventral partipsiSubV1
Paratenial thalamic nucleusipsiPT3
Paraventricular thalamic nucleusipsiPV1
Paraventricular thalamic nucleus anterior partipsiPVA1
Paraventricular thalamic nucleus middle divisionipsiPVMiD1
Paraventricular thalamic nucleus posterior partipsiPVP3
Reuniens thalamic nucleusipsiRe3
Nucleus reuniens median partipsiREm2
Ventrolateral thalamic nucleusipsiVL0
Ventral posterior thalamic complexipsiVPT0
Ventral posterior thalamic nucleus parvicellular partipsiVPPC0
Scaphoid thalamic nucleusipsiSc0.5
Lateral subparafascicular thalamic nucleusipsiSPFL-0.5
Subparafascicular thalamic nucleus magnocellular partipsiSPFm0.5
Subparafascicular thalamic nucleus medial partipsiSPFme-0.5
Zona incertaipsiZI3
Lateral habenular nucleusipsiLHb3
Lateral habenular nucleus medial partipsiLHbM3
Medial habenular nucleusipsiMHb1
Medial habenular nucleus lateral partipsiMHbL1
Anterior pretectal nucleusipsiAPT3
Pineal glandipsiPi1
Amygdaloid complexipsiAC-0.5
Accessory basal nucleusipsiAB3
Basal nucleus magnocellular partipsiBmc3
Basolateral amygdaloid nucleusipsiBL1
Posterior basolateral nucleusipsiBLP0.5
Posterior basomedial nucleusipsiBMP0.5
Lateral amygdaloid nucleusipsiLA1
Bed nucleus of the stria terminalisipsiBST3
Cortical amygdaloid nucleusipsiCAn3
Posterior amygdaloid nucleus medial partipsiCOApm-3
Medial amygdaloid nucleusipsiMe-0.5
Medial amygdaloid nucleus anterodorsal partipsiMeAD3
Medial amygdaloid nucleus posterodorsal partipsiMePD3
Amygdalohippocampal areaipsiAHi3
ClaustrumipsiCl2
HippocampusipsiHIPP3
Dorsal hippocampusipsiHIPPd1
Dentate gyrusipsiDG-3
Field CA1 of hippocampusipsiCA11
Field CA2 of hippocampusipsiCA20.5
Field CA3 of hippocampusipsiCA30.5
SubiculumipsiS3
Ventral hippocampusipsiHIPPv3
PresubiculumipsiPrS0.5
Entorhinal cortexipsiEnt-0.5
Lateral entorhinal cortexipsiLEnt1
Medial entorhinal cortex ventral partipsiMEntV1
Piriform cortexipsiPir-0.5
Retrosplenial dorsalipsiRSd1
Retrosplenial ventral partipsiRSPv2
Retrosplenial agranular cortexipsiRSA1
Cingulate cortexipsiCg-0.5
Cingulate cortex area 1 caudal partipsiCg1c2
Cingulate cortex area 1 rostral partipsiCg1r2
Cingulate cortex area 2 caudal partipsiCg2c2
Cingulate cortex area 2 rostral partipsiCg2r-3
Frontal association cortexipsiFrA-0.5
Frontal cortex area 2ipsiFr23
Temporal association area 2ipsiTe2-0.5
Temporal association area 3ipsiTe3-0.5
Perirhinal cortexipsiA35-0.5
Lateral agranular prefrontal cortexipsiAGl0.5
Medial prefrontal cortexipsimPFC2
Medial agranular prefrontal cortexipsiAGm1
Nucleus of the posterior commissureipsiPCom3
Precommissural nucleusipsiPrC1
Lateral geniculate complexipsiLG0
Medial geniculate nucleusipsiMG0
Interpeduncular nucleusipsiIP-0.5
Interpeduncular nucleus apical subnucleusipsiIPA3
Interpeduncular nucleus central subnucleusipsiIPRc1
Interpeduncular nucleus dorsal subnucleusipsiIPRd3
Interpeduncular nucleus dorsomedial subnucleusipsiIPDM3
Interpeduncular nucleus intermediate subnucleusipsiIPI0.5
Interpeduncular nucleus lateral subnucleusipsiIPL2
Interpeduncular nucleus rostral subnucleusipsiIPR3
Interpeduncular nucleus rostral subnucleus central partipsiIPRce3
Lateral septal nucleus caudal partipsiLSc1
Lateral septal nucleus rostral partipsiLSr1
Lateral septal nucleus ventral partipsiLSV3
Septofimbrial nucleusipsiSFi3
Triangular septal nucleusipsiTS3
Septohypothalamic nucleusipsiSHy3
Reuniens thalamic nucleuscontraRe2
Lateral habenular nucleuscontraLHb2
Amygdaloid complexcontraAC-0.5

Input from

NameSideAbbr.WeightDetails
Paralemniscal nucleusipsiPL-3
Periaqueductal grayipsiPAG1
Retrolaterodorsal tegmental nucleusipsirLDT-3
Laterodorsal tegmental nucleusipsiLDTg2
Dorsal tegmental nucleusipsiDTg-3
Nucleus incertus pars dissipataipsiNId-3
Middle rostrocaudal extent of the pontine reticular nucleus oral partipsiPnOmrce3
Dorsal raphe nucleusipsiDR2
Superior central raphe nucleus lateral partipsiCSl2
Superior central raphe nucleus medial partipsiCSm3
Cuneate nucleusipsiCu1
Diagonal band of BrocaipsiDBB2
Medial septal nucleusipsiMS1
Lateral preoptic areaipsiLPO1
Medial preoptic nucleus medial partipsiMPOM1
Lateral zoneipsiLHA1
Lateral hypothalamic areaipsiLH2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM-0.5
Posterior hypothalamic areaipsiPHA1
Supramammillar nucleus lateral partipsiSuML1
Perifornical nucleusipsiPeF-0.5
Ventral thalamusipsiVNT1
Zona incertaipsiZI1
Lateral habenular nucleus medial partipsiLHbM-3
Lateral amygdaloid nucleusipsiLA2
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM1
Retrosplenial regionsipsiRS2
Retrosplenial dorsalipsiRSd1
Anterior cingulate cortexipsiACC-0.5
Cingulate cortex area 1 caudal partipsiCg1c-3
Cingulate cortex area 1 rostral partipsiCg1r3
Cingulate cortex area 2 caudal partipsiCg2c-3
Cingulate cortex area 2 rostral partipsiCg2r3
Prelimbic cortexipsiPrL3
Infralimbic cortexipsiIL2
Lateral orbital cortexipsiLO-3
Medial orbital cortexipsiMO3
Ventral orbital cortexipsiVO3
Ventrolateral orbital areaipsiVLO-3
Interpeduncular nucleus central subnucleusipsiIPRc3
Interpeduncular nucleus dorsal subnucleusipsiIPRd-3
Interpeduncular nucleus intermediate subnucleusipsiIPI1
Interpeduncular nucleus rostral subnucleusipsiIPR1
Interpeduncular nucleus rostral subnucleus midrostrocaudal partipsiIPRmrc4
Septofimbrial nucleusipsiSFi2
Dorsal raphe nucleus caudal partcontraDRC1
Septofimbrial nucleuscontraSFi2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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