University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Intermediate zone T1 left


Abbreviation
izVHT1
Color       
Superior regionsVentral horn T1

SynonymsAbbr.Language
Intermediate zone T1izVHT1Eng

SubregionsSide
Spinal cord layer 7 T1left
Spinal cord layer 8 T1left

Output to

NameSideAbbr.WeightDetails
Reticulotegmental nucleusipsiRETn-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Parabrachial nucleusipsiPB-0.5
Koelliker Fuse nucleusipsiKF-0.5
Dorsal column nucleiipsiDCN2
Lateral hypothalamic areaipsiLH1.5
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0.5
Paraventricular hypothalamic nucleusipsiPa0.5
Suprachiasmatic nucleusipsiSCh0.5
Supraoptic nucleus [Supraoptic region]ipsiSO0.5
Lateral hypothalamic areacontraLH3
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT-0.5
Anteroventral thalamic nucleuscontraAV-0.5
Centrolateral thalamic nucleuscontraCL-0.5
Lateral anterior nucleus of the dorsal thalamuscontraLAAT-0.5
Posterior thalamic nuclear group medial partcontraPoMe1
Mediodorsal thalamic nucleuscontraMD-0.5
Ventrolateral thalamic nucleuscontraVL-0.5
Ventromedial thalamic nucleuscontraVM-0.5
Lateral funiculuscontralf-2

Input from

NameSideAbbr.WeightDetails
Locus coeruleusipsiLC3
Locus coeruleus caudal partipsiLCca-0.5
Locus coeruleus ventral partipsiLCv-0.5
Reticulotegmental nucleusipsiRETn-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Parabrachial nucleusipsiPB-0.5
Koelliker Fuse nucleusipsiKF-0.5
Locus coeruleuscontraLC2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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