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Rat connectome



Intercalated nuclei of the amygdala right


Abbreviation
I
Color       
Superior regionsIntercalated masses

SynonymsAbbr.Language
Intercalated amygdalar nucleiIAEng
Intercalated nuclei of the amygdalaIEng
Intercalated nuclei amygdalaIA 
Intercalated nuclei of the amygdalaIA 

SubregionsSide
Intercalated nuclei of the amygdala lateral partright
Intercalated nuclei of the amygdala rostral partright

Output to

NameSideAbbr.WeightDetails
Lateral parabrachial nucleuscontraLPB-0.5
Parabrachial nucleus medialcontraPBnMe-0.5
Parabrachial nucleusipsiPB-0.5
Lateral parabrachial nucleusipsiLPB-0.5
Parabrachial nucleus medialipsiPBnMe-0.5
Substantia innominataipsiSI1
Posterior hypothalamic nucleusipsiPH-0.5
Ventromedial hypothalamic nucleusipsiVMH-0.5
Arcuate nucleusipsiArc0.5
Premammillary nucleus ventral partipsiPMV-0.5
Mediodorsal thalamic nucleusipsiMD-0.5
Ventromedial thalamic nucleusipsiVM-0.5
Basal nucleusipsiBnc-3
Accessory basal nucleusipsiAB-3
Accessory basal nucleus magnocellular divisionipsiABm-3
Accessory basal nucleus parvicellular divisionipsiABp-3
Basal nucleus intermediate divisionipsiBnci-3
Basal nucleus magnocellular partipsiBmc-3
Basal nucleus parvicellular partipsiBpc-3
Basolateral amygdaloid nucleusipsiBL1
Lateral amygdaloid nucleusipsiLA-3
Dorsolateral part of the lateral nucleusipsiLaDL-3
Lateral nucleus medial partipsiLAM-3
Ventrolateral part of the lateral nucleusipsiLaVL-3
Central amygdaloid nucleusipsiCe-0.5
Central amygdaloid nucleus intermediate divisionipsiCeI-3
Central amygdaloid nucleus lateral divisionipsiCeL-3
Central amygdaloid nucleus lateral division capsular partipsiCeC-3
Central amygdaloid nucleus medial divisionipsiCeM-3
Anterior amygdaloid areaipsiAA-3
Anterior cortical amygdaloid nucleusipsiACo-3
Posterior amygdaloid nucleus medial partipsiCOApm1
Posterior amygdaloid nucleusipsiCOAp-3
Nucleus of the lateral olfactory tractipsiLOT-3
Periamygdaloid complexipsiPAC-3
Periamygdaloid complex medial divisionipsiPACm-3
Periamygdaloid complex sulcal divisionipsiPACs-3
Medial amygdaloid nucleusipsiMe-3
Medial amygdaloid nucleus caudal partipsiMeC-3
Medial amygdaloid nucleus central dorsal partipsiMeCD-3
Medial amygdaloid nucleus central ventral partipsiMeCV-3
Medial amygdaloid nucleus rostral partipsiMeRo-3
Amygdalohippocampal areaipsiAHi-3
Amygdalohippocampal area lateral partipsiAHilp-3
Amygdalohippocampal area medial partipsiAHimp-3
Bed nucleus of the accessory olfactory tractipsiBAOT-3
Intercalated nuclei of the amygdalaipsiI-3
Medial accumbens shellipsiAcbShm3
HippocampusipsiHIPP0
Field CA1 of hippocampus temporal partipsiCA1t0.5
Agranular insular cortex dorsal part superficial layersipsiAIDsL1

Input from

NameSideAbbr.WeightDetails
Ventral lateral medulla oblongatacontraMVL2
Basal nucleus intermediate divisioncontraBnci1
Posterior amygdaloid nucleuscontraCOAp0.5
Infralimbic cortex caudal polecontraILCaP1
Ventral tegmental area A10ipsiVTA3
Dorsal raphe nucleusipsiDR2
Ventral lateral medulla oblongataipsiMVL1
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar1
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR1
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp1
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm0
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa3
Lateral hypothalamic area perifornical partipsiPFx2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Parafascicular thalamic nucleusipsiPF-0.5
Posterior intralaminar thalamic nucleusipsiPIL1
Basal nucleusipsiBnc1
Accessory basal nucleusipsiAB1
Accessory basal nucleus magnocellular divisionipsiABm1
Accessory basal nucleus parvicellular divisionipsiABp1
Basal nucleus intermediate divisionipsiBnci1
Basal nucleus magnocellular partipsiBmc2
Basal nucleus parvicellular partipsiBpc1
Anterior basolateral nucleusipsiBLA2.5
Posterior basolateral nucleusipsiBLP2.5
Anterior basomedial nucleusipsiBMA0
Posterior basomedial nucleusipsiBMP1.5
Lateral amygdaloid nucleusipsiLA1.5
Dorsolateral part of the lateral nucleusipsiLaDL0
Lateral nucleus medial partipsiLAM1
Ventrolateral part of the lateral nucleusipsiLaVL1
Bed nucleus of the stria terminalis anterior division anterolateral nucleusipsiBSTal0.5
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm0
Bed nucleus of the stria terminalis anterior division subcommissural partipsiBSTAsc0.5
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM0
Bed nucleus of the stria terminalis fusiform partipsiFu-2
Bed nucleus of the stria terminalis magnocellular nucleusipsiBSTmc0
Bed nucleus of the stria terminalis oval nucleusipsiBSTo-2
Bed nucleus of the stria terminalis rhomboid nucleusipsiBSTrh0
Bed nucleus of the stria terminalis juxtacapsular partipsiBSTj0
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd0
Bed nucleus of the stria terminalis interfascicular nucleusipsiBSTif-2
Bed nucleus of the stria terminalis posterior division ventral nucleusipsiBSTV0
Bed nucleus of the stria terminalis principal nucleusipsiBSTpr0
Bed nucleus of the stria terminalis transverse nucleusipsiBSTt-2
Central amygdaloid nucleusipsiCe0
Central amygdaloid nucleus intermediate divisionipsiCeI0
Central amygdaloid nucleus lateral divisionipsiCeL0
Central amygdaloid nucleus lateral division capsular partipsiCeC0
Central amygdaloid nucleus medial divisionipsiCeM0
Amygdalopiriform transition area lateral partipsiAPirLP2
Anterior amygdaloid areaipsiAA0
Anterior cortical amygdaloid nucleusipsiACo1
Posterior amygdaloid nucleus medial partipsiCOApm3
Posterior amygdaloid nucleusipsiCOAp2
Posterolateral cortical nucleusipsiPLCo0
Nucleus of the lateral olfactory tractipsiLOT-3
Periamygdaloid complexipsiPAC1
Periamygdaloid complex medial divisionipsiPACm1
Periamygdaloid complex sulcal divisionipsiPACs1
Medial amygdaloid nucleusipsiMe2
Medial amygdaloid nucleus caudal partipsiMeC1
Medial amygdaloid nucleus central dorsal partipsiMeCD2
Medial amygdaloid nucleus central ventral partipsiMeCV2
Medial amygdaloid nucleus rostral partipsiMeRo-3
Amygdalohippocampal areaipsiAHi1
Amygdalohippocampal area lateral partipsiAHilp2
Amygdalohippocampal area medial partipsiAHimp1
Bed nucleus of the accessory olfactory tractipsiBAOT-3
Intercalated nuclei of the amygdalaipsiI-3
Field CA1 of hippocampusipsiCA11
Field CA1 of hippocampus central partipsiCA1c2.5
Field CA1 of hippocampus medial partipsiCA1m0
Field CA1 of hippocampus temporal partipsiCA1t2.5
Intermediate subiculumipsiInSu1
Intermediate subiculum dorsal partipsiSidp0
Intermediate subiculum middle partipsiSimp1
Intermediate subiculum rostral partipsiSirp2
Intermediate subiculum ventral partipsiSivp1
Subiculum dorsal partipsiSd0.5
Subiculum ventral partipsiSv2
Subiculum lateral ventral partipsiSvl2
Subiculum ventral part caudal subdivisionipsiSvc1
Subiculum ventral part rostral subdivisionipsiSvr2
Lateral entorhinal cortex ventromedial partipsiVMEAL0.5
Ventrolateral entorhinal cortexipsiVLENT0.5
Ventrolateral entorhinal cortex layersipsiVLENTL0.5
Postpiriform transition areaipsiTR3
Infralimbic cortexipsiIL-0.5
Infralimbic cortex caudal poleipsiILCaP1
Temporal association area 3 rostral partipsiTe3R-0.5
Temporal association area 3 ventrocaudal portionipsiTe3vc1
Medial prefrontal cortexipsimPFC-1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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