| Name | Side | Abbr. | Weight | Details |
|---|
| Arcuate nucleus | contra | Arc | -0.5 | |
| Central gray pons part | ipsi | CGP | 3 | |
| Periaqueductal gray medial part | ipsi | PAGm | 3 | |
| Periaqueductal gray rostromedial division | ipsi | PAGrm | 3 | |
| Ventrolateral periaqueductal gray | ipsi | VLPAG | 3 | |
| Central tegmental field lateral part | ipsi | TGACL | 1 | |
| Peduncularpontine nucleus | ipsi | PPN | 2 | |
| Ventral tegmental area A10 | ipsi | VTA | 2 | |
| Interfascicular nucleus | ipsi | IF | 1 | |
| Caudal linear nucleus of the raphe | ipsi | CLi | 1 | |
| Retrorubral nucleus | ipsi | RR | 3 | |
| Laterodorsal tegmental nucleus | ipsi | LDTg | 2 | |
| Barringtons nucleus | ipsi | Bar | 3 | |
| Magnocellular reticular nucleus | ipsi | NRMC | 2 | |
| Mesencephalic reticular formation | ipsi | MRF | 2 | |
| Pontine reticular nucleus caudal part | ipsi | PNC | 2 | |
| Parabrachial nucleus | ipsi | PB | 1 | |
| Gigantocellular reticular nucleus | ipsi | Gi | 1 | |
| Medullary reticular nucleus ventral part | ipsi | MdV | 1 | |
| Dorsal raphe nucleus | ipsi | DR | 1 | |
| Rostral linear nucleus of the raphe | ipsi | RLi | 1 | |
| Raphe magnus nucleus | ipsi | RMg | 2 | |
| Raphe obscurus nucleus | ipsi | ROb | 1 | |
| Raphe pallidus nucleus | ipsi | RPa | 1 | |
| Lateral paragigantocellular nucleus | ipsi | LPGi | 1 | |
| Prosencephalon | ipsi | PRC | 2 | |
| Substantia innominata | ipsi | SI | 3 | |
| Lateral preoptic area | ipsi | LPO | 3 | |
| Medial preoptic area | ipsi | MPA | 3 | |
| Anterodorsal preoptic nucleus | ipsi | ADP | 2 | |
| Medial preoptic nucleus lateral part | ipsi | MPOL | 2 | |
| Median preoptic nucleus | ipsi | MnPO | 3 | |
| Ventral tuberomammillary nucleus | ipsi | VTM | 1 | |
| Vascular organ of the lamina terminalis | ipsi | VOLT | 1 | |
| Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]] | ipsi | JPVC | 0.5 | |
| Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]] | ipsi | JPVR | 0.5 | |
| Lateral hypothalamic area [Region of tuber cinereum] | ipsi | LHTUC | 3 | |
| Lateral hypothalamic area | ipsi | LH | 3 | |
| Lateral hypothalamic area juxtadorsomedial region | ipsi | JDM | 1 | |
| Lateral hypothalamic area motor related juxtaventromedial region dorsal zone | ipsi | LHAjvd | 0 | |
| Lateral hypothalamic area motor related juxtaventromedial region ventral zone | ipsi | LHAjvv | 0.5 | |
| Tuberal nucleus | ipsi | TU | 3 | |
| Anterior hypothalamic area | ipsi | AHA | 2 | |
| Anterior hypothalamic nucleus | ipsi | AHn | 2 | |
| Anteroventral preoptic nucleus | ipsi | AnV | 3 | |
| Parastriatal nucleus | ipsi | PS | 2 | |
| Posterior hypothalamic area | ipsi | PHA | 3 | |
| Anterior periventricular nucleus | ipsi | PeA | 2 | |
| Arcuate nucleus | ipsi | Arc | 1 | |
| Dorsomedial hypothalamic nucleus [Periventricular zone] | ipsi | DMpz | 3 | |
| Intermediate periventricular nucleus of the hypothalamus | ipsi | PVi | 2 | |
| Nucleus paraventricularis [Periventricular zone anterior region] | ipsi | PaPAR | 3 | |
| Paraventricular hypothalamic nucleus descending division | ipsi | PVHd | 3 | |
| Paraventricular hypothalamic nucleus neuroendocrine division | ipsi | PVHne | 3 | |
| Paraventricular hypothalamic nucleus parvocellular division | ipsi | PavPo | 3 | |
| Posterior periventricular nucleus | ipsi | PeP | 1 | |
| Preoptic periventricular nucleus | ipsi | PePO | 2 | |
| Subparaventricular zone of the hypothalamus | ipsi | SPa | 3 | |
| Suprachiasmatic nucleus | ipsi | SCh | 1 | |
| Supraoptic nucleus [Supraoptic region] | ipsi | SO | 3 | |
| Medial mammillary nucleus medial part | ipsi | MM | 1 | |
| Supramammillar nucleus | ipsi | SuM | 3 | |
| Retrochiasmatic area | ipsi | RCh | 2 | |
| Anterodorsal thalamic nucleus | ipsi | AD | 1 | |
| Central medial thalamic nucleus | ipsi | CM | 2 | |
| Intermediodorsal thalamic nucleus | ipsi | IMD | 2 | |
| Mediodorsal thalamic nucleus medial part | ipsi | MDM | 1 | |
| Paratenial thalamic nucleus | ipsi | PT | 1 | |
| Paraventricular thalamic nucleus | ipsi | PV | 3 | |
| Reuniens thalamic nucleus | ipsi | Re | 2 | |
| Subparafascicular thalamic nucleus parvicellular part | ipsi | SPFp | 1 | |
| Lateral habenular nucleus | ipsi | LHb | 2 | |
| Anterior basolateral nucleus | ipsi | BLA | 0 | |
| Posterior basolateral nucleus | ipsi | BLP | 0.5 | |
| Anterior basomedial nucleus | ipsi | BMA | 1 | |
| Posterior basomedial nucleus | ipsi | BMP | 0 | |
| Lateral amygdaloid nucleus | ipsi | LA | 0 | |
| Bed nucleus of the stria terminalis anterior division anterolateral nucleus | ipsi | BSTal | 2 | |
| Bed nucleus of the stria terminalis anterior division dorsomedial nucleus | ipsi | BSTdm | 0 | |
| Bed nucleus of the stria terminalis anterior division subcommissural part | ipsi | BSTAsc | 2 | |
| Bed nucleus of the stria terminalis anterior medial part | ipsi | BSTAM | 3 | |
| Bed nucleus of the stria terminalis anterior ventral area | ipsi | BSTAV | 3 | |
| Bed nucleus of the stria terminalis fusiform part | ipsi | Fu | 3 | |
| Bed nucleus of the stria terminalis magnocellular nucleus | ipsi | BSTmc | 4 | |
| Bed nucleus of the stria terminalis oval nucleus | ipsi | BSTo | 0 | |
| Bed nucleus of the stria terminalis rhomboid nucleus | ipsi | BSTrh | 2 | |
| Bed nucleus of the stria terminalis anterior division anteromedial nucleus | ipsi | BSTaam | 2 | |
| Bed nucleus of the stria terminalis juxtacapsular part | ipsi | BSTj | 0 | |
| Bed nucleus of the stria terminalis lateral division ventral part | ipsi | BSTLV | 2 | |
| Bed nucleus of the stria terminalis dorsal nucleus | ipsi | BSTd | 0 | |
| Bed nucleus of the stria terminalis interfascicular nucleus | ipsi | BSTif | 2 | |
| Bed nucleus of the stria terminalis posterior division cell-sparse zone | ipsi | BSTsz | 0 | |
| Bed nucleus of the stria terminalis posterior division striatal extension | ipsi | BSTse | 0 | |
| Bed nucleus of the stria terminalis posterior division ventral nucleus | ipsi | BSTV | 4 | |
| Bed nucleus of the stria terminalis premedullary nucleus | ipsi | BSTpm | 0 | |
| Bed nucleus of the stria terminalis principal nucleus | ipsi | BSTpr | 1 | |
| Bed nucleus of the stria terminalis transverse nucleus | ipsi | BSTt | 1 | |
| Central amygdaloid nucleus | ipsi | Ce | 3 | |
| Capsule like area surrounding central amygdaloid nucleus | ipsi | Cec | 2 | |
| Central amygdaloid nucleus lateral division | ipsi | CeL | 0.5 | |
| Central amygdaloid nucleus medial division | ipsi | CeM | 3 | |
| Amygdalopiriform transition area | ipsi | APir | 0 | |
| Anterior amygdaloid area | ipsi | AA | 1 | |
| Anterior cortical amygdaloid nucleus | ipsi | ACo | 0 | |
| Posterior amygdaloid nucleus medial part | ipsi | COApm | 0 | |
| Posterior amygdaloid nucleus | ipsi | COAp | 1 | |
| Posterolateral cortical nucleus | ipsi | PLCo | 0.5 | |
| Medial amygdaloid nucleus anterodorsal part | ipsi | MeAD | 1 | |
| Medial amygdaloid nucleus anteroventral part | ipsi | MeAV | 0 | |
| Medial amygdaloid nucleus posteroventral part | ipsi | MePV | 0.5 | |
| Bed nucleus of the accessory olfactory tract | ipsi | BAOT | 0 | |
| Intercalated nuclei of the amygdala | ipsi | I | 0 | |
| Accumbens nucleus | ipsi | Ac | 2 | |
| Postpiriform transition area | ipsi | TR | 0 | |
| Prelimbic cortex | ipsi | PrL | 1 | |
| Infralimbic cortex | ipsi | IL | 1 | |
| Agranular insular cortex | ipsi | AI | 1 | |
| Lateral septal nucleus | ipsi | LS | 2 | |
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