University of Rostock

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Rat connectome



Basal nucleus intermediate division right


Abbreviation
Bnci
Color       
Superior regionsBasal nucleus

SynonymsAbbr.Language
Basal nucleus intermediate divisionBiEng
Intermediate division of the basal nucleus Eng
Basal nucleus intermediate divisionBnciEng

Output to

NameSideAbbr.WeightDetails
Substantia innominata dorsomedial aspectcontraSIdm1
Substantia innominata rostral aspectcontraSIr1
Substantia innominata ventrolateral aspectcontraSIvl1
Accessory basal nucleuscontraAB1
Basal nucleus intermediate divisioncontraBnci3
Basal nucleus magnocellular partcontraBmc2
Basal nucleus parvicellular partcontraBpc3
Basal nucleus parvicellular part rostral regioncontraBpcr1
Posterior basolateral nucleus intermediate subdivisioncontraBLPi3
Dorsolateral part of the lateral nucleuscontraLaDL1
Lateral nucleus medial partcontraLAM1
Ventrolateral part of the lateral nucleuscontraLaVL1
Central amygdaloid nucleus lateral divisioncontraCeL1
Central amygdaloid nucleus lateral division capsular partcontraCeC1
Central amygdaloid nucleus medial divisioncontraCeM1
Anterior amygdaloid areacontraAA1
Anterior cortical amygdaloid nucleuscontraACo1
Posterolateral cortical nucleuscontraPLCo1
Nucleus of the lateral olfactory tractcontraLOT3
Nucleus of the lateral olfactory tract layer 2contraLOTL22
Periamygdaloid complexcontraPAC1
Periamygdaloid complex medial divisioncontraPACm1
Periamygdaloid complex sulcal divisioncontraPACs1
Medial amygdaloid nucleus central dorsal partcontraMeCD1
Medial amygdaloid nucleus central ventral partcontraMeCV1
Medial amygdaloid nucleus rostral partcontraMeRo1
Amygdalohippocampal area lateral partcontraAHilp1
Amygdalohippocampal area ventral partcontraAHivp1
Posteromedial cortical nucleuscontraPMCo1
Amygdalostriatal transition areacontraAStr0.5
Intercalated nuclei of the amygdalacontraI1
Intercalated nuclei of the amygdala lateral partcontraLMI1
Fundus of the striatumcontraFS1
SubiculumcontraS0.5
ParasubiculumcontraPaS0.5
Dorsolateral entorhinal cortexcontraDLEnt0.5
Dorsal intermediate entorhinal cortexcontraDIEnt0.5
Central endopiriform systemipsiCEnN1
Rostral endopiriform regionipsiREn1
Basal nucleusipsiBnc-3
Accessory basal nucleusipsiAB-3
Accessory basal nucleus magnocellular divisionipsiABm1
Accessory basal nucleus parvicellular divisionipsiABp1
Basal nucleus intermediate divisionipsiBnci2
Basal nucleus magnocellular partipsiBmc1
Basal nucleus parvicellular partipsiBpc1
Lateral amygdaloid nucleusipsiLA1
Dorsolateral part of the lateral nucleusipsiLaDL1
Lateral nucleus medial partipsiLAM1
Ventrolateral part of the lateral nucleusipsiLaVL1
Central amygdaloid nucleusipsiCe-3
Central amygdaloid nucleus intermediate divisionipsiCeI0
Central amygdaloid nucleus lateral divisionipsiCeL1
Central amygdaloid nucleus lateral division capsular partipsiCeC1
Central amygdaloid nucleus medial divisionipsiCeM1
Anterior amygdaloid areaipsiAA1
Anterior cortical amygdaloid nucleusipsiACo1
Posterior amygdaloid nucleusipsiCOAp1
Nucleus of the lateral olfactory tractipsiLOT2
Periamygdaloid complexipsiPAC1
Periamygdaloid complex medial divisionipsiPACm0
Periamygdaloid complex sulcal divisionipsiPACs1
Medial amygdaloid nucleusipsiMe-3
Medial amygdaloid nucleus caudal partipsiMeC0
Medial amygdaloid nucleus central dorsal partipsiMeCD1
Medial amygdaloid nucleus central ventral partipsiMeCV1
Medial amygdaloid nucleus rostral partipsiMeRo0
Amygdalohippocampal areaipsiAHi-3
Amygdalohippocampal area lateral partipsiAHilp1
Amygdalohippocampal area medial partipsiAHimp1
Bed nucleus of the accessory olfactory tractipsiBAOT0
Intercalated nuclei of the amygdalaipsiI1
Ventral part of claustrumipsiVCl1
Field CA1 of hippocampus layer stratum oriensipsiCA1or1
Field CA1 of hippocampus temporal partipsiCA1t1
SubiculumipsiS2
Amygdaloentorhinal transitional field 6ipsiAE1
Dorsolateral entorhinal cortexipsiDLEnt1
Dorsal anterior cingulate cortexipsiDACC3
Perirhinal cortexipsiA351
Perirhinal cortex layer 5ipsiA35L51
Ectorhinal cortex layer 5ipsiA36L51
Ectorhinal cortex layer 6ipsiA36L61

Input from

NameSideAbbr.WeightDetails
Basal nucleus intermediate divisioncontraBnci3
Basal nucleus magnocellular partcontraBmc3
Basal nucleus parvicellular partcontraBpc3
Basal nucleusipsiBnc-3
Accessory basal nucleusipsiAB-3
Accessory basal nucleus magnocellular divisionipsiABm1
Accessory basal nucleus parvicellular divisionipsiABp1
Basal nucleus intermediate divisionipsiBnci2
Basal nucleus magnocellular partipsiBmc2
Basal nucleus parvicellular partipsiBpc2
Lateral amygdaloid nucleusipsiLA-3
Dorsolateral part of the lateral nucleusipsiLaDL1
Lateral nucleus medial partipsiLAM2
Ventrolateral part of the lateral nucleusipsiLaVL2
Central amygdaloid nucleusipsiCe-3
Central amygdaloid nucleus intermediate divisionipsiCeI0
Central amygdaloid nucleus lateral divisionipsiCeL0
Central amygdaloid nucleus lateral division capsular partipsiCeC0
Central amygdaloid nucleus medial divisionipsiCeM0
Amygdalopiriform transition area lateral partipsiAPirLP0.5
Amygdalopiriform transition area medial part caudal aspectipsiAPirMc1
Amygdalopiriform transition area medial part rostral aspectipsiAPirMr-0.5
Anterior amygdaloid areaipsiAA-3
Anterior cortical amygdaloid nucleusipsiACo1
Posterior amygdaloid nucleusipsiCOAp0
Nucleus of the lateral olfactory tractipsiLOT-3
Periamygdaloid complexipsiPAC0.5
Periamygdaloid complex medial divisionipsiPACm-3
Periamygdaloid complex sulcal divisionipsiPACs-3
Medial amygdaloid nucleusipsiMe-3
Medial amygdaloid nucleus caudal partipsiMeC1
Medial amygdaloid nucleus central dorsal partipsiMeCD0
Medial amygdaloid nucleus central ventral partipsiMeCV0
Medial amygdaloid nucleus rostral partipsiMeRo-3
Amygdalohippocampal areaipsiAHi-3
Amygdalohippocampal area lateral partipsiAHilp1
Amygdalohippocampal area medial partipsiAHimp0
Bed nucleus of the accessory olfactory tractipsiBAOT-3
Intercalated nuclei of the amygdalaipsiI-3
Field CA1 of hippocampus temporal partipsiCA1t2.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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