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Rat connectome



Medial geniculate nucleus medial part right


Abbreviation
MGM
Color       
Superior regionsMedial geniculate nucleus

SynonymsAbbr.Language
Medial geniculate nucleus medial partMGMEng
Medial geniculate body medial part  
Medial geniculate complex medial part  
Medial geniculate complex medial division  
Medial geniculate complex pars magnocellularis  
Magnocellular division of the medial geniculate body Eng
Medial division of the medial geniculate body Eng
Medial division of the medial geniculate body Eng
Medial geniculate nucleus pars medialisMGmEng
Medial geniculate body medial nucleus  
Magnocellular portion of the medial geniculate nucleus Eng
Medial division of the medial geniculate nucleus Eng

SubregionsSide
Dorsal part of the medial geniculate nucleus medial partright
Medial geniculate nucleus dorsoventral extent of the medial partright
Medial geniculate nucleus medial part caudal partright
Medial geniculate nucleus medial part intermediate partright
Medial margin of the medial part of the medial geniculate nucleusright
Ventral part of the medial geniculate nucleus medial partright
Medial geniculate nucleus medial part marginal zoneright
Medial geniculate nucleus lateral part of medial partright
Medial geniculate nucleus ovoid part of the medial partright

Output to

NameSideAbbr.WeightDetails
Dorsolateral pontine nucleuscontraDLPn0
Pontine nuclei lateral partcontraBPNL0
Pontine nucleus medial partcontraBPNm0
Pontine nucleus ventral partcontraBPNv0
Zona incertacontraZI0
Supragranular layers of the auditory cortexcontraAULs3
Posteromedial barrel subfieldcontraPMBSF0.5
Nuclei of the lateral lemniscusipsiNLL-1
Medial paralemniscal nucleusipsiMPL2
Dorsolateral pontine nucleusipsiDLPn-0.5
Inferior colliculusipsiICOL2
Central nucleus of the inferior colliculusipsiCIC-0.5
External cortex of the inferior colliculusipsiECIC3
External cortex of the inferior colliculus anterior partipsiECICA-0.5
Dorsal cortex of the inferior colliculusipsiDCIC3
Nucleus of the brachium of the inferior colliculusipsiBIC-1
Pericentral nucleus inferior colliculusipsiICOLp2
Superior colliculus intermediate layersipsiSCi3
Superior colliculus deep layersipsiSCd3
Deep gray layer of the superior colliculusipsiDpG3
Parapedunculopontine tegmental nucleusipsiPPPT-0.5
Peripeduncular nucleusipsiPP-1
Pontine nuclei lateral partipsiBPNL-0.5
Pontine nucleus medial partipsiBPNm-0.5
Pontine nucleus ventral partipsiBPNv-0.5
Mesencephalic reticular formationipsiMRF-1
Dorsal cochlear nucleusipsiDC2
Basal forebrainipsiBAF-0.5
Basal nucleus Meynert medial partipsiBmp1
Substantia innominataipsiSI3
HypothalamusipsiHYPO3
Posterior thalamic nuclear groupipsiPo2
Posterior thalamic nuclear group triangular partipsiPoT2
Suprageniculate thalamic nucleusipsiSG-1
Posterior intralaminar thalamic nucleusipsiPIL-1
Reticular thalamic nucleusipsiRt1
Reticular thalamic nucleus caudal partipsiRtc1
Caudal part of the auditory reticular thalamic nucleusipsiCARt-0.5
Auditory reticular thalamic nucleus middle partipsiARtmi-0.5
Bottom of the reticular thalamic nucleusipsiRtB-0.5
Subparafascicular thalamic nucleusipsiSPF1
Zona incertaipsiZI1
Zona incerta lateral partipsiZIL1
Anterior pretectal nucleusipsiAPT3
Amygdaloid complexipsiAC-0.5
Laterobasal nuclear complexipsiLBNC-0.5
Accessory basal nucleusipsiAB2
Basal nucleus ventral divisonipsiBncV1
Basolateral amygdaloid nucleusipsiBL-0.5
Basolateral nucleus rostral partipsiBLRP-0.5
Basomedial amygdaloid nucleusipsiBM3
Lateral amygdaloid nucleusipsiLA3
Dorsolateral part of the lateral nucleusipsiLaDL3
Lateral nucleus dorsal partipsiLAd-0.5
Lateral nucleus medial partipsiLAM0.5
Lateral nucleus ventral portionipsiLAVp-0.5
Ventrolateral part of the lateral nucleusipsiLaVL2
Ventromedial part of the lateral nucleusipsiLaVM3
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA2
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus pallidal partipsiCePa2
Central amygdaloid nucleus putamenal partipsiCePu2
Central amygdaloid nucleus ventral partipsiCeV-0.5
Anterior amygdaloid areaipsiAA2
Cortical amygdaloid nucleusipsiCAn2
Anterior cortical amygdaloid nucleusipsiACo-0.5
Medial amygdaloid nucleusipsiMe2
Bed nucleus of the accessory olfactory tractipsiBAOT2
Amygdalostriatal transition areaipsiAStr3
Amygdalostriatal transition area rostrocaudal partipsiAStrrc-0.5
Basal gangliaipsiBG3
Globus pallidusipsiGP3
StriatumipsiSTR3
Caudate putamenipsiCPu3
Caudal striatumipsiCPuc-0.5
Caudate putamen caudolateral partipsiCPucl-0.5
Central striatumipsiCPuce-0.5
Dorsal striatumipsiCPud3
Posterior caudate putamenipsiCPup3
Posterior caudate putamen medial partipsiCPupm2
Mid caudate putamenipsiCPumi-0.5
Tail of the striatumipsiCPuTa-0.5
Cerebral cortexipsiCEC-0.5
Temporal association area 2ipsiTe22
Temporal association area 2 dorsal partipsiTe2D3
Temporal association area 3ipsiTe33
Caudal part of the temporal association area 3ipsiTe3C1
Temporal association area 3 middle partipsiTe3Mi1
Temporal association area 3 ventral marginipsiTe3Vm1
Temporal association area 3 ventral part rostral portion lower layer 3ipsiTe3VRLL3-0.5
Temporal association area 3 ventral part rostral portion layer 4ipsiTe3VRL4-0.5
Temporal association cortex 1ipsiTeA2
Caudal part of temporal association cortex 1ipsiTeca1
Temporal association cortex 1 dorsoventral sector layer 1ipsiTeADVL1-0.5
Deep gray matter of the temporal association cortex 1ipsiTeAdL3
Temporal association cortex 1 layer 1ipsiTeAL1-0.5
Temporal association cortex 1 rostral partipsiTeAr2
Ventral temporal association cortexipsiTev2
Temporoparietal cortex multisensoric zoneipsiMZTPcx1.5
Auditory regionsipsiAU1
Supragranular layers of the auditory cortexipsiAULs3
PolyaudipsiPOLYAU2
Primary auditory cortexipsiAu12
Primary auditory cortex layer 4ipsiAu1L42
Secondary auditory cortex dorsal areaipsiAuD-0.5
Ventral auditory areasipsiAUDv1
Insular cortexipsiICX-0.5
Agranular insular cortexipsiAI1
Agranular insular cortex posterior partipsiAIP-0.5
Visceral dysgranular insular cortexipsiDIv-0.5
Granular insular cortex posterior partipsiGIpo2
Perirhinal cortexipsiA352
Perirhinal cortex anterior portionipsiPRha2
Perirhinal cortex dorsal portionipsiPRhd-0.5
Perirhinal cortex layer 3ipsiA35L33
Perirhinal cortex layer 4ipsiA35L43
Ectorhinal cortexipsiA36-0.5
Motoric regionsipsiM3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Visual regionsipsiVR3
Primary visual cortex lateral partipsiV1La-0.5
Medial geniculate nucleus medial partipsiMGM2
Medial geniculate nucleus ventral partipsiMGV2

Input from

NameSideAbbr.WeightDetails
Dorsal nucleus of the lateral lemniscuscontraDLL1
Optic nerve layer of the superior colliculuscontraOp1.5
Superior colliculus intermediate and deep layerscontraSCidLa-0.5
Lateral reticular nucleuscontraLRt-0.5
Principal sensory trigeminal nucleuscontraPr54
Spinal trigeminal nucleus caudal partcontraSp5C2
Spinal trigeminal nucleus interpolar partcontraSp5I3
Spinal trigeminal nucleus oral partcontraSp5O1
Cochlear systemcontraCOS2
Dorsal cochlear nucleuscontraDC2
Ventral cochlear nucleuscontraVC-0.5
Ventral cochlear nucleus posterior part lateral partcontraVCPL2
Ventral cochlear nucleus posterior part medial partcontraVCPM2
Spinal vestibular nucleuscontraSpVe3
Cuneate nucleuscontraCu3
GracilecontraGra3
Nucleus of BischoffcontraNBi0.5
Nucleus XcontraX2
Dorsal nucleus of the lateral lemniscusipsiDLL2
Ventral nucleus of the lateral lemniscusipsiVLL2
Inferior colliculusipsiICOL3
Central nucleus of the inferior colliculusipsiCIC3
External cortex of the inferior colliculusipsiECIC3
External cortex of the inferior colliculus anterior partipsiECICA-0.5
External cortex of the inferior colliculus layer 2ipsiECICL2-0.5
External cortex of the inferior colliculus layer 3ipsiECICL3-0.5
Dorsal cortex of the inferior colliculusipsiDCIC1
Superior colliculusipsiSC-0.5
Optic nerve layer of the superior colliculusipsiOp3
Superficial gray layer of the superior colliculusipsiSuG2
Superior colliculus intermediate and deep layersipsiSCidLa-0.5
Superior colliculus intermediate layersipsiSCi3
Intermediate gray layer of the superior colliculusipsiInG2
Superior colliculus deep layersipsiSCd3
Deep gray layer of the superior colliculusipsiDpG2
Parapedunculopontine tegmental nucleusipsiPPPT-0.5
Lateral reticular nucleusipsiLRt-0.5
Principal sensory trigeminal nucleusipsiPr52
Spinal trigeminal nucleusipsiSp5nc-0.5
Spinal trigeminal nucleus caudal partipsiSp5C0.5
Spinal trigeminal nucleus dorsal partipsiSp5ncD1
Spinal trigeminal nucleus interpolar partipsiSp5I1.5
Spinal trigeminal nucleus oral partipsiSp5O0.5
Dorsal cochlear nucleusipsiDC2
Ventral cochlear nucleusipsiVC-0.5
Spinal vestibular nucleusipsiSpVe-0.5
Vestibular nucleiipsiVnc2
Dorsal column nucleiipsiDCN1
Cuneate nucleusipsiCu1.5
GracileipsiGra1.5
Gracile nucleus principal partipsiGr-0.5
Nucleus of BischoffipsiNBi0.5
Posterior intralaminar thalamic nucleusipsiPIL2
Posterior intralaminar thalamic nucleus lateral partipsiPILl1
Posterior intralaminar thalamic nucleus lateralmost partipsiPILlm-0.5
Subparafascicular thalamic nucleusipsiSPF2
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Anterior pretectal nucleusipsiAPT3
Lateral amygdaloid nucleusipsiLA2
Amygdalostriatal transition areaipsiAStr-0.5
Globus pallidusipsiGP-0.5
Caudal globus pallidusipsiGPc2
Caudate putamenipsiCPu-0.5
Temporal association area 2ipsiTe21
Temporal association area 3ipsiTe33
Temporal association area 3 rostral partipsiTe3R-0.5
Temporal association cortex 1ipsiTeA1
Caudal part of temporal association cortex 1ipsiTeca1
Temporal association cortex 1 layer 5ipsiTeAL50
Temporal association cortex 1 layer 6ipsiTeAL60
Ventral temporal association cortexipsiTev2
Auditory regionsipsiAU3
Primary auditory cortexipsiAu11
Granular insular cortex caudal partipsiGIC1
Perirhinal cortexipsiA35-0.5
Perirhinal cortex anterior portionipsiPRha3
Perirhinal cortex anterior portion layer 5ipsiPRhaL52.5
Perirhinal cortex anterior portion layer 6ipsiPRhaL62.5
Posteromedial barrel subfield A1 layer 6 lower partipsiPMBSFA1L6L-0.5
Posteromedial barrel subfield A2 layer 6 lower partipsiPMBSFA2L6L-0.5
Posteromedial barrel subfield A3 layer 6 lower partipsiPMBSFA3L6L-0.5
Posteromedial barrel subfield A4 layer 6 lower partipsiPMBSFA4L6L-0.5
Posteromedial barrel subfield B1 layer 6 lower partipsiPMBSFB1L6L-0.5
Posteromedial barrel subfield B2 layer 6 lower partipsiPMBSFB2L6L-0.5
Posteromedial barrel subfield B3 layer 6 lower partipsiPMBSFB3L6L-0.5
Posteromedial barrel subfield B4 layer 6 lower partipsiPMBSFB4L6L-0.5
Posteromedial barrel subfield C1 layer 6 lower partipsiPMBSFC1L6L-0.5
Posteromedial barrel subfield C2 layer 6 lower partipsiPMBSFC2L6L-0.5
Posteromedial barrel subfield C3 layer 6 lower partipsiPMBSFC3L6L-0.5
Posteromedial barrel subfield C4 layer 6 lower partipsiPMBSFC4L6L-0.5
Posteromedial barrel subfield C5 layer 6 lower partipsiPMBSFC5L6L-0.5
Posteromedial barrel subfield D1 layer 6 lower partipsiPMBSFD1L6L-0.5
Posteromedial barrel subfield D2 layer 6 lower partipsiPMBSFD2L6L-0.5
Posteromedial barrel subfield D3 layer 6 lower partipsiPMBSFD3L6L-0.5
Posteromedial barrel subfield D4 layer 6 lower partipsiPMBSFD4L6L-0.5
Posteromedial barrel subfield D5 layer 6 lower partipsiPMBSFD5L6L-0.5
Posteromedial barrel subfield D6 layer 6 lower partipsiPMBSFD6L6L-0.5
Posteromedial barrel subfield E1 layer 6 lower partipsiPMBSFE1L6L-0.5
Posteromedial barrel subfield E2 layer 6 lower partipsiPMBSFE2L6L-0.5
Posteromedial barrel subfield E3 layer 6 lower partipsiPMBSFE3L6L-0.5
Posteromedial barrel subfield E4 layer 6 lower partipsiPMBSFE4L6L-0.5
Posteromedial barrel subfield E5 layer 6 lower partipsiPMBSFE5L6L-0.5
Posteromedial barrel subfield E6 layer 6 lower partipsiPMBSFE6L6L-0.5
Posteromedial barrel subfield E7 layer 6 lower partipsiPMBSFE7L6L-0.5
Primary visual cortex lateral partipsiV1La-0.5
Medial geniculate nucleus medial partipsiMGM2
Spinal cord layers C1ipsiSCLC10
Spinal cord layers C2ipsiSCLC20
Spinal cord layers C3ipsiSCLC30
Spinal cord layers C4ipsiSCLC40
Spinal cord layers C5ipsiSCLC50
Spinal cord layers C6ipsiSCLC60
Spinal cord layers C7ipsiSCLC70
Spinal cord layers C8ipsiSCLC80
Dorsal horn L3ipsiDHL3-0.5
Ventral horn L3ipsiVHL3-0.5
Dorsal horn L4ipsiDHL4-0.5
Ventral horn L4ipsiVHL4-0.5
Dorsal horn L5ipsiDHL5-0.5
Ventral horn L5ipsiVHL5-0.5
Dorsal horn L6ipsiDHL6-0.5
Ventral horn L6ipsiVHL6-0.5
Dorsal horn S1ipsiDHS1-0.5
Ventral horn S1ipsiVHSa1-0.5
Dorsal horn S2ipsiDHS2-0.5
Ventral horn S2ipsiVHSa2-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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