University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Subthalamic nucleus middle part right


Abbreviation
SThm
Color       
Superior regionsSubthalamic nucleus medial part

SynonymsAbbr.Language
Subthalamic nucleus middle partSThmEng
Subthalamic nucleus medial part  
Medial part of subthalamic nucleus  

SubregionsSide
Ventral part of subthalamic nucleus middle partright

Output to

NameSideAbbr.WeightDetails
Medial in the ventrolateral central grayipsiCGMLV1
Central tegmental fieldipsiTGAC-0.5
Substantia nigra compact partipsiSNC1
Substantia nigra medial partipsiSNM2
Substantia nigra reticular part medial tieripsiSNRm2
Substantia nigra reticular part medial two-thirdsipsiSNRmtt2.5
Ventral tegmental area A10ipsiVTA2
Pedunculopontine tegmental nucleus caudal partipsiPPTgC2
Pedunculopontine tegmental nucleus rostral partipsiPPTgR2
Parabrachial nucleusipsiPB-0.5
Rostral basal forebrainipsiRBAF1
Ventral basal forebrainipsiVBAF1
A8 dopamine cells retrorubral groupipsiRRF-0.5
Parafascicular thalamic nucleus lateral partipsiPFL1
Parafascicular thalamic nucleus medial partipsiPFM2.5
Globus pallidusipsiGP1
Lateral globus pallidusipsiLGP1
Medial globus pallidusipsiMGP2
Ventral pallidumipsiVP2
Ventral pallidum lateral partipsiVPlp2
Accumbens nucleus posterolateral partipsiAcbpl1
Olfactory tubercle caudal part deep layersipsiTuOCdL1

Input from

NameSideAbbr.WeightDetails
Retrorubral nucleuscontraRR1
Laterodorsal tegmental nucleus ventral partcontraLDTgV0.5
Pedunculopontine tegmental nucleuscontraPPTg1
Deep mesencephalic nucleuscontraDpMe1
Pontine reticular nucleus oral partcontraPnO1
Superior colliculus lateral partipsiSCL1
Midbrain extrapyramidal areaipsiMEA2
Peduncular pontine nucleus central partipsiPPNc2
Peduncular pontine nucleus lateral partipsiPPNl1
Substantia nigra compact partipsiSNC2
Retrorubral nucleusipsiRR2
Laterodorsal tegmental nucleusipsiLDTg1
Laterodorsal tegmental nucleus ventral partipsiLDTgV1.5
Pedunculopontine tegmental nucleusipsiPPTg2
Pedunculopontine tegmental nucleus caudolateral partipsiPPTgcL1
Deep mesencephalic nucleusipsiDpMe2
Pontine reticular nucleus oral partipsiPnO2
Basal forebrainipsiBAF3
Parafascicular thalamic nucleus caudal partipsiPFc2
Parafascicular thalamic nucleus rostral partipsiPFr2
Bed nucleus of the stria terminalisipsiBST2
Globus pallidusipsiGP2
Globus pallidus dorsolateral partipsiGPdL0
Ventral pallidumipsiVP2
Ventral pallidum dorsal partipsiVPd2
Ventral pallidum dorsolateral partipsiVPdl-0.5
Ventral pallidum lateral partipsiVPlp2
Ventral striatumipsiCPuv0.5
Cerebral cortex layer 5ipsiCCL52
Cingulate cortexipsiCg1
Anterior cingulate cortexipsiACC1
Frontal association cortexipsiFrA1
Somatomotoric regionsipsiSMR1
Motoric regionsipsiM0
Medial prefrontal cortexipsimPFC1
Medial agranular prefrontal cortex rostral part layer 5ipsirAGmL52
Primary somatosensory cortexipsiS11

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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