University of Rostock

Department of Anatomy

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Rat connectome



Cerebral cortex layer 5 right


Abbreviation
CCL5
Color       
Superior regionsDeep cortical layer of the cerebral cortex

SynonymsAbbr.Language
Cerebral cortex layer 5CCL5Eng

SubregionsSide
Cerebral cortex layer 5aright
Cerebral cortex layer 5bright

Output to

NameSideAbbr.WeightDetails
Reticular systemcontraRF-0.5
Spinal trigeminal nucleus interpolar part dorsal partcontraSp5ID-0.5
Nucleus of the solitary tractcontraSol-0.5
Rostral ventrolateral medullacontraRVLM-0.5
ThalamuscontraT1
Parafascicular thalamic nucleuscontraPF3
Dorsal funiculuscontradfu3
Dorsolateral striatumcontraCPudl3
Spinal cord interneuronscontraMESin-0.5
Cervical segment 1contraCS10.5
Spinal cord layers C3contraSCLC31
Spinal cord layers C4contraSCLC41
Spinal cord layers C5contraSCLC52
Spinal cord layers C6contraSCLC62
Spinal cord layers C7contraSCLC73
Spinal cord layers C8contraSCLC83
MesencephalonipsiMEC3
Central gray mesencephalic part inferior colliculus levelipsiCGMinf-1
Central gray mesencephalic part intercollicular levelipsiCGMint-1
Central gray mesencephalic part superior colliculus levelipsiCGMsc-1
Reticular systemipsiRF-0.5
Spinal trigeminal nucleus interpolar part dorsal partipsiSp5ID-0.5
Basal forebrainipsiBAF3
ThalamusipsiT3
Parafascicular thalamic nucleusipsiPF3
Posterior thalamic nuclear groupipsiPo-0.5
Ventral posteromedial thalamic nucleusipsiVPM0.5
Zona incertaipsiZI2
Amygdaloid complexipsiAC-1
StriatumipsiSTR-10
Accumbens nucleusipsiAc-1
Caudate putamenipsiCPu2
Dorsal striatumipsiCPud-0.5
Dorsolateral striatumipsiCPudl3
Lateral striatumipsiCPul-0.5
Subthalamic nucleusipsiSTh2
Subthalamic nucleus middle partipsiSThm2
Jaw movement motor cortexipsiJMCx-0.5
Olfactory tubercleipsiTuO-1
Pyramidal decussationipsipyx-2
Cervical segment 1ipsiCS14
Cervical segment 2ipsiCS24
Cervical segment 3ipsiCS3-0.5
Spinal cord layer 9 C6ipsiSCL9C6-0.5
Spinal cord layer 9 C7ipsiSCL9C7-0.5
Spinal cord layer 9 C8ipsiSCL9C8-0.5
Spinal cord layer 9 T1ipsiSCL9T1-0.5

Input from

NameSideAbbr.WeightDetails
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic areaipsiPHA1
Cerebral cortex layer 3ipsiCCL3-0.5
Primary somatosensory cortex forelimb regionipsiS1FL2
Persisting white matter subplate neuronsipsiPWMSN-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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