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Rat connectome



Medial agranular prefrontal cortex rostral part layer 5 right


Abbreviation
rAGmL5
Color       
Superior regionsMedial agranular prefrontal cortex rostral part deep layers

SynonymsAbbr.Language
Medial agranular prefrontal cortex rostral part layer 5rAGmL5 

Output to

NameSideAbbr.WeightDetails
Spinal cord layer 5 C4contraSCL5C4-0.5
Spinal cord layer 3 C4contraSCL3C4-0.5
Spinal cord layer 4 C4contraSCL4C4-0.5
Spinal cord layer 1 C4contraSCL1C4-0.5
Spinal cord layer 2 C4contraSCL2C4-0.5
Spinal cord layer 7 C4contraSCL7C4-0.5
Spinal cord layer 5 C5contraSCL5C5-0.5
Spinal cord layer 3 C5contraSCL3C5-0.5
Spinal cord layer 4 C5contraSCL4C5-0.5
Spinal cord layer 1 C5contraSCL1C5-0.5
Spinal cord layer 2 C5contraSCL2C5-0.5
Spinal cord layer 7 C5contraSCL7C5-0.5
Corticospinal tract of the cervical enlargementcontraCSegEcst-2
Spinal cord layer 5 L3contraSCL5L3-0.5
Spinal cord layer 3 L3contraSCL3L3-0.5
Spinal cord layer 4 L3contraSCL4L3-0.5
Spinal cord layer 1 L3contraSCL1L3-0.5
Spinal cord layer 2 L3contraSCL2L3-0.5
Spinal cord layer 7 L3contraSCL7L3-0.5
Spinal cord layer 5 L4contraSCL5L4-0.5
Spinal cord layer 3 L4contraSCL3L4-0.5
Spinal cord layer 4 L4contraSCL4L4-0.5
Spinal cord layer 1 L4contraSCL1L4-0.5
Spinal cord layer 2 L4contraSCL2L4-0.5
Spinal cord layer 7 L4contraSCL7L4-0.5
Longitudinal fasciculus of the ponsipsilfp-2
Superior colliculus deep layersipsiSCd2
Substantia nigra A9ipsiSN-2
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Deep mesencephalic nucleusipsiDpMe1
Pontine reticular nucleusipsiPRN2
Medullary reticular nucleusipsiMdD2
Posterior thalamic nuclear groupipsiPo1
Posterior thalamic nuclear group caudal partipsiPoca-0.5
Posterior thalamic nuclear group posterior partipsiPoP-0.5
Ventrolateral thalamic nucleusipsiVL-2
Ventral posteromedial thalamic nucleusipsiVPM-2
Intralaminar nucleiipsiILN-0.5
Reticular thalamic nucleusipsiRt-2
Zona incertaipsiZI-0.5
Zona incerta dorsocaudal partipsiZIDC2
Anterior pretectal nucleus ventral partipsiAPTV-0.5
Internal capsuleipsiic-2
Cerebral peduncle basal partipsicp-2
Medial lemniscusipsiml-2
Ventral part of the cerebral peduncleipsivcp-2
Globus pallidusipsiGP-2
Caudal striatum ventrolateral partipsiCPuVL2
Lateral striatumipsiCPul2
Subthalamic nucleusipsiSTh2
Motor territory of the subthalamic nucleusipsiSThMo-0.5
Region between caudal subthalamic nucleus and rostral substantia nigraipsicSThrSN-0.5
Subthalamic nucleus caudal partipsiSThc2
Subthalamic nucleus caudomedial partipsiSThCM0
Subthalamic nucleus lateral partipsiSThl0
Subthalamic nucleus middle partipsiSThm2
Ectorhinal cortexipsiA363
Lateral agranular prefrontal cortexipsiAGl0
Lateral agranular prefrontal cortex layer 1ipsiAGlL11
Lateral agranular prefrontal cortex layer 2ipsiAGlL21
Lateral agranular prefrontal cortex layer 3ipsiAGlL31
Medial agranular prefrontal cortexipsiAGm1
Medial agranular prefrontal cortex layer 5 aipsiAGmL5a3
Primary somatosensory cortex forelimb region forepawipsiS1FP1
Somatosensory cortex layer 1ipsiSRL11
Somatosensory cortex layer 2ipsiSRL21
Somatosensory cortex layer 3ipsiSRL31
Pyramidal tractipsipy-2

Input from

NameSideAbbr.WeightDetails
Area 29b caudalmost partcontraA29bcm0.5
Retrosplenial granular cortex c regioncontraRSGc0.5
Area 29d rostral partipsiA29dR1.5
Retrosplenial granular cortex c regionipsiRSGc1.5
Parietal cortex posterior area layersipsiParPLa2
Primary somatosensory cortex forelimb region forepawipsiS1FP1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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