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Rat connectome



Deep mesencephalic nucleus right


Abbreviation
DpMe
Color       
Superior regionsMesencephalic reticular formation

SynonymsAbbr.Language
Deep mesencephalic reticular formation  
Deep mesencephalic nuclei  
Deep mesencephalic reticular field Eng
Deep mesencephalic reticular nucleusDpMeEng
Nucleus reticularis mesencephalicus profundus Eng
Deep mesencephalic nucleusDMNEng
Deep mesencephalic nucleusDpMeEng
Deep mesencephalic reticular formationMesFREng

SubregionsSide
Deep mesencephalic nucleus dorsal partright
Deep mesencephalic nucleus dorsolateral partright
Deep mesencephalic nucleus intermediateright
Deep mesencephalic nucleus lateral partright
Deep mesencephalic nucleus medial partright
Deep mesencephalic nucleus rostral partright
Deep mesencephalic nucleus ventral partright
Deep mesencephalic nucleus ventral superior partright
Deep mesencephalic nucleus ventrolateral partright
Deep mesencephalic nucleus ventromedial partright

Output to

NameSideAbbr.WeightDetails
Medial longitudinal fasciculuscontramlf-0.5
Nuclei of the lateral lemniscuscontraNLL1
Periaqueductal graycontraPAG0
Lateral periaqueductal graycontraLPAG0
Periaqueductal gray medial partcontraPAGm0
Ventrolateral periaqueductal graycontraVLPAG3
Superior colliculuscontraSC1
Central tegmental field dorsal partcontraTGACd1
Substantia nigra compact partcontraSNC0
Ventral tegmental area A10contraVTA1
Ventral tegmental area A10 lateral partcontraVTAL3
Middle part of the retrorubral fieldcontraRRmi1.5
Ventrolateral tegmental areacontraVLTg3
Laterodorsal tegmental nucleuscontraLDTg3
Ventral tegmental nucleuscontraVTg1
Dorsal tegmental nucleuscontraDTg1
Pedunculopontine tegmental nucleuscontraPPTg4
Cerebellar lobule 9contraCERL9-0.5
Locus coeruleuscontraLC1.5
Prepositus nucleuscontraPr1
Deep mesencephalic nucleuscontraDpMe-0.5
Deep mesencephalic nucleus dorsal partcontraDpMeD3
Deep mesencephalic nucleus intermediatecontraDpMei2
Deep mesencephalic nucleus lateral partcontraDpMeL2
Deep mesencephalic nucleus medial partcontraDpMeM2
Pontine reticular nucleuscontraPRN1
Ventrolateral pontine reticular formationcontravlPRF1
Lateral parabrachial nucleuscontraLPB1.5
Medullary reticular nucleus dorsal partcontraMdDd3
Facial nucleuscontra71
Facial nucleus dorsolateral subnucleuscontra7DL0
Facial nucleus lateral subnucleuscontra7L1
Facial nucleus medial partcontra7M2
Facial nucleus ventral partcontra7V1
Facial nucleus dorsal intermediate subnucleuscontra7DI0
Raphe pallidus nucleuscontraRPa3
Ventral lateral medulla oblongatacontraMVL2
Caudal ventrolateral medulla lateral partcontraCVLMl1
Paragigantocellular reticular nucleuscontraPGi-0.5
Lateral paragigantocellular nucleuscontraLPGi2
Posterior region [Lateral division of the hypothalamus]contraPReg0
Lateral hypothalamic areacontraLH0.5
A8 dopamine cells retrorubral group lateral partcontraRRFL1.5
A8 dopamine cells retrorubral group medial partcontraRRFm1.5
Subincertal nucleuscontraSubI0.5
Central medial thalamic nucleus lateral partcontraCMl0.5
Centrolateral thalamic nucleuscontraCL0.5
Paracentral thalamic nucleuscontraPC0.5
Mediodorsal thalamic nucleuscontraMD1
Mediodorsal thalamic nucleus lateral partcontraMDL0.5
Paratenial thalamic nucleuscontraPT0.5
Lateral thalamic nuclear groupcontraLTNG1
Zona incertacontraZI1
Zona incerta caudal partcontraZIC0.5
Medial terminal nucleus of the accessory optic tractcontraMT-0.5
Subthalamic nucleus dorsomedial partcontraSThdm0.5
Subthalamic nucleus middle partcontraSThm1
Cervical segment 5contraCS5-0.5
Cervical segment 6contraCS6-0.5
Cervical segment 7contraCS7-0.5
Cervical segment 8contraCS8-0.5
Cervical dorsal horncontraCSegD-0.5
Thoracal segment 1contraT1-0.5
Spinal cord layer 8 T8contraSCL8T8-0.5
Spinal cord layer 8 T9contraSCL8T9-0.5
Spinal cord layer 8 T10contraSCL8T10-0.5
Spinal cord layer 8 T11contraSCL8T11-0.5
Spinal cord layer 8 T12contraSCL8T12-0.5
Spinal cord layer 8 T13contraSCL8T13-0.5
Lumbar segment 1contraL1-0.5
Spinal cord layers L1contraSCLL1-0.5
Lumbar segment 2contraL2-0.5
Spinal cord layers L2contraSCLL2-0.5
Lumbar segment 3contraL3-0.5
Lumbar segment 4contraL4-0.5
Lumbar segment 5contraL5-0.5
Lumbar segment 6contraL6-0.5
Medial longitudinal fasciculusipsimlf-0.5
Nuclei of the lateral lemniscusipsiNLL2
Medial paralemniscal nucleusipsiMPL2
Nucleus of DarkschewitschipsiDk0
Oculomotor nucleusipsi32
Periaqueductal grayipsiPAG2
Dorsolateral periaqueductal grayipsiDLPAG3
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray medial partipsiPAGm1
Periaqueductal gray rostral partipsiPAGR3
Ventrolateral periaqueductal grayipsiVLPAG4
Superior colliculusipsiSC3
Superior colliculus intermediate layersipsiSCi-0.5
Superior colliculus deep layersipsiSCd1
Central tegmental field dorsal partipsiTGACd1
Mesopontine tegmental area caudal partipsiTGAmc1.5
Mesopontine tegmental area mid-levelipsiTGAmm2
Mesopontine tegmental area rostral partipsiTGAmr2
Rostromedial tegmental nucleusipsiRMTg2
Substantia nigra A9ipsiSN2
Substantia nigra compact partipsiSNC3
Substantia nigra reticular partipsiSNR2
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 lateral partipsiVTAL3
Ventral tegmental area A10 middle thirdipsiVTAmit-0.5
Middle part of the retrorubral fieldipsiRRmi3
Ventrolateral tegmental areaipsiVLTg1
Laterodorsal tegmental nucleusipsiLDTg3
Ventral tegmental nucleusipsiVTg2
Dorsal tegmental nucleusipsiDTg2
Pedunculopontine tegmental nucleusipsiPPTg4
Pedunculopontine tegmental nucleus caudal partipsiPPTgC1.5
Pedunculopontine tegmental nucleus mid levelipsiPPTgmL2
Pedunculopontine tegmental nucleus rostral partipsiPPTgR2
Edinger Westphal nucleusipsiEW3
Cerebellar lobule 10ipsiCERL101
FlocculusipsiFl-0.5
Locus coeruleusipsiLC3
Locus coeruleus caudal partipsiLCca1
Locus coeruleus rostral partipsiLCRo1
Pontine sublaterodorsal nucleusipsiPsLdn-0.5
Prepositus nucleusipsiPr1
Deep mesencephalic nucleusipsiDpMe2
Deep mesencephalic nucleus dorsal partipsiDpMeD4
Pontine reticular nucleusipsiPRN2
Ventrolateral pontine reticular formationipsivlPRF2
Pontine reticular nucleus caudal partipsiPNC2
Cuneiforme nucleusipsiCnF2
Lateral parabrachial nucleusipsiLPB3
Gigantocellular reticular nucleus alpha partipsiGiA3
Medullary reticular nucleus dorsal partipsiMdDd3
Facial nucleusipsi71
Facial nucleus dorsolateral subnucleusipsi7DL0
Facial nucleus lateral subnucleusipsi7L3
Facial nucleus medial partipsi7M0
Facial nucleus ventral partipsi7V1
Facial nucleus dorsal intermediate subnucleusipsi7DI0
Spinal trigeminal nucleusipsiSp5nc2
Dorsal raphe nucleusipsiDR3
Ventral part of the central dorsal raphe nucleusipsiDRvcep3
Dorsal raphe nucleus median partipsiDRM1
Median raphe nucleusipsiMnR1
Raphe magnus nucleus caudal partipsiRMgc3
Raphe magnus nucleus rostral partipsiRMgR3
Raphe pallidus nucleusipsiRPa3
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medulla lateral partipsiCVLMl1
Paragigantocellular reticular nucleusipsiPGi2
Lateral paragigantocellular nucleusipsiLPGi3
Retrotrapezoid nucleusipsiRTN2
Preoptic regionipsiPREO0.5
HypothalamusipsiHYPO0
Posterior region [Lateral division of the hypothalamus]ipsiPReg1
Lateral hypothalamic areaipsiLH1
Medial division of the hypothalamusipsiMdH1
Mediobasal hypothalamus anterior partipsiMeHypoAnt0.5
Mediobasal hypothalamus posterior partipsiMeHypoP0.5
Paraventricular hypothalamic nucleusipsiPa1
A8 dopamine cells retrorubral group lateral partipsiRRFL3
A8 dopamine cells retrorubral group medial partipsiRRFm3
Subincertal nucleusipsiSubI1
Anteroventral thalamic nucleusipsiAV0
Central medial thalamic nucleusipsiCM4
Central medial thalamic nucleus lateral partipsiCMl1
Centrolateral thalamic nucleusipsiCL4
Paracentral thalamic nucleusipsiPC1
Paracentral thalamic nucleus caudal partipsiPC-c4
Paracentral thalamic nucleus rostral partipsiPC-r3
Parafascicular thalamic nucleus lateral partipsiPFL4
Parafascicular thalamic nucleus medial partipsiPFM4
Rhomboid thalamic nucleusipsiRh3
Mediodorsal thalamic nucleusipsiMD2
Intermediodorsal thalamic nucleusipsiIMD3
Mediodorsal thalamic nucleus lateral partipsiMDL1
Submedius thalamic nucleusipsiSub1
Paratenial thalamic nucleusipsiPT1
Paraventricular thalamic nucleusipsiPV1
Paraventricular thalamic nucleus anterior partipsiPVA3
Paraventricular thalamic nucleus medial partipsiPVM2
Paraventricular thalamic nucleus posterior partipsiPVP3
Reuniens thalamic nucleusipsiRe3
Ventral posterior thalamic nucleus parvicellular partipsiVPPC3
Ventral posterolateral thalamic nucleus anterior partipsiVPLA2
Ventral posteromedial thalamic nucleus anterior partipsiVPMA2
Ventromedial thalamic nucleusipsiVM-0.5
Ventromedial thalamic nucleus caudal partipsiVMc4
Oval paracentral thalamic nucleusipsiOPC4
Ventral thalamusipsiVNT1
Zona incertaipsiZI3
Zona incerta caudal partipsiZIC1
Nucleus of the optic tractipsiOT-0.5
Lateral habenular nucleusipsiLHb1
Anterior pretectal nucleusipsiAPT-0.5
Lateral funicleipsilfunc-2
Medial terminal nucleus of the accessory optic tractipsiMT-0.5
Amygdaloid complexipsiAC-0.5
Bed nucleus of the stria terminalis medial division posteromedial partipsiBSTMPM0.5
Central amygdaloid nucleusipsiCe1
Medial globus pallidusipsiMGP2
Caudate putamenipsiCPu2
Subthalamic nucleusipsiSTh2
Subthalamic nucleus dorsomedial partipsiSThdm1
Subthalamic nucleus middle partipsiSThm2
Septal regionipsiSER0
Spinal cordipsiMES-0.5
Spinal cord layer 5 C1ipsiSCL5C1-0.5
Spinal cord layer 6 C1ipsiSCL6C1-0.5
Spinal cord layer 3 C1ipsiSCL3C1-0.5
Spinal cord layer 4 C1ipsiSCL4C1-0.5
Spinal cord layer 7 C1ipsiSCL7C1-0.5
Spinal cord layer 5 C2ipsiSCL5C2-0.5
Spinal cord layer 6 C2ipsiSCL6C2-0.5
Spinal cord layer 3 C2ipsiSCL3C2-0.5
Spinal cord layer 4 C2ipsiSCL4C2-0.5
Spinal cord layer 7 C2ipsiSCL7C2-0.5
Spinal cord layer 5 C3ipsiSCL5C3-0.5
Spinal cord layer 6 C3ipsiSCL6C3-0.5
Spinal cord layer 3 C3ipsiSCL3C3-0.5
Spinal cord layer 4 C3ipsiSCL4C3-0.5
Spinal cord layer 7 C3ipsiSCL7C3-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 6 C4ipsiSCL6C4-0.5
Spinal cord layer 3 C4ipsiSCL3C4-0.5
Spinal cord layer 4 C4ipsiSCL4C4-0.5
Spinal cord layer 7 C4ipsiSCL7C4-0.5
Spinal cord layers C5ipsiSCLC51
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 6 C5ipsiSCL6C5-0.5
Spinal cord layer 3 C5ipsiSCL3C5-0.5
Spinal cord layer 4 C5ipsiSCL4C5-0.5
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Spinal cord layers C6ipsiSCLC61
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 6 C6ipsiSCL6C6-0.5
Spinal cord layer 3 C6ipsiSCL3C6-0.5
Spinal cord layer 4 C6ipsiSCL4C6-0.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Cervical segment 7ipsiCS7-1
Spinal cord layer 5 C7ipsiSCL5C7-0.5
Spinal cord layer 6 C7ipsiSCL6C7-0.5
Spinal cord layer 3 C7ipsiSCL3C7-0.5
Spinal cord layer 4 C7ipsiSCL4C7-0.5
Ventral horn C7ipsiVHC7-0.5
Spinal cord layer 7 C7ipsiSCL7C7-0.5
Spinal cord layer 5 C8ipsiSCL5C8-0.5
Spinal cord layer 6 C8ipsiSCL6C8-0.5
Spinal cord layer 3 C8ipsiSCL3C8-0.5
Spinal cord layer 4 C8ipsiSCL4C8-0.5
Ventral horn C8ipsiVHC8-0.5
Spinal cord layer 7 C8ipsiSCL7C8-0.5
Spinal cord layers L1ipsiSCLL1-0.5
Spinal cord layers L2ipsiSCLL2-0.5
Stellate ganglionipsiAutoSteG3
Pterygopalatine ganglionipsiAutoPpG-0.5
Submandibular glandcontraOrgsSubg-10
Femoral bone marrowcontraOrgSkFemM1
KidneycontraOrgsKid-0.5
SpleencontraOrgSPL-0.5
Intercapsular brown adipose tissueipsiOrgBATi-10
Submandibular glandipsiOrgsSubg-10
Lumbar epaxial musclesipsiMuscLep-0.5
Femoral bone marrowipsiOrgSkFemM1
KidneyipsiOrgsKid-0.5
SpleenipsiOrgSPL1

Input from

NameSideAbbr.WeightDetails
Substantia nigra A9contraSN2
Substantia nigra reticular partcontraSNR0.5
Ventral tegmental area A10contraVTA4
Ventrolateral tegmental areacontraVLTg1
Ventral tegmental nucleuscontraVTg-0.5
Dorsolateral humpcontraCERcndl2
Anterior interposed nucleuscontraAIN2
Posterior interposed nucleuscontraCERpin2
Lateral cerebellar nucleuscontraCERL3
Medial cerebellar nucleuscontraMed3
Prepositus nucleuscontraPr1
Deep mesencephalic nucleuscontraDpMe-0.5
Pontine reticular nucleuscontraPRN1
Ventrolateral pontine reticular formationcontravlPRF1
Medullary reticular nucleus dorsal partcontraMdDd3
Ventral part of the nucleus medullae oblongatae centraliscontraVMdDc-0.5
Principal sensory trigeminal nucleuscontraPr51
Principal sensory trigeminal nucleus ventral partcontraPr5v-0.5
Spinal trigeminal nucleus caudal partcontraSp5C-0.5
Spinal trigeminal nucleus intermediate partcontraSp5nci1
Spinal trigeminal nucleus oral partcontraSp5O1
Rostral ventral respiratory groupcontraRVRG1
Dorsomedial hypothalamic nucleuscontraDMHy0
Perifornical hypothalamic area [Preoptic anterior region]contraPFxPAR0
Lateral hypothalamic area dorsal partcontraLHd0
Lateral hypothalamic area ventral partcontraLHAvp-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Periventricular zonecontraPVZ-0.5
Medial part of the caudal perifornical areacontraPeFCM0
Lateral part of the caudal perifornical areacontraPeFCL-0.5
Caudate putamencontraCPu0
Lateral cervical nucleuscontraLatC2
Dorsal root ganglion C1contraDRGC1-0.5
Area X C1contraSCL10C11
Spinal cord layer 6 C1contraSCL6C1-0.5
Spinal cord layer 3 C1contraSCL3C12
Spinal cord layer 4 C1contraSCL4C12
Superficial dorsal horn C1contraSDHC12
Spinal cord layer 1 C1contraSCL1C12
Spinal cord layer 2 C1contraSCL2C12
Dorsal root ganglion C2contraDRGC2-0.5
Area X C2contraSCL10C21
Spinal cord layer 6 C2contraSCL6C2-0.5
Spinal cord layer 3 C2contraSCL3C22
Spinal cord layer 4 C2contraSCL4C22
Spinal cord layer 1 C2contraSCL1C22
Spinal cord layer 2 C2contraSCL2C22
Area X C3contraSCL10C31
Spinal cord layer 6 C3contraSCL6C3-0.5
Spinal cord layer 3 C3contraSCL3C31
Spinal cord layer 4 C3contraSCL4C31
Spinal cord layer 1 C3contraSCL1C31
Spinal cord layer 2 C3contraSCL2C31
Area X C4contraSCL10C41
Spinal cord layer 3 C4contraSCL3C41
Spinal cord layer 4 C4contraSCL4C41
Spinal cord layer 1 C4contraSCL1C41
Spinal cord layer 2 C4contraSCL2C41
Area X C5contraSCL10C51
Spinal cord layer 3 C5contraSCL3C51
Spinal cord layer 4 C5contraSCL4C51
Spinal cord layer 1 C5contraSCL1C51
Spinal cord layer 2 C5contraSCL2C51
Area X C6contraSCL10C61
Spinal cord layer 3 C6contraSCL3C61
Spinal cord layer 4 C6contraSCL4C61
Spinal cord layer 1 C6contraSCL1C61
Spinal cord layer 2 C6contraSCL2C61
Area X C7contraSCL10C71
Spinal cord layer 3 C7contraSCL3C71
Spinal cord layer 4 C7contraSCL4C71
Spinal cord layer 1 C7contraSCL1C71
Spinal cord layer 2 C7contraSCL2C71
Area X C8contraSCL10C81
Spinal cord layer 3 C8contraSCL3C81
Spinal cord layer 4 C8contraSCL4C81
Spinal cord layer 1 C8contraSCL1C81
Spinal cord layer 2 C8contraSCL2C81
Area X T1contraSCL10T11
Spinal cord layer 3 T1contraSCL3T11
Spinal cord layer 4 T1contraSCL4T11
Spinal cord layer 1 T1contraSCL1T11
Spinal cord layer 2 T1contraSCL2T11
Area X T2contraSCL10T21
Spinal cord layer 3 T2contraSCL3T21
Spinal cord layer 4 T2contraSCL4T21
Spinal cord layer 1 T2contraSCL1T21
Spinal cord layer 2 T2contraSCL2T21
Area X T3contraSCL10T31
Spinal cord layer 3 T3contraSCL3T31
Spinal cord layer 4 T3contraSCL4T31
Spinal cord layer 1 T3contraSCL1T31
Spinal cord layer 2 T3contraSCL2T31
Area X T4contraSCL10T41
Spinal cord layer 3 T4contraSCL3T41
Spinal cord layer 4 T4contraSCL4T41
Spinal cord layer 1 T4contraSCL1T41
Spinal cord layer 2 T4contraSCL2T41
Area X T5contraSCL10T51
Spinal cord layer 3 T5contraSCL3T51
Spinal cord layer 4 T5contraSCL4T51
Spinal cord layer 1 T5contraSCL1T51
Spinal cord layer 2 T5contraSCL2T51
Area X T6contraSCL10T61
Spinal cord layer 3 T6contraSCL3T61
Spinal cord layer 4 T6contraSCL4T61
Spinal cord layer 1 T6contraSCL1T61
Spinal cord layer 2 T6contraSCL2T61
Area X T7contraSCL10T71
Spinal cord layer 3 T7contraSCL3T71
Spinal cord layer 4 T7contraSCL4T71
Spinal cord layer 1 T7contraSCL1T71
Spinal cord layer 2 T7contraSCL2T71
Area X T8contraSCL10T81
Spinal cord layer 3 T8contraSCL3T81
Spinal cord layer 4 T8contraSCL4T81
Spinal cord layer 1 T8contraSCL1T81
Spinal cord layer 2 T8contraSCL2T81
Area X T9contraSCL10T91
Spinal cord layer 3 T9contraSCL3T91
Spinal cord layer 4 T9contraSCL4T91
Spinal cord layer 1 T9contraSCL1T91
Spinal cord layer 2 T9contraSCL2T91
Area X T10contraSCL10T101
Spinal cord layer 3 T10contraSCL3T101
Spinal cord layer 4 T10contraSCL4T101
Spinal cord layer 1 T10contraSCL1T101
Spinal cord layer 2 T10contraSCL2T101
Area X T11contraSCL10T111
Spinal cord layer 3 T11contraSCL3T111
Spinal cord layer 4 T11contraSCL4T111
Spinal cord layer 1 T11contraSCL1T111
Spinal cord layer 2 T11contraSCL2T111
Area X T12contraSCL10T121
Spinal cord layer 3 T12contraSCL3T121
Spinal cord layer 4 T12contraSCL4T121
Spinal cord layer 1 T12contraSCL1T121
Spinal cord layer 2 T12contraSCL2T121
Area X T13contraSCL10T131
Spinal cord layer 3 T13contraSCL3T131
Spinal cord layer 4 T13contraSCL4T131
Spinal cord layer 1 T13contraSCL1T131
Spinal cord layer 2 T13contraSCL2T131
Area X L1contraSCL10L11
Spinal cord layer 3 L1contraSCL3L11
Spinal cord layer 4 L1contraSCL4L11
Spinal cord layer 1 L1contraSCL1L11
Spinal cord layer 2 L1contraSCL2L11
Area X L2contraSCL10L21
Spinal cord layer 3 L2contraSCL3L21
Spinal cord layer 4 L2contraSCL4L21
Spinal cord layer 1 L2contraSCL1L21
Spinal cord layer 2 L2contraSCL2L21
Area X L3contraSCL10L31
Spinal cord layer 3 L3contraSCL3L31
Spinal cord layer 4 L3contraSCL4L31
Spinal cord layer 1 L3contraSCL1L31
Spinal cord layer 2 L3contraSCL2L31
Area X L4contraSCL10L41
Spinal cord layer 3 L4contraSCL3L41
Spinal cord layer 4 L4contraSCL4L41
Spinal cord layer 1 L4contraSCL1L41
Spinal cord layer 2 L4contraSCL2L41
Area X L5contraSCL10L51
Spinal cord layer 3 L5contraSCL3L51
Spinal cord layer 4 L5contraSCL4L51
Spinal cord layer 1 L5contraSCL1L51
Spinal cord layer 2 L5contraSCL2L51
Area X L6contraSCL10L61
Spinal cord layer 3 L6contraSCL3L61
Spinal cord layer 4 L6contraSCL4L61
Spinal cord layer 1 L6contraSCL1L61
Spinal cord layer 2 L6contraSCL2L61
Area X S1contraSCL10S11
Spinal cord layer 3 S1contraSCL3S11
Spinal cord layer 4 S1contraSCL4S11
Spinal cord layer 1 S1contraSCL1S11
Spinal cord layer 2 S1contraSCL2S11
Area X S2contraSCL10S21
Spinal cord layer 3 S2contraSCL3S21
Spinal cord layer 4 S2contraSCL4S21
Spinal cord layer 1 S2contraSCL1S21
Spinal cord layer 2 S2contraSCL2S21
Area X S3contraSCL10S31
Spinal cord layer 3 S3contraSCL3S31
Spinal cord layer 4 S3contraSCL4S31
Spinal cord layer 1 S3contraSCL1S31
Spinal cord layer 2 S3contraSCL2S31
Area X S4contraSCL10S41
Spinal cord layer 3 S4contraSCL3S41
Spinal cord layer 4 S4contraSCL4S41
Spinal cord layer 1 S4contraSCL1S41
Spinal cord layer 2 S4contraSCL2S41
Area X Co1contraSCL10Co11
Spinal cord layer 3 Co1contraSCL3Co11
Spinal cord layer 4 Co1contraSCL4Co11
Spinal cord layer 1 Co1contraSCL1Co11
Spinal cord layer 2 Co1contraSCL2Co11
Area X Co2contraSCL10Co21
Spinal cord layer 3 Co2contraSCL3Co21
Spinal cord layer 4 Co2contraSCL4Co21
Spinal cord layer 1 Co2contraSCL1Co21
Spinal cord layer 2 Co2contraSCL2Co21
Area X Co3contraSCL10Co31
Spinal cord layer 3 Co3contraSCL3Co31
Spinal cord layer 4 Co3contraSCL4Co31
Spinal cord layer 1 Co3contraSCL1Co31
Spinal cord layer 2 Co3contraSCL2Co31
Periaqueductal grayipsiPAG-0.5
Ventrolateral periaqueductal gray caudal partipsiPAGvlc-1
Ventrolateral periaqueductal gray rostral partipsiPAGvlr3
Superior colliculusipsiSC-0.5
Superior colliculus intermediate white layeripsiSAI3
Intermediate gray layer of the superior colliculusipsiInG-0.5
Deep gray layer of the superior colliculusipsiDpG3
Deep white layer of the superior colliculusipsiDpWh3
Mesopontine tegmental area caudal partipsiTGAmc2
Mesopontine tegmental area dorsal partipsiTGAmd2
Mesopontine tegmental area mid-levelipsiTGAmm2
Mesopontine tegmental area rostral partipsiTGAmr2
Mesopontine tegmental area ventral partipsiTGAmv1.5
Ventral midbrain tegmentumipsiVeMT1
Substantia nigra A9ipsiSN3
Substantia nigra compact part dorsal tier lateral subsivisionipsiSNCDl-0.5
Substantia nigra compact part ventral tieripsiSNCV2
Substantia nigra compact part ventral tier dopaminergic neuron populationipsiSNCVdopa0.5
Substantia nigra lateral partipsiSNL3
Substantia nigra reticular partipsiSNR2
Substantia nigra reticular part dorsolateral tieripsiSNRDL-0.5
Substantia nigra reticular part dorsoventral partipsiSNRdv3
Ventral tegmental area A10ipsiVTA4
Ventral tegmental tailipsiVTTa1
Transitional region between ventral tegmental area and the medial substantia nigra pars compactaipsiTRVTAmSNC1
Ventrolateral tegmental areaipsiVLTg3
Ventral tegmental nucleusipsiVTg-0.5
Pedunculopontine tegmental nucleus caudal partipsiPPTgC2
Pedunculopontine tegmental nucleus dorsal partipsiPPTgd2
Pedunculopontine tegmental nucleus mid levelipsiPPTgmL2
Pedunculopontine tegmental nucleus rostral partipsiPPTgR2
Pedunculopontine tegmental nucleus ventral partipsiPPTgv1.5
Edinger Westphal nucleusipsiEW2
Dorsolateral humpipsiCERcndl0
Anterior interposed nucleusipsiAIN0
Posterior interposed nucleusipsiCERpin0
Lateral cerebellar nucleusipsiCERL0
Medial cerebellar nucleusipsiMed0
Nucleus incertus pars compactaipsiNIc0.5
Prepositus nucleusipsiPr1
Caudalmost mesencephalic reticular formationipsicmMRF-0.5
Deep mesencephalic nucleusipsiDpMe2
Pontine reticular nucleusipsiPRN3
Ventrolateral pontine reticular formationipsivlPRF2
Pontine reticular nucleus caudal partipsiPNC-0.5
Cuneiforme nucleusipsiCnF3
Lateral parabrachial nucleusipsiLPB-0.5
Lateral parabrachial nucleus external partipsiLPBE2.5
Lateral reticular nucleusipsiLRt-0.5
Medullary reticular nucleus dorsal partipsiMdDd2
Ventral part of the nucleus medullae oblongatae centralisipsiVMdDc-0.5
Parvicellular reticular nucleusipsiPCRt-0.5
Subcoeruleus nucleus dorsal partipsiSubCD1
Area postremaipsiAP-0.5
Paratrigeminal nucleusipsiPa51
Principal sensory trigeminal nucleus ventral partipsiPr5v-0.5
Spinal trigeminal nucleus caudal partipsiSp5C-0.5
Spinal trigeminal nucleus intermediate partipsiSp5nci3
Spinal trigeminal nucleus oral partipsiSp5O3
Trigeminal ganglionipsi5Gn1
Ventral cochlear nucleusipsiVC-0.5
Superior vestibular nucleusipsiSuVe-0.5
Lateral vestibular nucleusipsiLVe3
Nucleus of the solitary tractipsiSol2
Cuneate nucleusipsiCu1
Gracile nucleus principal partipsiGr1
Superior oliveipsiSuOLi-0.5
Caudal part of the dorsal paragigantocellular nucleusipsiDPGiC-0.5
Caudal part of the paragigantocellular reticular nucleusipsiCPGi3
Rostral ventral respiratory groupipsiRVRG1
Substantia innominataipsiSI-0.5
Medial preoptic nucleusipsiMPO-0.5
Posterodorsal preoptic nucleusipsiPDP-0.5
Dorsomedial hypothalamic nucleusipsiDMHy0
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR0
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area caudal partipsiLHc-0.5
Lateral hypothalamic area dorsal partipsiLHd0
Lateral hypothalamic area perifornical partipsiPFx1
Lateral hypothalamic area ventral partipsiLHAvp0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Parastriatal nucleusipsiPS-0.5
Ventromedial hypothalamic nucleusipsiVMH-0.5
Periventricular zoneipsiPVZ1
Arcuate nucleusipsiArc0
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP-0.5
Medial part of the caudal perifornical areaipsiPeFCM0
Lateral part of the caudal perifornical areaipsiPeFCL0.5
Zona incertaipsiZI3
Lateral habenular nucleusipsiLHb1
Medial terminal nucleus of the accessory optic tractipsiMT-0.5
Bed nucleus of the stria terminalisipsiBST-0.5
Bed nucleus of the stria terminalis magnocellular nucleusipsiBSTmc-0.5
Bed nucleus of the stria terminalis posterolateral partipsiBSTPL-0.5
Bed nucleus of the stria terminalis principal nucleusipsiBSTpr1
Bed nucleus of the stria terminalis ventral partipsiBNSTv-0.5
Globus pallidusipsiGP0
Medial globus pallidusipsiMGP1
Dorsal coreipsiAcbCd1
Caudate putamenipsiCPu2.5
Subthalamic nucleusipsiSTh0
Rostral part of frontal cortex area 3ipsiRFr3-0.5
Parietal cortex area 1ipsiPar1-0.5
Somatomotoric regionsipsiSMR-0.5
Lateral agranular prefrontal cortexipsiAGl2
Rostral part of lateral agranular prefrontal cortex layer 5ipsiAGlrL51
Whisker motor cortex subfieldsipsiWMCxS3
Motoric regions layer 5ipsiMRL5-0.5
Motoric regions layer 6ipsiMRL6-0.5
Medial agranular prefrontal cortexipsiAGm2
Medial agranular prefrontal cortex rostral part layer 5ipsirAGmL51
Primary somatosensory cortexipsiS11.5
Primary somatosensory cortex layer 5ipsiS1L5-0.5
Secondary somatosensory cortex layer 5ipsiS2L5-0.5
Primary visual cortexipsiV10
Secondary visual cortexipsiV20
Secondary visual cortex layer 5ipsiV2L5-0.5
Lateral cervical nucleusipsiLatC2
Spinal cord layer 6 C1ipsiSCL6C1-0.5
Spinal cord layer 3 C1ipsiSCL3C12
Spinal cord layer 4 C1ipsiSCL4C12
Spinal cord layer 1 C1ipsiSCL1C12
Spinal cord layer 2 C1ipsiSCL2C12
Spinal cord layer 7 C1ipsiSCL7C1-0.5
Spinal cord layer 6 C2ipsiSCL6C2-0.5
Spinal cord layer 3 C2ipsiSCL3C21
Spinal cord layer 4 C2ipsiSCL4C21
Spinal cord layer 1 C2ipsiSCL1C21
Spinal cord layer 2 C2ipsiSCL2C21
Spinal cord layer 7 C2ipsiSCL7C2-0.5
Spinal cord layer 6 C3ipsiSCL6C3-0.5
Spinal cord layer 7 C3ipsiSCL7C3-0.5
Thoracal segment 6ipsiT62
Thoracal segment 7ipsiT72
Thoracal segment 8ipsiT82
Thoracal segment 9ipsiT92
Lumbar segment 6ipsiL61.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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