University of Rostock

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Rat connectome



Substantia nigra medial part right


Abbreviation
SNM
Color       
Superior regionsSubstantia nigra A9

SynonymsAbbr.Language
Substantia nigra medial partSNMEng
Medial portion of the substantia nigra Eng
Middle part of substntia nigra Eng

SubregionsSide
Rostral one-third of the medial substantia nigraright
Substantia nigra medial thirdright

Output to

NameSideAbbr.WeightDetails
Oculomotor systemipsiOCS-0.5
TectumipsiTEC-0.5
Superior colliculusipsiSC-0.5
Tegmental areaipsiTGA-0.5
Ventral tegmental area A10ipsiVTA0.5
Islands of Calleja central coreipsiICjc3
Islands of Calleja medial partipsiICjm1
Nucleus of the vertical limb of the diagonal band dorsolateral partipsiVDBDL2
Nucleus of the vertical limb of the diagonal band rostral partipsiVDBR2
Basal nucleus Meynert caudal partipsiBca1
Substantia innominataipsiSI2.5
Substantia innominata caudal aspectipsiSIc2
ThalamusipsiT-0.5
Ventromedial thalamic nucleus medial partipsiVMm-0.5
Intralaminar nucleiipsiILN-0.5
Amygdaloid complexipsiAC-0.5
Basal nucleusipsiBnc2
Basolateral amygdaloid nucleusipsiBL2
Posterior part of the lateral nucleusipsiLAP1
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL3
Bed nucleus of the stria terminalis medial divisionipsiBSTM3
Central amygdaloid nucleusipsiCe2
Anterior amygdaloid areaipsiAA1
Medial amygdaloid nucleusipsiMe2
Intercalated massesipsiIM2
ClaustrumipsiCl1
Caudal globus pallidusipsiGPc2
Globus pallidus anterior portionipsiGPAp1.5
Ventral pallidum medial partipsiVPm1
Ventral pallidum rostromedial partipsiVPrm2
Accumbens nucleusipsiAc2
Accumbens nucleus coreipsiAcbC2.5
Accumbens nucleus ventral regionsipsiAcV2
Caudomedial accumbensipsiAcbCM2
Lateral nucleus accumbensipsiAcl2
Caudate putamenipsiCPu1.5
Dorsomedial striatumipsiCPudm2
Medial striatumipsiCPum3
Caudal striatumipsiCPuc-0.5
Central striatumipsiCPuce2
Dorsal striatumipsiCPud-0.5
Mediodorsal striatumipsiCPuMD1.5
Rostrolateral striatumipsiCPurl2
Rostromedial striatumipsiCPurm3
Ventromedial striatumipsiCPuvm2
Caudate putamen tailipsiCPuT3
Middle caudate putamenipsiCPuMi-0.5
Lateral striatumipsiCPul-0.5
Piriform cortexipsiPir-0.5
Lateral piriform cortexipsiPirLa2
Cingulate cortexipsiCg2
Dorsal anterior cingulate cortexipsiDACC-0.5
Prelimbic cortexipsiPrL-0.5
Infralimbic cortexipsiIL-0.5
Frontal association cortexipsiFrA-0.5
Frontal cortex area 1ipsiFr12
Suprarhinal regionipsiSRR1.5
Frontal polar cortex lateral partipsiFPl2
Agranular insular cortexipsiAI2
Agranular insular cortex dorsal part superficial layersipsiAIDsL1
Prefrontal cortexipsiPFC2
Prefrontal cortex supragenual partipsisgPFC-0.5
Pregenual sector of the prefrontal cortexipsipgPFC2
Medial prefrontal cortexipsimPFC1
Medial agranular prefrontal cortexipsiAGm-0.5
Olfactory bulb A16ipsiMOB1.5
External plexiform layer of the olfactory bulbipsiOBepl2
Glomerular layer of the olfactory bulbipsiOBglo0
Granular cell layer of the olfactory bulbipsiOBgra2
Internal plexiform layer of the olfactory bulbipsiOBipl2
Mitral cell layer of the olfactory bulbipsiMi2
Anterior olfactory nucleusipsiAON2
Anterior olfactory nucleus dorsal partipsiAONd1.5
Anterior olfactory nucleus lateral partipsiAONl1.5
Olfactory tubercleipsiTuO3
Olfactory tubercle lateral partipsiTuOL2
Septal regionipsiSER2
Lateral septal nucleusipsiLS2

Input from

NameSideAbbr.WeightDetails
Tuberomammillary nucleuscontraTuM-0.5
Tuberomammillary nucleus lateral partcontraTuML-0.5
Ventral tuberomammillary nucleuscontraVTM-0.5
Posterior subdivision of the tuberomammillary nucleuscontraTuMP-0.5
Tuberomammillary nucleus tuberal partcontraTuMT-0.5
Tuberomammillary nucleus interstitial partcontraTuMis-0.5
Central gray pons partipsiCGP-0.5
Superior colliculusipsiSC1
Superior colliculus intermediate layersipsiSCi0.5
Intermediate white layer of the superior colliculusipsiInWh2
Superior colliculus deep layersipsiSCd0.5
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Dorsal raphe nucleusipsiDR-0.5
Basal nucleus MeynertipsiB2
Substantia innominataipsiSI2
Tuberomammillary nucleusipsiTuM-0.5
Tuberomammillary nucleus lateral partipsiTuML-0.5
Ventral tuberomammillary nucleusipsiVTM-0.5
Posterior subdivision of the tuberomammillary nucleusipsiTuMP-0.5
Tuberomammillary nucleus tuberal partipsiTuMT-0.5
Tuberomammillary nucleus interstitial partipsiTuMis-0.5
Central amygdaloid nucleus lateral divisionipsiCeL1
Central amygdaloid nucleus medial divisionipsiCeM-0.5
Central amygdaloid nucleus medial division rostral partipsiCeMR2
Central amygdaloid nucleus ventral partipsiCeV1
Globus pallidusipsiGP2
Caudal globus pallidusipsiGPc-0.5
Rostral globus pallidusipsiGPr2
Accumbens nucleusipsiAc0
Accumbens nucleus central core regionipsiAcbCC-0.5
Caudodorsal part of the accumbens nucleusipsiAcCD-0.5
Caudate putamenipsiCPu3
Medial striatumipsiCPum3
Caudal striatumipsiCPuc1
Dorsal striatumipsiCPud3
Rostral striatumipsiCPur1
Ventral striatumipsiCPuv-0.5
Ventromedial striatumipsiCPuvm-0.5
Middle-third of the caudate putamenipsiCPuMit2
Fundus of the striatumipsiFS0
Subthalamic nucleus lateral partipsiSThl1
Subthalamic nucleus middle partipsiSThm2
Subthalamic nucleus ventral partipsiSThv2.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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