University of Rostock

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Rat connectome



Spinal trigeminal nucleus caudal part layer 1 left


Abbreviation
Sp5CaL1
Color       
Superior regionsSpinal trigeminal nucleus caudal part superficial layers

SynonymsAbbr.Language
Spinal trigeminal nucleus caudal part layer 1Sp5CaL1 
Spinal trigeminal nucleus caudal part layer 1Sp5CL1 
Spinal trigeminal nucleus caudal part superficial lamina Eng
Spinal trigeminal nucleus caudal part superficial layerSp5CsLEng

SubregionsSide
Spinal trigeminal nucleus caudal part layer 1 caudolateral partleft
Spinal trigeminal nucleus caudal part layer 1 ventral partleft
Spinal trigeminal nucleus caudal part layer 1 dorsal partleft

Output to

NameSideAbbr.WeightDetails
Parabrachial nucleusipsiPB3
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB-0.5
Lateral parabrachial nucleus caudal partipsiLPBcp3
Lateral parabrachial nucleus ventrolateral partipsiLPBVL2
Parabrachial nucleus caudal partipsiPBca3
Parabrachial nucleus dorsolateral partipsiPBDL3
Parabrachial nucleus ventral part lateral portionipsiPBVL2
Gigantocellular reticular nucleusipsiGi0.5
Gigantocellular reticular nucleus alpha partipsiGiA0.5
Facial nucleusipsi71
Hypoglossal motor nucleusipsi12M1
Principal sensory trigeminal nucleusipsiPr52
Spinal trigeminal nucleus interpolar partipsiSp5I2
Spinal trigeminal nucleus oral partipsiSp5O2
Spinal trigeminal nucleus rostral partipsiSp5ncR2
Nucleus of the solitary tractipsiSol3
Nucleus of the solitary tract rostral partipsiSolro3
Raphe magnus nucleusipsiRMg0.5
Raphe obscurus nucleusipsiROb0.5
Raphe pallidus nucleusipsiRPa0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm0.5
Lateral hypothalamic area rostrocaudal extendipsiLHrce1
Centrolateral thalamic nucleusipsiCL3
Gelatinosus thalamic nucleusipsiG-0.5
Parafascicular thalamic nucleusipsiPF3
Posterior thalamic nuclear groupipsiPo3
Submedius thalamic nucleusipsiSub3
Ventrobasal complexipsiVB1
Ventral posterolateral thalamic nucleusipsiVPL3
Ventral posteromedial thalamic nucleusipsiVPM3
Lateral part of ventral posteromedial thalamic nucleusipsiVPML0.5
Medial part of ventral posteromedial thalamic nucleusipsiVPMm0.5
Ventral posteromedial thalamic nucleus intermediate partipsiVPMi0.5
Ventromedial thalamic nucleusipsiVM3
Intralaminar nucleiipsiILN1
Oval paracentral thalamic nucleusipsiOPC-0.5
Posterior groupipsiPTG-0.5
Parabrachial nucleuscontraPB3
Koelliker Fuse nucleuscontraKF1
Lateral parabrachial nucleuscontraLPB-0.5
Lateral parabrachial nucleus ventrolateral partcontraLPBVL1
Parabrachial nucleus caudal partcontraPBca1
Parabrachial nucleus dorsolateral partcontraPBDL1
Parabrachial nucleus ventral part lateral portioncontraPBVL1
Principal sensory trigeminal nucleuscontraPr51
Spinal trigeminal nucleus interpolar partcontraSp5I1
Spinal trigeminal nucleus oral partcontraSp5O1
Nucleus of the solitary tract rostral partcontraSolro1
Lateral hypothalamic area rostrocaudal extendcontraLHrce2
Gelatinosus thalamic nucleuscontraG-0.5
Posterior thalamic nuclear groupcontraPo3
Submedius thalamic nucleuscontraSub2
Ventrobasal complexcontraVB2
Ventral posterolateral thalamic nucleuscontraVPL2
Ventral posteromedial thalamic nucleuscontraVPM3
Lateral part of ventral posteromedial thalamic nucleuscontraVPML2
Medial part of ventral posteromedial thalamic nucleuscontraVPMm2
Ventral posteromedial thalamic nucleus intermediate partcontraVPMi2
Intralaminar nucleicontraILN2

Input from

NameSideAbbr.WeightDetails
Dorsal periaqueductal grayipsiDPAG3
Dorsolateral periaqueductal grayipsiDLPAG3
Caudal part of the medial periaqueductal grayipsiPAGmc3
Ventral periaqueductal grayipsiVPAG1
Ventrolateral periaqueductal grayipsiVLPAG3
Gigantocellular reticular nucleusipsiGi-0.5
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Paratrigeminal nucleusipsiPa52
Trigeminal ganglionipsi5Gn3
Dorsal raphe nucleusipsiDR3
Raphe magnus nucleusipsiRMg-0.5
Raphe obscurus nucleusipsiROb-0.5
Raphe pallidus nucleusipsiRPa-0.5
Caudal pressor area of the caudal medullaipsiCPAMeObm1
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-0.5
Primary somatosensory cortex barrel fieldipsiS1BF0.5
Adventitia of the middle meningeal arterycontramimea0
Dorsal periaqueductal graycontraDPAG1
Dorsolateral periaqueductal graycontraDLPAG1
Caudal part of the medial periaqueductal graycontraPAGmc1
Ventral periaqueductal graycontraVPAG0.5
Ventrolateral periaqueductal graycontraVLPAG1
Paratrigeminal nucleuscontraPa52
Spinal trigeminal nucleus caudal partcontraSp5C1
Trigeminal ganglioncontra5Gn-0.5
Dorsal raphe nucleuscontraDR1
Primary somatosensory cortexcontraS11
Primary somatosensory cortex barrel fieldcontraS1BF1
Secondary somatosensory cortexcontraS21
Secondary somatosensory cortex lingual nerve areacontraS2Li-0.5
Mylohyoid nerveipsimyhy1
Lower incisoripsiOrgLoi3
Fascial vibrissal follicle complexesipsiFVFC3
Large supraorbital vibrissaeipsiLSuOrW1
Small supraorbital vibrissaeipsiSSuOrW1
Vibrissal follicle complex A1ipsiVFCA10.5
Vibrissal follicle complex A2ipsiVFCA20.5
Vibrissal follicle complex A3ipsiVFCA30.5
Vibrissal follicle complex A4ipsiVFCA40.5
Vibrissal follicle complex B1ipsiVFCB10.5
Vibrissal follicle complex B2ipsiVFCB20.5
Vibrissal follicle complex B3ipsiVFCB30.5
Vibrissal follicle complex B4ipsiVFCB40.5
Vibrissal follicle complex C1ipsiVFCC10.5
Vibrissal follicle complex C2ipsiVFCC20.5
Vibrissal follicle complex C3ipsiVFCC30.5
Vibrissal follicle complex C4ipsiVFCC40.5
Vibrissal follicle complex C5ipsiVFCC50.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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