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Rat connectome



Dorsal periaqueductal gray left


Abbreviation
DPAG
Color       
Superior regionsPeriaqueductal gray

SynonymsAbbr.Language
Dorsal portion of the periaqueductal central grey Eng
Dorsal nucleus of Hamilton Eng
Dorsal periaqueductal grayDPAGEng

SubregionsSide
Dorsal periaqueductal gray caudal partleft
Dorsal periaqueductal gray columnsleft
Rostral part of the dorsal periaqueductal grayleft

Output to

NameSideAbbr.WeightDetails
Perilemniscal zoneipsiPLZ-0.5
Periaqueductal grayipsiPAG-0.5
Superior colliculus caudal part deep layersipsicSCdL3
Medial tegmental fieldipsiMTF-2
Rostromedial tegmental nucleusipsiRMTg2
Substantia nigra lateral partipsiSNL-0.5
Ventral tegmental area A10ipsiVTA2
Dorsal tegmental nucleusipsiDTg-2
Pedunculopontine tegmental nucleus pars compactaipsiPPNC-2
Cerebellar lobule 9ipsiCERL9-0.5
Cerebellar lobule 10ipsiCERL10-0.5
PonsipsiP3
A5 noradrenaline cellsipsiA5-0.5
Locus coeruleusipsiLC3
Pericoerulear regionipsiPCR3
Pontine sublaterodorsal nucleusipsiPsLdn1
Prepositus nucleusipsiPr3
Medial reticular formation dorsal partipsiRFmD3
Ventral mesencephalic reticular formationipsiMRFV-0.5
Pontine reticular nucleusipsiPRN3
Cuneiforme nucleusipsiCnF2
Cuneiforme nucleus caudal partipsiCnFc-0.5
Parabrachial nucleusipsiPB3
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus alpha partipsiGiA3
Gigantocellular reticular nucleus ventral partipsiGiV3
Lateral reticular nucleusipsiLRt3
Lateral reticular nucleus lateral partipsiLRtL3
Medullary reticular nucleusipsiMdD3
Lateral bulbar reticular formationipsiLBRF-0.5
MyelencephalonipsiMYC-2
Ambiguus nucleusipsiAmb3
Facial nucleusipsi73
Hypoglossal nucleusipsi12S3
Juxtatrigeminal areaipsiJx53
Motor trigeminal nucleusipsiMo53
Principal sensory trigeminal nucleus ventrolateral partipsiPr5VL3
Spinal trigeminal nucleus caudal part layer 3ipsiSp5CaL33
Spinal trigeminal nucleus caudal part layer 1ipsiSp5CaL13
Spinal trigeminal nucleus interpolar partipsiSp5I2
Spinal trigeminal nucleus oral partipsiSp5O2
Vestibular nucleiipsiVnc3
Nucleus of the solitary tractipsiSol3
Raphe nucleiipsiRAN3
Ventral part of the central dorsal raphe nucleusipsiDRvcep2
Dorsal raphe nucleus caudal midlineipsiDRcmip-0.5
Raphe magnus nucleusipsiRMg4
Raphe magnus nucleus dorsal partipsiDRMg-0.5
Rostral ventrolateral medullaipsiRVLM-0.5
Inferior oliveipsiIO0
Paragigantocellular reticular nucleusipsiPGi-0.5
Lateral paragigantocellular nucleusipsiLPGi4
Lateral paragigantocellular nucleus juxtafacial partipsiLPGiJ1
Lateral paragigantocellular nucleus retrofacial partipsiLPGirf1
Paragigantocellular reticular nucleus rostral partipsiPGiR-0.5
Paragigantocellular reticular nucleus rostral lateral partipsiPGiRL-2
Paragigantocellular reticular nucleus rostroventral partipsiPGiRV3
Retrofacial paragigantocellular reticular nucleusipsiRPGi1
Juxtafacial paragigantocellular reticular nucleusipsiJPGi3
Rostral ventral medulla oblongataipsiRVMeO2
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-0.5
Sympathoexitatory area rostral to ventrolateral medulla ipsiMeObSe0
Diagonal band of BrocaipsiDBB3
Lateral preoptic areaipsiLPO3
Medial preoptic nucleusipsiMPO0.5
Dorsal regionipsiDHR3
Lateral hypothalamic areaipsiLH3
Anterior hypothalamic areaipsiAHA3
Paraventricular hypothalamic nucleusipsiPa0.5
Centrolateral thalamic nucleusipsiCL1
Parafascicular thalamic nucleusipsiPF1
Mediodorsal thalamic nucleus medial partipsiMDM1
Ventral posterior thalamic complex medial partipsiVPTm-0.5
Ventroposterior lateral thalamic nucleusipsiVPLTNG-0.5
Zona incertaipsiZI3
Lateral habenular nucleusipsiLHb2
Ventrolateral orbital areaipsiVLO0
Geniculate bodyipsiGB-0.5
Olfactory bulb A16ipsiMOB1
Glomerular layer of the olfactory bulbipsiOBglo1
Lumbar segment 6ipsiL63
Sacral segment 1ipsiSa13
Periaqueductal graycontraPAG-0.5
Dorsal periaqueductal graycontraDPAG3
PonscontraP0
Locus coeruleuscontraLC1
Pericoerulear regioncontraPCR1
Pontine sublaterodorsal nucleuscontraPsLdn0.5
Prepositus nucleuscontraPr1
Medial reticular formation dorsal partcontraRFmD1
Pontine reticular nucleuscontraPRN1
Parabrachial nucleuscontraPB1
Gigantocellular reticular nucleuscontraGi3
Gigantocellular reticular nucleus alpha partcontraGiA3
Gigantocellular reticular nucleus ventral partcontraGiV3
Lateral reticular nucleuscontraLRt1
Lateral reticular nucleus lateral partcontraLRtL1
Medullary reticular nucleuscontraMdD1
Ambiguus nucleuscontraAmb1
Facial nucleuscontra71
Hypoglossal nucleuscontra12S1
Juxtatrigeminal areacontraJx51
Motor trigeminal nucleuscontraMo51
Principal sensory trigeminal nucleus ventrolateral partcontraPr5VL1
Spinal trigeminal nucleus caudal part layer 3contraSp5CaL31
Spinal trigeminal nucleus caudal part layer 1contraSp5CaL11
Spinal trigeminal nucleus interpolar partcontraSp5I1
Spinal trigeminal nucleus oral partcontraSp5O1
Vestibular nucleicontraVnc1
Nucleus of the solitary tractcontraSol1
Raphe nucleicontraRAN1
Dorsal raphe nucleus caudal midlinecontraDRcmip-0.5
Raphe magnus nucleuscontraRMg3
Lateral paragigantocellular nucleuscontraLPGi2
Paragigantocellular reticular nucleus rostroventral partcontraPGiRV1
Diagonal band of BrocacontraDBB1
Sinoatrial nodeipsiSinoAtri1
Ganglia around the heartipsiAutoGHeart1
Ventricle muscle wallipsiOrgsCorVenMyo1
RectumipsiOrgRec-10
Gastrocnemius muscleipsiMuscGC3
ClitorisipsiOrgCLi1
Gastrocnemius musclecontraMuscGC2

Input from

NameSideAbbr.WeightDetails
MesencephalonipsiMEC-0.5
Periaqueductal grayipsiPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Ventral midbrain tegmentumipsiVeMT1
Transitional region between ventral tegmental area and the medial substantia nigra pars compactaipsiTRVTAmSNC1
Ventrolateral tegmental areaipsiVLTg1
Laterodorsal tegmental nucleusipsiLDTg-0.5
PonsipsiP3
Pontine reticular nucleusipsiPRN1
Pontine reticular nucleus ventral partipsiPnV-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Cuneiforme nucleus caudal partipsiCnFc3
Cuneiforme nucleus rostral partipsiCnFro1
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Gigantocellular reticular nucleus ventral partipsiGiV-0.5
Medulla oblongataipsiMeOb-0.5
Nucleus of the solitary tract caudal partipsiSolca-0.5
Dorsal raphe nucleusipsiDR-0.5
Dorsal raphe nucleus rostral partipsiDRr1
Dorsal raphe nucleus ventral partipsiDRV1
Median raphe nucleusipsiMnR-0.5
Pontine raphe nucleusipsiPnR-0.5
Raphe magnus nucleusipsiRMg-0.5
Raphe obscurus nucleusipsiROb-0.5
Raphe pallidus nucleusipsiRPa-0.5
Paragigantocellular reticular nucleusipsiPGi-0.5
HypothalamusipsiHYPO-0.5
Dorsomedial hypothalamic nucleusipsiDMHy-0.5
Dorsal regionipsiDHR3
Lateral hypothalamic areaipsiLH3
Anterior hypothalamic areaipsiAHA3
Anterior hypothalamic nucleusipsiAHn4
Dorsal hypothalamic areaipsiDA3
Dorsal hypothalamic nucleusipsiDo-0.5
Posterior hypothalamic areaipsiPHA-0.5
Posterior hypothalamic nucleusipsiPH-0.5
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM3
Rostral extent of the ventromedial hypothalamic nucleus dorsomedial partipsiVMHDMr3
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL3
Arcuate nucleusipsiArc-0.5
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR-0.5
Caudal hypothalamusipsiHYPOC3
Subincertal nucleusipsiSubI-0.5
ThalamusipsiT-0.5
Subparafascicular thalamic nucleusipsiSPF3
Zona incertaipsiZI2
Rostral portion of the zona incerta medial partipsiZImR2
Tuber cinereum areaipsiTC-0.5
Amygdaloid complexipsiAC-0.5
NeocortexipsiNEOCX-0.5
Lateral spinal nucleus C6ipsiLSpC60.5
Area X C6ipsiSCL10C60.5
Spinal cord layer 5 C6ipsiSCL5C60.5
Spinal cord layer 6 C6ipsiSCL6C60.5
Spinal cord layer 4 C6ipsiSCL4C61
Spinal cord layer 1 C6ipsiSCL1C61
Spinal cord layer 7 C6ipsiSCL7C60.5
Spinal cord layer 8 C6ipsiSCL8C60.5
Spinal cord layer 9 C6ipsiSCL9C60.5
Lateral spinal nucleus C7ipsiLSpC70.5
Area X C7ipsiSCL10C70.5
Spinal cord layer 5 C7ipsiSCL5C70.5
Spinal cord layer 6 C7ipsiSCL6C70.5
Spinal cord layer 4 C7ipsiSCL4C71
Spinal cord layer 1 C7ipsiSCL1C71
Spinal cord layer 7 C7ipsiSCL7C70.5
Spinal cord layer 8 C7ipsiSCL8C70.5
Spinal cord layer 9 C7ipsiSCL9C70.5
Lateral spinal nucleus C8ipsiLSpC80.5
Area X C8ipsiSCL10C80.5
Spinal cord layer 5 C8ipsiSCL5C80.5
Spinal cord layer 6 C8ipsiSCL6C80.5
Spinal cord layer 4 C8ipsiSCL4C81
Spinal cord layer 1 C8ipsiSCL1C81
Spinal cord layer 7 C8ipsiSCL7C80.5
Spinal cord layer 8 C8ipsiSCL8C80.5
Spinal cord layer 9 C8ipsiSCL9C80.5
Lateral spinal nucleus T5ipsiLSpT50.5
Area X T5ipsiSCL10T51
Spinal cord layer 5 T5ipsiSCL5T51
Spinal cord layer 6 T5ipsiSCL6T51
Spinal cord layer 4 T5ipsiSCL4T51
Spinal cord layer 1 T5ipsiSCL1T51
Spinal cord layer 7 T5ipsiSCL7T51
Spinal cord layer 8 T5ipsiSCL8T51
Spinal cord layer 9 T5ipsiSCL9T50.5
Lateral spinal nucleus T6ipsiLSpT60.5
Area X T6ipsiSCL10T61
Spinal cord layer 5 T6ipsiSCL5T61
Spinal cord layer 6 T6ipsiSCL6T61
Spinal cord layer 4 T6ipsiSCL4T61
Spinal cord layer 1 T6ipsiSCL1T61
Spinal cord layer 7 T6ipsiSCL7T61
Spinal cord layer 8 T6ipsiSCL8T61
Spinal cord layer 9 T6ipsiSCL9T60.5
Lateral spinal nucleus T7ipsiLSpT70.5
Area X T7ipsiSCL10T71
Spinal cord layer 5 T7ipsiSCL5T71
Spinal cord layer 6 T7ipsiSCL6T71
Spinal cord layer 4 T7ipsiSCL4T71
Spinal cord layer 1 T7ipsiSCL1T71
Spinal cord layer 7 T7ipsiSCL7T71
Spinal cord layer 8 T7ipsiSCL8T71
Spinal cord layer 9 T7ipsiSCL9T70.5
Lateral spinal nucleus L3ipsiLSpL30.5
Area X L3ipsiSCL10L31
Spinal cord layer 5 L3ipsiSCL5L31
Spinal cord layer 6 L3ipsiSCL6L31
Spinal cord layer 4 L3ipsiSCL4L31
Spinal cord layer 1 L3ipsiSCL1L31
Spinal cord layer 7 L3ipsiSCL7L31
Spinal cord layer 8 L3ipsiSCL8L31
Spinal cord layer 9 L3ipsiSCL9L30.5
Lateral spinal nucleus L4ipsiLSpL40.5
Area X L4ipsiSCL10L41
Spinal cord layer 5 L4ipsiSCL5L41
Spinal cord layer 6 L4ipsiSCL6L41
Spinal cord layer 4 L4ipsiSCL4L41
Spinal cord layer 1 L4ipsiSCL1L41
Spinal cord layer 7 L4ipsiSCL7L41
Spinal cord layer 8 L4ipsiSCL8L41
Spinal cord layer 9 L4ipsiSCL9L40.5
Lateral spinal nucleus L5ipsiLSpL50.5
Area X L5ipsiSCL10L51
Spinal cord layer 5 L5ipsiSCL5L51
Spinal cord layer 6 L5ipsiSCL6L51
Spinal cord layer 4 L5ipsiSCL4L51
Spinal cord layer 1 L5ipsiSCL1L51
Spinal cord layer 7 L5ipsiSCL7L51
Spinal cord layer 8 L5ipsiSCL8L51
Spinal cord layer 9 L5ipsiSCL9L50.5
Lateral spinal nucleus S1ipsiLSpS10.5
Area X S1ipsiSCL10S11
Spinal cord layer 5 S1ipsiSCL5S11
Spinal cord layer 6 S1ipsiSCL6S11
Spinal cord layer 4 S1ipsiSCL4S11
Spinal cord layer 1 S1ipsiSCL1S11
Spinal cord layer 7 S1ipsiSCL7S11
Spinal cord layer 8 S1ipsiSCL8S11
Spinal cord layer 9 S1ipsiSCL9S10.5
Lateral spinal nucleus S2ipsiLSpS20.5
Area X S2ipsiSCL10S21
Spinal cord layer 5 S2ipsiSCL5S21
Spinal cord layer 6 S2ipsiSCL6S21
Spinal cord layer 4 S2ipsiSCL4S21
Spinal cord layer 1 S2ipsiSCL1S21
Spinal cord layer 7 S2ipsiSCL7S21
Spinal cord layer 8 S2ipsiSCL8S21
Spinal cord layer 9 S2ipsiSCL9S20.5
Lateral spinal nucleus S3ipsiLSpS30.5
Area X S3ipsiSCL10S31
Spinal cord layer 5 S3ipsiSCL5S31
Spinal cord layer 6 S3ipsiSCL6S31
Spinal cord layer 4 S3ipsiSCL4S31
Spinal cord layer 1 S3ipsiSCL1S31
Spinal cord layer 7 S3ipsiSCL7S31
Spinal cord layer 8 S3ipsiSCL8S31
Spinal cord layer 9 S3ipsiSCL9S30.5
Dorsal periaqueductal graycontraDPAG3
Lateral periaqueductal graycontraLPAG3
Cuneiforme nucleus caudal partcontraCnFc1.5
Cuneiforme nucleus rostral partcontraCnFro1
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Lateral hypothalamic areacontraLH0
Dorsal hypothalamic areacontraDA1
Posterior hypothalamic areacontraPHA-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM-0.5
Rostral extent of the ventromedial hypothalamic nucleus dorsomedial partcontraVMHDMr-0.5
Arcuate nucleuscontraArc-0.5
Caudal hypothalamuscontraHYPOC-0.5
Posterior intralaminar thalamic nucleuscontraPIL2
Subparafascicular thalamic nucleuscontraSPF2
Parasubthalamic nucleuscontraPSTh-2
Lateral spinal nucleus C6contraLSpC61
Area X C6contraSCL10C61
Spinal cord layer 5 C6contraSCL5C61
Spinal cord layer 6 C6contraSCL6C61
Spinal cord layer 4 C6contraSCL4C63
Spinal cord layer 1 C6contraSCL1C63
Spinal cord layer 7 C6contraSCL7C61
Spinal cord layer 8 C6contraSCL8C61
Spinal cord layer 9 C6contraSCL9C61
Lateral spinal nucleus C7contraLSpC71
Area X C7contraSCL10C71
Spinal cord layer 5 C7contraSCL5C71
Spinal cord layer 6 C7contraSCL6C71
Spinal cord layer 4 C7contraSCL4C73
Spinal cord layer 1 C7contraSCL1C73
Spinal cord layer 7 C7contraSCL7C71
Spinal cord layer 8 C7contraSCL8C71
Spinal cord layer 9 C7contraSCL9C71
Lateral spinal nucleus C8contraLSpC81
Area X C8contraSCL10C81
Spinal cord layer 5 C8contraSCL5C81
Spinal cord layer 6 C8contraSCL6C81
Spinal cord layer 4 C8contraSCL4C83
Spinal cord layer 1 C8contraSCL1C83
Spinal cord layer 7 C8contraSCL7C81
Spinal cord layer 8 C8contraSCL8C81
Spinal cord layer 9 C8contraSCL9C81
Lateral spinal nucleus T5contraLSpT51
Area X T5contraSCL10T53
Spinal cord layer 5 T5contraSCL5T53
Spinal cord layer 6 T5contraSCL6T53
Spinal cord layer 4 T5contraSCL4T53
Spinal cord layer 1 T5contraSCL1T53
Spinal cord layer 7 T5contraSCL7T53
Spinal cord layer 8 T5contraSCL8T53
Spinal cord layer 9 T5contraSCL9T51
Lateral spinal nucleus T6contraLSpT61
Area X T6contraSCL10T63
Spinal cord layer 5 T6contraSCL5T63
Spinal cord layer 6 T6contraSCL6T63
Spinal cord layer 4 T6contraSCL4T63
Spinal cord layer 1 T6contraSCL1T63
Spinal cord layer 7 T6contraSCL7T63
Spinal cord layer 8 T6contraSCL8T63
Spinal cord layer 9 T6contraSCL9T61
Lateral spinal nucleus T7contraLSpT71
Area X T7contraSCL10T73
Spinal cord layer 5 T7contraSCL5T73
Spinal cord layer 6 T7contraSCL6T73
Spinal cord layer 1 T7contraSCL1T73
Spinal cord layer 4 T7contraSCL4T73
Spinal cord layer 7 T7contraSCL7T73
Spinal cord layer 8 T7contraSCL8T73
Spinal cord layer 9 T7contraSCL9T71
Lateral spinal nucleus L3contraLSpL31
Area X L3contraSCL10L33
Spinal cord layer 5 L3contraSCL5L33
Spinal cord layer 6 L3contraSCL6L33
Spinal cord layer 4 L3contraSCL4L33
Spinal cord layer 1 L3contraSCL1L33
Spinal cord layer 7 L3contraSCL7L33
Spinal cord layer 8 L3contraSCL8L33
Spinal cord layer 9 L3contraSCL9L31
Lateral spinal nucleus L4contraLSpL41
Area X L4contraSCL10L43
Spinal cord layer 5 L4contraSCL5L43
Spinal cord layer 6 L4contraSCL6L43
Spinal cord layer 4 L4contraSCL4L43
Spinal cord layer 1 L4contraSCL1L43
Spinal cord layer 7 L4contraSCL7L43
Spinal cord layer 8 L4contraSCL8L43
Spinal cord layer 9 L4contraSCL9L41
Lateral spinal nucleus L5contraLSpL51
Area X L5contraSCL10L53
Spinal cord layer 5 L5contraSCL5L53
Spinal cord layer 6 L5contraSCL6L53
Spinal cord layer 4 L5contraSCL4L53
Spinal cord layer 1 L5contraSCL1L53
Spinal cord layer 7 L5contraSCL7L53
Spinal cord layer 8 L5contraSCL8L53
Spinal cord layer 9 L5contraSCL9L51
Lateral spinal nucleus S1contraLSpS11
Area X S1contraSCL10S13
Spinal cord layer 5 S1contraSCL5S13
Spinal cord layer 6 S1contraSCL6S13
Spinal cord layer 4 S1contraSCL4S13
Spinal cord layer 1 S1contraSCL1S13
Spinal cord layer 7 S1contraSCL7S13
Spinal cord layer 8 S1contraSCL8S13
Spinal cord layer 9 S1contraSCL9S11
Lateral spinal nucleus S2contraLSpS21
Area X S2contraSCL10S23
Spinal cord layer 5 S2contraSCL5S23
Spinal cord layer 6 S2contraSCL6S23
Spinal cord layer 4 S2contraSCL4S23
Spinal cord layer 1 S2contraSCL1S23
Spinal cord layer 7 S2contraSCL7S23
Spinal cord layer 8 S2contraSCL8S23
Spinal cord layer 9 S2contraSCL9S21
Lateral spinal nucleus S3contraLSpS31
Area X S3contraSCL10S33
Spinal cord layer 5 S3contraSCL5S33
Spinal cord layer 6 S3contraSCL6S33
Spinal cord layer 4 S3contraSCL4S33
Spinal cord layer 1 S3contraSCL1S33
Spinal cord layer 7 S3contraSCL7S33
Spinal cord layer 8 S3contraSCL8S33
Spinal cord layer 9 S3contraSCL9S31

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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