University of Rostock

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Rat connectome



Paratrigeminal nucleus left


Abbreviation
Pa5
Color       
Superior regionsNuclei of the trigeminal complex

SynonymsAbbr.Language
 PSTh 
 PAT 
Paratrigeminal islands Eng
Trigeminal promontorium Eng
Paratrigeminal nucleusPa5Eng
Promontorium of the spinal trigeminal nucleus Eng
Paratrigeminal region Eng

SubregionsSide
Paratrigeminal nucleus caudal partleft
Paratrigeminal nucleus dorsal partleft
Paratrigeminal nucleus intermediate partleft
Paratrigeminal nucleus lateral partleft
Paratrigeminal nucleus medial partleft
Paratrigeminal nucleus rostral partleft
Ventral paratrigeminal nucleusleft

Output to

NameSideAbbr.WeightDetails
Lateroventral part of the central grayipsiCGLV-0.5
Periaqueductal grayipsiPAG3
Inferior colliculusipsiICOL2
Inferior cerebellar peduncleipsiicp-0.5
Superior cerebellar peduncleipsisucep-0.5
Superior cerebellar peduncle lateral tipipsisucepLt2
Locus coeruleusipsiLC1
Probst's tract medullaipsiprbm-2
Ventromedial branch of Probst's bundleipsivmbprb-2
Intermediate reticular nucleusipsiIRt3
Paramedian reticular nucleusipsiPMn-10
Rostroventrolateral reticular nucleusipsiRVL0.5
Rostroventrolateral reticular nucleus rostral partipsiRVLro-0.5
Deep mesencephalic nucleusipsiDpMe1
Peribrachial regionipsiPBR3
Cuneiforme nucleusipsiCnF3
Parabrachial nucleusipsiPB3
Koelliker Fuse nucleusipsiKF3
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus internal partipsiLPBI-0.5
Parabrachial nucleus lateral crescentipsiPBlc3
Parabrachial nucleus caudal partipsiPBca3
Parabrachial nucleus central lateral partipsiPBCeL1.5
Parabrachial nucleus external divison lateral partipsiPBeDL3
Parabrachial nucleus external divison medial partipsiPBeDM2
Parabrachial nucleus medialipsiPBnMe3
Parabrachial nucleus rostral partipsiPBro1
Parabrachial nucleus ventral partipsiPBV-0.5
Parabrachial nucleus ventrolateral partipsiPBveLa1.5
Gigantocellular reticular nucleusipsiGi1
Lateral reticular nucleusipsiLRt1
Lateral reticular nucleus rostral partipsiLRtr-0.5
Medullary reticular nucleusipsiMdD-0.5
Medullary reticular nucleus dorsal partipsiMdDd4
Parvicellular reticular nucleusipsiPCRt2
Trapezoid bodyipsitz-0.5
Ambiguus nucleusipsiAmb-0.5
Area postremaipsiAP0
Principal sensory trigeminal nucleusipsiPr52
Principal sensory trigeminal nucleus dorsal boundaryipsiPr5Db2
Principal sensory trigeminal nucleus dorsomedial partipsiPr5DM2
Spinal trigeminal nucleusipsiSp5nc4
Dorsomedial part of the spinal trigeminal nucleusipsiSp5ncDM3
Spinal trigeminal nucleus caudal part layer 1ipsiSp5CaL12
Spinal trigeminal nucleus interpolar partipsiSp5I0
Spinal trigeminal nucleus oral partipsiSp5O1.5
Spinal trigeminal tractipsisp54
Nucleus of the solitary tractipsiSol3
Nucleus of the solitary tract caudal partipsiSolca3
Nucleus of the solitary tract commissural partipsiSolC3
Nucleus of the solitary tract intermediate partipsiSolIM-0.5
Nucleus of the solitary tract intermediate part parvicellular subdivisionipsiSoliMp-0.5
Nucleus of the solitary tract interstitial partipsiSoli2
Nucleus of the solitary tract medial part caudal zoneipsiSolMc-0.5
Nucleus of the solitary tract rostral partipsiSolro3
Nucleus of the solitary tract ventrolateral partipsiSolVL-0.5
Solitary tractipsisol-2
Dorsal motor nucleus of vagusipsi102
Dorsal motor nucleus of vagus caudal partipsi10C2
Dorsal motor nucleus of vagus lateral partipsi10L2
Dorsal motor nucleus of vagus medial partipsi10M2
Dorsal motor nucleus of vagus rostral partipsi10R2
Rostrocaudal part of the dorsal motor nucleus of vagusipsi10RC-0.5
Caudal ventrolateral medullaipsiCVLM1
Rostral ventrolateral medullaipsiRVLM1
Inferior oliveipsiIO1
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleusipsiPa1
ThalamusipsiT1
Posterior thalamic nuclear groupipsiPo0.5
Submedius thalamic nucleusipsiSub1
Ventral posterior thalamic nucleus parvicellular partipsiVPPC2
Ventral posterolateral thalamic nucleusipsiVPL1
Ventral posteromedial thalamic nucleusipsiVPM1
Ventral portion of the ventral posteromedial thalamic nucleusipsiVVPM-0.5
Ventromedial thalamic nucleusipsiVM-0.5
Lateral thalamic nuclear groupipsiLTNG-0.5
Medial thalamic zoneipsiMTZ-0.5
Posterior groupipsiPTG1
Posteromedial thalamic nucleusipsiPMTN3
Zona incertaipsiZI-0.5
Medial lemniscusipsiml-0.5
Pyramideipsipyra-0.5
Medial reticulospinal pathwayipsimrsp-2
Central amygdaloid nucleusipsiCe-0.5
Globus pallidusipsiGP-0.5
Caudate putamenipsiCPu-0.5
Subthalamic nucleusipsiSTh-0.5
Rostroventrolateral reticular nucleuscontraRVL-0.5
Rostroventrolateral reticular nucleus rostral partcontraRVLro-0.5
Peribrachial regioncontraPBR3
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB3
Lateral parabrachial nucleuscontraLPB0.5
Parabrachial nucleus caudal partcontraPBca2
Gigantocellular reticular nucleuscontraGi1
Lateral reticular nucleuscontraLRt1
Lateral reticular nucleus rostral partcontraLRtr-0.5
Medullary reticular nucleus dorsal partcontraMdDd2
Ambiguus nucleuscontraAmb-0.5
Paratrigeminal nucleuscontraPa52
Spinal trigeminal nucleus caudal part layer 1contraSp5CaL12
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract caudal partcontraSolca0.5
Nucleus of the solitary tract commissural partcontraSolC3
Nucleus of the solitary tract intermediate partcontraSolIM-0.5
Nucleus of the solitary tract interstitial partcontraSoli2
Nucleus of the solitary tract rostral partcontraSolro1
Dorsal motor nucleus of vaguscontra101
Caudal ventrolateral medullacontraCVLM-0.5
Rostral ventrolateral medullacontraRVLM1
ThalamuscontraT1
Ventral posteromedial thalamic nucleuscontraVPM1
Ventromedial thalamic nucleuscontraVM1
Ventromedial crossingcontravmc-2
Nodose ganglionipsiAutoNoG-0.5
Iliac segment of sciatic nervecontrasciiL-0.5
Anterior one-third of the tongueipsiOrgOCATaot-0.5
Posterior one-third of the tongueipsiOrgOCTpot-0.5
Intermediate one-third of the tongueipsiOrgOCTiot-0.5
Parotid glandipsiOrgParG-10
Posterior cricoarytenoid muscleipsiMuscPCA2
Parotid glandcontraOrgParG-10
Pancreas sideipsiOrgsPancs2

Input from

NameSideAbbr.WeightDetails
Caudoventrolateral reticular nucleusipsiCVLR0
Parvicellular reticular nucleusipsiPCRt0
Area postremaipsiAP-0.5
Glossopharyngeal nerveipsi9n3
Cervical trunk of the glossopharyngeal nerveipsi9nct1
Inferior glossopharyngeal ganglionipsi9Sigp2.5
Insular trigeminal-cuneatus lateralis nucleusipsii5CuL0
Trigeminal subnucleus caudalis lamina 1ipsi5SSCL1-0.5
Trigeminal subnucleus caudalis lamina 2oipsi5SSCL2o-0.5
Trigeminal ganglionipsi5Gn3
Mandibular region of the trigeminal ganglion at the level of the entry of the mandibular nerveipsi5GnMaEm3
Caudal area of the ophthalmomaxillary region of the trigeminal ganglionipsi5GnCOM3
Rostral area of the ophthalmomaxillary region of the trigeminal ganglionipsi5GnROM3
Superficial part of the trigeminal ganglionipsi5GnS3
Nucleus of the solitary tractipsiSol1
Caudal nucleus of the solitary tract medial partipsiSolcame1
Nucleus of the solitary tract commissural partipsiSolC0
Nucleus of the solitary tract intermediate partipsiSolIM0
Inferior oliveipsiIO0
Dorsal root ganglion C2ipsiDRGC2-0.5
Dorsal root ganglion C3ipsiDRGC3-0.5
Dorsal root ganglion C4ipsiDRGC4-0.5
Dorsal root ganglion C5ipsiDRGC5-0.5
Dorsal root ganglion C6ipsiDRGC6-0.5
Dorsal root ganglion C7ipsiDRGC7-0.5
Dorsal root ganglion L2ipsiDRGL2-0.5
Caudoventrolateral reticular nucleuscontraCVLR0
Parvicellular reticular nucleuscontraPCRt0
Paratrigeminal nucleuscontraPa52
Spinal trigeminal nucleuscontraSp5nc0
Insular trigeminal-cuneatus lateralis nucleuscontrai5CuL0
Nucleus of the solitary tract commissural partcontraSolC0
Nucleus of the solitary tract intermediate partcontraSolIM0
Inferior olivecontraIO0
Anterior ethmoidal nerveipsiaemn-0.5
Jugular ganglionipsiAutoJG-0.5
Petrosal ganglionipsiAutoPetroG-0.5
Nodose ganglionipsiAutoNoG3
Vagus nerveipsiAutoV3
Greater occipital nerveipsiPNSgo0.5
Inferior alveolar nerveipsiialv3
Mandibulary nerveipsi5V30
Lingual nerveipsi5V3Li3
Maxillary nerveipsi5V20
Ophthalmic nerveipsi5V10
Palatine nerveipsipala3
Superior laryngeal nerveipsisLn1
Soft palateipsiOrgSoPa3
TongueipsiOrgOCT3
Root of the tongueipsiOrgOCrT3
PharynxipsiOrgPhar3
UvulaipsiOrgPharU1
Wall of pharynxipsiOrgWPhar-0.5
Wall of pharynxcontraOrgWPhar-0.5
Stomach wallipsiOrgsStomWS-0.5
CorneaipsiOrgsCorn3
Anterior digastricus muscleipsiMuscADig-10
Posterior digastricus muscleipsiMuscPDig-10
Genioglossus muscleipsiMuscGenioG-10
Geniohyoid muscleipsiMuscGenio-10
Musculus masseteripsiMuscMass-10
Temporal muscleipsiMuscT-10
Pterygoid muscleipsiMuscPterygo-10
Mylohyoid muscleipsiMuscMyhy-10
Styloglossus muscle systemipsiMuscStyG-10
Buccinator muscleipsiMuscBucc-10
PlatysmaipsiMuscPla-10
Zygomatic muscleipsiMuscZygo-10
Hyoglossus muscleipsiMuscHyo-10
Wall of larynxipsiOrgWLary1
Wall of larynxcontraOrgWLary-0.5
LungipsiOrgsLung-10
Trachea sideipsiOrgsTras-10

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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