University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Vagina left


Abbreviation
OrgVag
Color       
Superior regionsReproductive organs female

SynonymsAbbr.Language
VaginaOrgVagEng

SubregionsSide
Vaginal canalleft
Vaginal entranceleft

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG2
Red nucleusipsiR1
A5 noradrenaline cellsipsiA52
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC1
Pontine reticular nucleus caudal partipsiPNC1
Nucleus of the solitary tractipsiSol1
Raphe magnus nucleusipsiRMg2
Raphe pallidus nucleusipsiRPa2
Dorsal paragigantocellular nucleusipsiDPGi2
Lateral paragigantocellular nucleusipsiLPGi3
Medial preoptic areaipsiMPA3
Lateral hypothalamic areaipsiLH1
Ventromedial hypothalamic nucleusipsiVMH0.5
Arcuate nucleusipsiArc3
Paraventricular hypothalamic nucleusipsiPa3
Periventricular hypothalamic nucleusipsiPe1
Bed nucleus of the stria terminalisipsiBST1
Medial amygdaloid nucleusipsiMe1
Lateral septal nucleus dorsal partipsiLSD1
Lateral septal nucleus intermediate partipsiLSI2
Dorsal root ganglion T11ipsiDRGT11-0.5
Dorsal root ganglion T12ipsiDRGT12-0.5
Dorsal root ganglion T13ipsiDRGT13-0.5
Dorsal root ganglion L1ipsiDRGL1-0.5
Dorsal root ganglion L2ipsiDRGL2-0.5
Dorsal root ganglion L3ipsiDRGL3-0.5
Dorsal root ganglion L4ipsiDRGL4-0.5
Dorsal root ganglion L6ipsiDRGL6-0.5
Dorsal root ganglion S1ipsiDRGS1-0.5
Dorsal root ganglion S2ipsiDRGS2-0.5

Input from

NameSideAbbr.WeightDetails
Dorsolateral periaqueductal grayipsiDLPAG-10
Ventrolateral periaqueductal grayipsiVLPAG-10
Ventrolateral periaqueductal gray caudal partipsiPAGvlc-10
A5 noradrenaline cellsipsiA5-10
A7 noradrenaline cellsipsiA7-10
Barringtons nucleusipsiBar-10
Pontine reticular nucleusipsiPRN-10
Koelliker Fuse nucleusipsiKF-10
Gigantocellular reticular nucleus ventral partipsiGiV-10
Subcoeruleus nucleusipsiSubC-10
Nucleus of the solitary tractipsiSol-10
Raphe magnus nucleusipsiRMg-10
Raphe obscurus nucleusipsiROb-10
Raphe pallidus nucleusipsiRPa-10
Ventral lateral medulla oblongataipsiMVL-10
Paragigantocellular reticular nucleusipsiPGi-10
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-10
Medial preoptic areaipsiMPA-10
Medial preoptic nucleusipsiMPO-10
Lateral hypothalamic areaipsiLH-10
Lateral hypothalamic area ventral partipsiLHAvp-10
Dorsal hypothalamic areaipsiDA-10
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL-10
Nucleus paraventricularis parvocellular partipsiPaPaP-10
Dorsolateral paraventricular hypothalamic nucleusipsiPaDL-10
Retrochiasmatic areaipsiRCh-10
Zona incertaipsiZI-10
Lateral lemniscusipsill-10
Bed nucleus of the stria terminalis ventral partipsiBNSTv-10
Medial amygdaloid nucleus caudal partipsiMeC-10
Region around the fornixipsiraf-10
Dorsal horn of spinal cordipsiDHMES-10
Lateral dorsal horn of spinal cordipsiLDHMES-10
Medial dorsal horn of spinal cordipsiMDHMES-10
Lamina 1 of dorsal horn of spinal cordipsisDHMESL1-10
Lamina 2 of dorsal horn of spinal cordipsisDHMESL2-10
Intermediomedial cell columnipsiIMM-10
Sacral parasympathetic nucleusipsiSPSN-10
Ventral horn of spinal cordipsiVHMES-10
Intermediate gray regionipsiiMGR-10
Dorsal gray commissure of the spinal cordipsiMESdgc-10
ClitorisipsiOrgCLi-10

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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