University of Rostock

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Rat connectome



Dorsal paragigantocellular nucleus left


Abbreviation
DPGi
Color       
Superior regionsParagigantocellular reticular nucleus

SynonymsAbbr.Language
Dorsal paragigantocellular regionDPGiEng
Paragigantocellular nucleus dorsal partPGRNdEng
Dorsal paragigantocellular fieldDPGiEng
Nucleus reticularis paragigantocellularis dorsalisRPgcdEng
Dorsal paragigantocellular nucleusDPGiEng
Nucleus paragigantocellularis pars dorsalis Eng
Dorsal paragigantocellular area Eng

SubregionsSide
Caudal part of the dorsal paragigantocellular nucleusleft
Dorsal paragigantocellular nucleus rostral partleft
Lateral part of the dorsal paragigantocellular nucleusleft

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC-0.5
Central grayipsiCG-0.5
Medial longitudinal fasciculusipsimlf-2
Interstitial nucleus of medial longitudinal fasciculusipsiIMLF-0.5
Nucleus of DarkschewitschipsiDk-0.5
Oculomotor nucleusipsi31
Medial accessory oculomotor nucleusipsiMA3-0.5
Rostral interstitial nucleus of medial longitudinal fasciculusipsiRI-0.5
Ventrolateral periaqueductal grayipsiVLPAG3
Red nucleusipsiR3
Central tegmental field lateral partipsiTGACL0.5
Substantia nigra A9ipsiSN-0.5
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Edinger Westphal nucleusipsiEW1
Paraflocculus ventral partipsiPFlv1
Cerebellar lobule 9ipsiCERL93
Cerebellar lobule 10ipsiCERL103
FlocculusipsiFl1
PonsipsiP-0.5
Locus coeruleusipsiLC3
Locus coeruleus caudal partipsiLCca1
Locus coeruleus rostral partipsiLCRo0
Pontine sublaterodorsal nucleusipsiPsLdn1
Pontine grayipsiPG-0.5
Prepositus nucleusipsiPr1
Deep mesencephalic nucleus dorsal partipsiDpMeD1
Pontine reticular nucleusipsiPRN2
Ventrolateral pontine reticular formationipsivlPRF1
Parabrachial nucleusipsiPB1
Lateral reticular nucleusipsiLRt1
Medullary reticular nucleus dorsal partipsiMdDd1
Parvicellular reticular nucleusipsiPCRt1
Medulla oblongataipsiMeOb-0.5
Ambiguus nucleusipsiAmb1
Abducens nucleusipsi6-2
Facial nucleusipsi7-2
Facial nucleus dorsolateral subnucleusipsi7DL-0.5
Facial nucleus lateral subnucleusipsi7L-0.5
Hypoglossal nucleusipsi12S1
Mesencephalic trigeminal nucleusipsiMe5-0.5
Motor trigeminal nucleusipsiMo53
Principal sensory trigeminal nucleusipsiPr51
Spinal trigeminal nucleusipsiSp5nc1
Paratrochlear nucleusipsiPa4-0.5
Trochlear nucleusipsi4-0.5
Vestibular nucleiipsiVnc1
Vestibular ductsipsivd1
Nucleus of the solitary tractipsiSol1
Dorsal raphe nucleusipsiDR2
Ventral part of the central dorsal raphe nucleusipsiDRvcep1
Dorsal raphe nucleus dorsal partipsiDRD2
Dorsal raphe nucleus lateral wingipsiDRlw2
Dorsal raphe nucleus median partipsiDRM1
Dorsal raphe nucleus rostral partipsiDRr2
Dorsal raphe nucleus ventral partipsiDRV2
Pontine raphe nucleusipsiPnR-0.5
Cuneate nucleusipsiCu1
Nucleus of RolleripsiRo1
Lateral paragigantocellular nucleusipsiLPGi0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Substantia innominataipsiSI1
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA1
Magnocellular preoptic nucleusipsiMCPO1
Median preoptic nucleusipsiMnPO1
Dorsomedial hypothalamic nucleusipsiDMHy1
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Lateral hypothalamic area [Lateral zone tuberal level]ipsiLHtu0.5
Dorsomedial hypothalamic nucleus anterior partipsiDMA1
Dorsomedial nucleus posterior partipsiDMHp1
Suprachiasmatic nucleusipsiSCh2
Supramammillar nucleusipsiSuM1
Anteroventral thalamic nucleusipsiAV0
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC3
Paracentral thalamic nucleus caudal partipsiPC-c1
Paracentral thalamic nucleus rostral partipsiPC-r0
Parafascicular thalamic nucleusipsiPF-0.5
Parafascicular thalamic nucleus lateral partipsiPFL4
Parafascicular thalamic nucleus medial partipsiPFM2
Rhomboid thalamic nucleusipsiRh1
Posterior thalamic nuclear group dorsocaudal partipsiPoDC1
Mediodorsal thalamic nucleusipsiMD0
Intermediodorsal thalamic nucleusipsiIMD0
Submedius thalamic nucleusipsiSub0
Paratenial thalamic nucleusipsiPT-0.5
Paraventricular thalamic nucleus anterior partipsiPVA0
Paraventricular thalamic nucleus medial partipsiPVM0
Paraventricular thalamic nucleus posterior partipsiPVP0
Reuniens thalamic nucleusipsiRe1
Subfornical organipsiSFO1
Ventrolateral thalamic nucleusipsiVL-0.5
Ventral posterior thalamic nucleus parvicellular partipsiVPPC0
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventral posterolateral thalamic nucleus posterior partipsiVPLP1
Medial part of ventral posteromedial thalamic nucleusipsiVPMm1
Ventromedial thalamic nucleus caudal partipsiVMc3
Intralaminar nucleiipsiILN3
Oval paracentral thalamic nucleusipsiOPC1
Reticular thalamic nucleus lateral partipsiRtL1
Zona incertaipsiZI1
Anterior pretectal nucleusipsiAPT-0.5
TelencephalonipsiTEL-0.5
Bed nucleus of the stria terminalisipsiBST1
Cerebral cortexipsiCEC-0.5
Ventral hippocampal commissureipsivhc1
Cingulate cortexipsiCg3
Frontal cortex area 2ipsiFr23
Prefrontal cortexipsiPFC3
Motoric regionsipsiM2
Sensory regionsipsiSR1
Visual regionsipsiVR3
Precommissural nucleusipsiPrC-0.5
Interpeduncular nucleusipsiIP-0.5
Interpeduncular nucleus rostrodorsal subnucleusipsiIPRrd-0.5
Lateral septal nucleusipsiLS1
Ventrolateral funiculusipsivLF0.5
Cervical segment 1ipsiCS11
Cervical segment 2ipsiCS23
Cervical segment 3ipsiCS33
Cervical segment 5ipsiCS50.5
Ventral horn C5ipsiVHC50.5
Cervical segment 6ipsiCS6-0.5
Cervical segment 7ipsiCS7-0.5
Cervical segment 8ipsiCS8-0.5
Thoracal segment 1ipsiT1-0.5
Thoracal segment 3ipsiT31
Thoracal segment 5ipsiT51
Thoracal segment 6ipsiT61
Thoracal segment 10ipsiT101
Thoracal segment 12ipsiT121
Lumbar segment 1ipsiL1-0.5
Lumbar segment 2ipsiL20.5
Spinal cord layer 4 L2ipsiSCL4L20.5
Ventral horn L2ipsiVHL20.5
Lumbar segment 3ipsiL3-0.5
Spinal cord border between layer 10 and layer 7 L3ipsiSCLb10L7L31
Lumbar segment 4ipsiL4-0.5
Spinal cord border between layer 10 and layer 7 L4ipsiSCLb10L7L41
Lumbar segment 5ipsiL5-0.5
Lumbar segment 6ipsiL6-0.5
MesencephaloncontraMEC-0.5
Ventrolateral periaqueductal graycontraVLPAG2
PonscontraP-0.5
Pontine sublaterodorsal nucleuscontraPsLdn2
Prepositus nucleuscontraPr3
Medial reticular formationcontraRFm-0.5
Deep mesencephalic nucleus dorsal partcontraDpMeD2
Pontine reticular nucleuscontraPRN2
Ventrolateral pontine reticular formationcontravlPRF1
Medullary reticular nucleus dorsal partcontraMdDd1
Parvicellular reticular nucleuscontraPCRt2
Medulla oblongatacontraMeOb-0.5
Hypoglossal nucleuscontra12S0.5
Dorsal raphe nucleus lateral wingcontraDRlw2
Lateral paragigantocellular nucleuscontraLPGi0.5
Dorsomedial hypothalamic nucleus anterior partcontraDMA1
Dorsomedial nucleus posterior partcontraDMHp1
Posterior thalamic nuclear group dorsocaudal partcontraPoDC1
Subfornical organcontraSFO-0.5
Ventral posterolateral thalamic nucleus posterior partcontraVPLP1
Medial part of ventral posteromedial thalamic nucleuscontraVPMm1
Reticular thalamic nucleus lateral partcontraRtL1
TelencephaloncontraTEL-0.5
Ventrolateral funiculuscontravLF0.5
Cervical segment 1contraCS12
Cervical segment 2contraCS23
Cervical segment 3contraCS33
Cervical segment 5contraCS50.5
Spinal cord layer 4 C5contraSCL4C50.5
Ventral horn C5contraVHC50.5
Spinal cord layer 4 C7contraSCL4C70.5
Thoracal segment 3contraT33
Thoracal segment 5contraT53
Thoracal segment 6contraT63
Thoracal segment 10contraT103
Thoracal segment 12contraT123
Lumbar segment 2contraL20.5
Spinal cord layer 4 L2contraSCL4L20.5
Ventral horn L2contraVHL20.5
Hypoglossal nerveipsi12P2
Sciatic nerveipsisci2
Hypoglossal nervecontra12P2
Intercapsular brown adipose tissueipsiOrgBATi-10
Lumbar epaxial musclesipsiMuscLep-0.5
Bulbospongiosus muscleipsiMuscbsp-0.5
Femoral bone marrowipsiOrgSkFemM2
KidneyipsiOrgsKid-0.5
SpleenipsiOrgSPL1
KidneycontraOrgsKid-0.5
SpleencontraOrgSPL-0.5

Input from

NameSideAbbr.WeightDetails
Ventrolateral periaqueductal grayipsiVLPAG2
Superior colliculus superficial layersipsiSCs0
Superior colliculus intermediate layersipsiSCi0
Superior colliculus deep layersipsiSCd0
Pedunculopontine tegmental nucleusipsiPPTg3
Pontine sublaterodorsal nucleusipsiPsLdn2
Prepositus nucleusipsiPr1
Pontine reticular nucleusipsiPRN3
Ventrolateral pontine reticular formationipsivlPRF2
Medullary reticular nucleus dorsal partipsiMdDd3
Vestibular nucleiipsiVnc2
Superior vestibular nucleusipsiSuVe-0.5
Medial vestibular nucleusipsiMVe3
Lateral vestibular nucleusipsiLVe3
Dorsomedial hypothalamic nucleusipsiDMHy0
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR0.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area dorsal partipsiLHd0.5
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0.5
Lateral hypothalamic area perifornical partipsiPFx2
Lateral hypothalamic area ventral partipsiLHAvp0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Periventricular zoneipsiPVZ0
Medial part of the caudal perifornical areaipsiPeFCM0.5
Lateral part of the caudal perifornical areaipsiPeFCL1
Anterior cingulate cortexipsiACC3
Frontal cortex area 2ipsiFr20.5
Motoric regionsipsiM3
Medial agranular prefrontal cortexipsiAGm3
Medial agranular prefrontal cortex caudal partipsicAGm3
Ventrolateral periaqueductal graycontraVLPAG1
Superior colliculus superficial layerscontraSCs1
Superior colliculus intermediate layerscontraSCi0
Superior colliculus deep layerscontraSCd0
Pontine sublaterodorsal nucleuscontraPsLdn2
Prepositus nucleuscontraPr1
Pontine reticular nucleuscontraPRN2
Ventrolateral pontine reticular formationcontravlPRF1
Medullary reticular nucleus dorsal partcontraMdDd2
Vestibular nucleicontraVnc2
Medial vestibular nucleuscontraMVe3
Dorsomedial hypothalamic nucleuscontraDMHy0
Perifornical hypothalamic area [Preoptic anterior region]contraPFxPAR-0.5
Lateral hypothalamic area dorsal partcontraLHd-0.5
Lateral hypothalamic area ventral partcontraLHAvp-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM0
Periventricular zonecontraPVZ0
Medial part of the caudal perifornical areacontraPeFCM-0.5
Lateral part of the caudal perifornical areacontraPeFCL-0.5
Motoric regionscontraM3
Medial agranular prefrontal cortexcontraAGm3
TongueipsiOrgOCT-10
Anterior digastricus muscleipsiMuscADig-10
Posterior digastricus muscleipsiMuscPDig-10
Genioglossus muscleipsiMuscGenioG-10
Geniohyoid muscleipsiMuscGenio-10
Musculus masseteripsiMuscMass-10
Temporal muscleipsiMuscT-10
Pterygoid muscleipsiMuscPterygo-10
Mylohyoid muscleipsiMuscMyhy-10
Styloglossus muscle systemipsiMuscStyG-10
Buccinator muscleipsiMuscBucc-10
PlatysmaipsiMuscPla-10
Zygomatic muscleipsiMuscZygo-10
Hyoglossus muscleipsiMuscHyo-10
ClitorisipsiOrgCLi2
VaginaipsiOrgVag2
Trachea sideipsiOrgsTras4

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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