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Rat connectome



Medial amygdaloid nucleus left


Abbreviation
Me
Color       
Superior regionsMedial extended amygdala

SynonymsAbbr.Language
Medial amygdaloid cortex  
Nucleus medialisNM 
Nucleus medialis amygdalae  
Nucleus amygdaloideus medialis  
Medial amygdaloid complexMEA 
Medial nucleus amygdalaMEAEng
Medial amygdaloid nucleusMeEng
Medial amygdalaMeAEng
Nucleus amygdalae medialisMeALat
Medial nucleus of the amygdala  
Medial cortical amygdaloid nucleus  
Medial nucleusMEng
 AMEEng
Medial amygdalar nucleusAmMe 

SubregionsSide
Medial amygdaloid nucleus anterior partleft
Medial amygdaloid nucleus anterodorsal partleft
Medial amygdaloid nucleus anteroventral partleft
Medial amygdaloid nucleus basal partleft
Medial amygdaloid nucleus caudal partleft
Medial amygdaloid nucleus central divisionleft
Medial amygdaloid nucleus dorsal tipleft
Medial amygdaloid nucleus intermediate levelleft
Medial amygdaloid nucleus lateral partleft
Medial amygdaloid nucleus medial partleft
Medial amygdaloid nucleus posterior partleft
Medial amygdaloid nucleus posterodorsal partleft
Medial amygdaloid nucleus posteroventral partleft
Medial amygdaloid nucleus rostral partleft
Medial amygdaloid nucleus rostrodorsal partleft
Medial amygdaloid nucleus rostromedial partleft
Medial amygdaloid nucleus rostroventral partleft
Medial amygdaloid nucleus ventral partleft
Medial amygdaloid nucleus dorsolateral partleft
Anteroposterior part of the medial amygdaloid nucleusleft
Superficial part of the medial amygdalaleft
Medial amygdaloid nucleus layer 1left
Medial amygdaloid nucleus rostroanterodorsal partleft
Medial amygdaloid nucleus midlevelsleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG1
Central gray medial partipsiCGMe1
Central gray mesencephalic part inferior colliculus levelipsiCGMinf0.5
Central gray mesencephalic part intercollicular levelipsiCGMint0.5
Central gray mesencephalic part superior colliculus levelipsiCGMsc0.5
Nuclei of the lateral lemniscusipsiNLL1
Periaqueductal grayipsiPAG2
Dorsolateral periaqueductal grayipsiDLPAG1
Dorsomedial periaqueductal grayipsiDMPAG1
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray medial partipsiPAGm1
Ventrolateral periaqueductal grayipsiVLPAG3
Superior colliculusipsiSC-0.5
Central tegmental field dorsal partipsiTGACd0
Rostromedial tegmental nucleusipsiRMTg1
Ventral midbrain tegmentumipsiVeMT0
Substantia nigra compact partipsiSNC1.5
Substantia nigra lateral partipsiSNL1.5
Substantia nigra reticular partipsiSNR0
Ventral tegmental area A10ipsiVTA2
Ventral tegmental area A10 caudal partipsiVTAcp0.5
Ventral tegmental area rostral partipsiVTAR0.5
Peripeduncular nucleusipsiPP-0.5
Middle part of the retrorubral fieldipsiRRmi0
Laterodorsal tegmental nucleusipsiLDTg2
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleusipsiDTg1
Pedunculopontine tegmental nucleusipsiPPTg2
Paraflocculus ventral partipsiPFlv1
FlocculusipsiFl1
Locus coeruleusipsiLC2
Reticular systemipsiRF-0.5
Parabrachial nucleusipsiPB1
Lateral parabrachial nucleusipsiLPB1
Lateral parabrachial nucleus external partipsiLPBE1
Lateral parabrachial nucleus external part inner portionipsiLPBEip2
Lateral parabrachial nucleus superior lateral partipsiPBls2
Rostral parts of the lateral parabrachial nucleus ventral partipsiLPBVR3
Rostral portion of the parabrachial nucleus central lateral partipsiPBCeLR3
Parabrachial nucleus medialipsiPBnMe2
Parabrachial nucleus waist partipsiPBW2
Medulla oblongataipsiMeOb0
Intertrigeminal nucleusipsiI50
Supratrigeminal nucleusipsiSu50
Mesencephalic trigeminal nucleusipsiMe52
Mesencephalic trigeminal nucleus caudal poleipsiMe5cp1
Principal sensory trigeminal nucleusipsiPr50
Spinal trigeminal nucleus caudal partipsiSp5C0
Spinal trigeminal nucleus interpolar partipsiSp5I0
Peritrigeminal zoneipsiP50
Nucleus of the solitary tractipsiSol0.5
Nucleus of the solitary tract caudal partipsiSolca1
Nucleus of the solitary tract medial partipsiSolM0
Dorsal motor nucleus of vagusipsi101
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC1.5
Dorsal raphe nucleus central partipsiDRcep1.5
Ventral part of the central dorsal raphe nucleusipsiDRvcep1
Corsal part of the central dorsal raphe nucleusipsiDRDcep1
Dorsal raphe nucleus dorsal partipsiDRD2
Dorsal raphe nucleus lateral wingipsiDRlw1.5
Dorsal raphe nucleus ventral partipsiDRV2
Median raphe nucleusipsiMnR2
Ventral lateral medulla oblongataipsiMVL-0.5
Caudal ventrolateral medullaipsiCVLM-0.5
Paragigantocellular reticular nucleusipsiPGi1
Endopiriform systemipsiEnN-1
Caudal endopiriform regionipsiCEn-0.5
Central endopiriform systemipsiCEnN-0.5
Dorsal endopiriform nucleusipsiDEn-1
Rostral endopiriform regionipsiREn-0.5
Diagonal band of BrocaipsiDBB3
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Substantia innominataipsiSI3
Substantia innominata anterior partipsiSIA2
Substantia innominata dorsal partipsiSID3
Substantia innominata posterior partipsiSIP3
Substantia innominata ventral partipsiSIV3
Preoptic regionipsiPREO3
Lateral preoptic areaipsiLPO1
Lateral preoptic area medial partipsiLPOm3
Medial preoptic areaipsiMPA3
Preoptic nucleusipsiPREn-1
Lateral preoptic nucleusipsiLPN0.5
Magnocellular preoptic nucleusipsiMCPO3
Medial preoptic nucleusipsiMPO3
Median preoptic nucleusipsiMnPO0
Ventrolateral preoptic nucleusipsiVLPO2
Ventromedial preoptic nucleusipsiVMPO-0.5
Tenia tectaipsiTT2
HypothalamusipsiHYPO2
Dorsomedial hypothalamic nucleusipsiDMHy3
Dorsomedial hypothalamic nucleus non-compact partipsiDMHyncp0.5
Posterior region [Lateral division of the hypothalamus]ipsiPReg-1
Lateral hypothalamic area medial part [Preoptic anterior region]ipsiLHAmpar3
Preoptic medial regionipsiPMeR3
Lateral hypothalamic areaipsiLH4
Lateral hypothalamic area anterior partipsiLHAa1
Lateral hypothalamic area posterior partipsiLHAp2
Lateral hypothalamic nucleusipsiLHN0.5
Tuberal region of lateral hypothalamusipsiTuLH0.5
Tuberal division of the lateral hypothalamic areaipsiLHTC-0.5
Tuberal nucleusipsiTU3
Lateral tuberal nucleusipsiLTUN-0.5
Lateral zone of the hypothalamus peripeduncular regionipsiLHApp3
Mediobasal hypothalamusipsiMeHypo2
Medial division of the hypothalamusipsiMdH-0.5
Anterior hypothalamic areaipsiAHA3
Anterior hypothalamic area anterior partipsiAHAA-0.5
Anterior hypothalamic area posterior partipsiAHAP0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe1
Anterior hypothalamic nucleus rostral zoneipsiAHnR3
Area periventricularis hypothalamica communis [Regio hypothalamus caudalis]ipsiPeRHC1.5
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Parastriatal nucleusipsiPS2.5
Posterior hypothalamic areaipsiPHA3
Posterior hypothalamic nucleusipsiPH2.5
Tuberal area ventral to the fornixipsiTAvf1
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus central partipsiVMHC4
Ventromedial hypothalamic nucleus medial partipsiVMHM0
Ventromedial hypothalamic nucleus posterior partipsiVMHP3
Ventromedial hypothalamic nucleus rostral partipsiVMHR0
Ventromedial hypothalamic nucleus shellipsiVMS3
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL4
Arcuate nucleusipsiArc3
Arcuate nucleus lateral partipsiArcL2
Arcuate nucleus caudal halfipsiArcch-0.5
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR3
Dorsomedial paraventricular hypothalamic nucleusipsiPaDM1
Paraventricular hypothalamic nucleus magnocellular part [Periventricular zone anterior region]ipsiPaAM-1
Paraventricular nucleus of the hypothalamus magnocellular division anterior magnocellular partipsiPaAMa1.5
Paraventricular nucleus of the hypothalamus magnocellular division medial magnocellular partipsiPaAMm0.5
Paraventricular hypothalamic nucleus lateral magnocellular part [Periventricular zone anterior region]ipsiPaLM2
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP0.5
Paraventricular hypothalamic nucleus parvicellular division dorsal partipsiPaPcD1.5
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa1
Paraventricular hypothalamic nucleus medial parvocellular partipsiMPPa-0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP3
Paraventricular hypothalamic nucleus posterior part [Periventricular zone anterior region]ipsiPaPo0.5
Posterior magnocellular subdivision of the paraventricular hypothalamic nucleusipsiPaPoM1
Paraventricular hypothalamic nucleusipsiPa3
Paraventricular hypothalamic nucleus dorsomedial capipsiPadmc0.5
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag1
Paraventricular hypothalamic nucleus magnocellular division between PaLM and PaAMmipsiPaMagb1.5
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo3
Paraventricular hypothalamic nucleus anterior parvicellular subdivisionipsiaPavPo3
Paraventricular hypothalamic nucleus parvocellular division posterior partipsiPavPoP0.5
Paraventricular nucleus medial parvocellular partipsiPaMep1
Paraventricular nucleus anterior partipsiPaan2
Paraventricular nucleus dorsal edgeipsiPaDoE0.5
Paraventricular nucleus dorsal most portionipsiPaDom2
Paraventricular nucleus medial partipsiPame-0.5
Paraventricular nucleus medial part at mid paraventricular hypothalamic nucleus levelipsiPamemi0.5
Paraventricular nucleus medial part at posterior paraventricular hypothalamic nucleus levelipsiPamepo0.5
Peri-paraventricular hypothalamic nucleusipsiPPa2
Ventral perinuclear paraventricular hypothalamic areaipsiPPaV0.5
Paraventricular hypothalamic nucleus surrounding regionipsiPaSurr3
Periventricular hypothalamic nucleusipsiPe1
Preoptic periventricular nucleusipsiPePO-0.5
Suprachiasmatic nucleusipsiSCh2
Supraoptic nucleus [Supraoptic region]ipsiSO3
Supraoptic nucleus dorsal partipsiSOd-0.5
Supraoptic nucleus ventral part [Supraoptic region]ipsiSOV3
Premammillary nucleusipsiPMAN4
Premammillary nucleus dorsal partipsiPMD3
Premammillary nucleus ventral partipsiPMV3
Supramammillar nucleusipsiSuM2
A8 dopamine cells retrorubral group lateral partipsiRRFL0
A8 dopamine cells retrorubral group medial partipsiRRFm0
Perifornical nucleusipsiPeF2
Retrochiasmatic areaipsiRCh2
Dorsochiasmatic areaipsiDRCh2
Anteromedial thalamic nucleus ventral partipsiAMV3
Central medial thalamic nucleusipsiCM2
Paracentral thalamic nucleusipsiPC2
Posterior thalamic nuclear groupipsiPo1.5
Mediodorsal thalamic nucleusipsiMD3
Mediodorsal thalamic nucleus central partipsiMDC1
Mediodorsal thalamic nucleus lateral partipsiMDL-10
Mediodorsal thalamic nucleus medial partipsiMDM1
Midline group of the dorsal thalamusipsiMTN1
Paratenial thalamic nucleusipsiPT2
Paraventricular thalamic nucleusipsiPV2
Paraventricular thalamic nucleus posterior partipsiPVP3
Reuniens thalamic nucleusipsiRe3
Reuniens thalamic nucleus caudomedial divisionipsiRecm1
Reunienes thalamic nucleus rostromedial divisionipsiRerm1
Reuniens thalamic nucleus rostrolateral divisionipsiRerl3
Ventral anterior-lateral complex of the thalamusipsiVAL1
Ventrolateral thalamic nucleusipsiVL3
Ventromedial thalamic nucleusipsiVM3
Intralaminar nucleiipsiILN1
Reticular thalamic nucleus caudal partipsiRtc-10
Reticular thalamic nucleus intermediate partipsiRti-10
Reticular thalamic nucleus rostral partipsiRtr-10
Medial lip of the rostral reticular thalamic nucleusipsiRtrmL2
Subparafascicular thalamic nucleusipsiSPF2
Subparafascicular thalamic nucleus caudal partipsiSPFc2
Subparafascicular thalamic nucleus medial partipsiSPFme1
Subparafascicular thalamic nucleus rostral partipsiSPFr2
Zona incertaipsiZI2
Zona incerta caudal partipsiZIC1
Zona incerta dorsal partipsiZID1
Zona incerta medial tipipsiZImt2
Zona incerta rostral partipsiZIR2
Tuber cinereum areaipsiTC3
HabenulaipsiHAB2
Lateral habenular nucleusipsiLHb3
Medial habenular nucleusipsiMHb1
Lateral lemniscusipsill2
Medial forebrain bundle at the level of the anterior commissureipsimfbac0
Medial forebrain bundle at the level of the lateral preoptic areraipsimfbLpa-2
Medial forebrain bundle at the level of the anterior hypothalamic nucleusipsimfbahn-2
Medial forebrain bundle at the level of the lateral hypothalamusipsimfbLH-2
Medial forebrain bundle at the level of the posterior hypothalamic nucleusipsimfbPH0
Stria medullaris of the thalamusipsism-2
Basal nucleusipsiBnc1
Accessory basal nucleusipsiAB2
Accessory basal nucleus magnocellular divisionipsiABm-3
Accessory basal nucleus parvicellular divisionipsiABp-3
Basal nucleus intermediate divisionipsiBnci-3
Basal nucleus magnocellular partipsiBmc-3
Basal nucleus parvicellular partipsiBpc-3
Basolateral amygdaloid nucleusipsiBL-0.5
Anterior basolateral nucleusipsiBLA0
Posterior basolateral nucleusipsiBLP0
Basomedial amygdaloid nucleusipsiBM-0.5
Lateral amygdaloid nucleusipsiLA2
Dorsolateral part of the lateral nucleusipsiLaDL-3
Lateral nucleus medial partipsiLAM-3
Ventrolateral part of the lateral nucleusipsiLaVL-3
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM-0.5
Bed nucleus of the stria terminalis anterior ventral areaipsiBSTAV-0.5
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf1
Bed nucleus of the stria terminalis dorsolateral partipsiBSTDL1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL2
Bed nucleus of the stria terminalis medial divisionipsiBSTM3
Bed nucleus of the stria terminalis medial division posteromedial partipsiBSTMPM-0.5
Bed nucleus of the stria terminalis principal nucleusipsiBSTpr2
Dorsal part of rostral bed nucleus of the stria terminalisipsiBSTdro1
Bed nucleus of the stria terminalis rostroventral partipsiBSTRV1
Central amygdaloid nucleusipsiCe2
Central amygdaloid nucleus intermediate divisionipsiCeI-3
Central amygdaloid nucleus lateral divisionipsiCeL-3
Central amygdaloid nucleus lateral division capsular partipsiCeC-3
Central amygdaloid nucleus medial divisionipsiCeM-3
Junction of the bed nucleus of the stria terminalis with the dorsal part of the anterior hypothalamusipsiJBSTDAH1
Anterior amygdaloid areaipsiAA2
Anterior cortical amygdaloid nucleusipsiACo2.5
Posterior amygdaloid nucleusipsiCOAp2
Nucleus of the lateral olfactory tractipsiLOT0
Periamygdaloid complexipsiPAC1
Periamygdaloid complex medial divisionipsiPACm-3
Periamygdaloid complex sulcal divisionipsiPACs2
Medial amygdaloid nucleusipsiMe2
Medial amygdaloid nucleus anterior partipsiMeAn0.5
Medial amygdaloid nucleus caudal partipsiMeC-3
Medial amygdaloid nucleus central dorsal partipsiMeCD-3
Medial amygdaloid nucleus central ventral partipsiMeCV-3
Medial amygdaloid nucleus rostral partipsiMeRo-3
Amygdalohippocampal areaipsiAHi2
Amygdalohippocampal area lateral partipsiAHilp-3
Amygdalohippocampal area medial partipsiAHimp-3
Bed nucleus of the accessory olfactory tractipsiBAOT2
Intercalated nuclei of the amygdalaipsiI2
ClaustrumipsiCl2
Lateral globus pallidusipsiLGP2
Medial globus pallidusipsiMGP3
Peripallidal regionipsiPePa1
Subpallidal regionipsiSuPa1
Ventral pallidumipsiVP2
Ventral pallidum lateral partipsiVPlp1
StriatumipsiSTR-1
Accumbens nucleusipsiAc2
Accumbens nucleus anterolateral partipsiAcAL1
Accumbens nucleus ventral regionsipsiAcV2
Septal pole of the accumbens nucleusipsiAcSe-0.5
Dorsal striatumipsiCPud0
HippocampusipsiHIPP-1
Hippocampal regionsipsiHIPPR-0.5
Field CA1 of hippocampusipsiCA12
SubiculumipsiS2
Subiculum ventral partipsiSv-0.5
Subiculum ventral part molecular layeripsiSvML-0.5
Subiculum ventral part polymorph layeripsiSvPM-0.5
Fornixipsif-2
ParasubiculumipsiPaS2
Entorhinal cortexipsiEnt3
Entorhinal cortex layer 3ipsiEntL31
Entorhinal cortex layer 2ipsiEntL21
Lateral entorhinal cortexipsiLEnt2
Piriform cortexipsiPir3
Prelimbic cortexipsiPrL2
Infralimbic cortexipsiIL2
Infralimbic cortex layer 5ipsiILL5-0.5
Infralimbic cortex layer 3ipsiILL3-0.5
Agranular insular cortex dorsal partipsiAID2
Agranular insular cortex posterior partipsiAIP2
Perirhinal cortexipsiA35-1
Lateral prefrontal cortexipsilPFC0
Medial prefrontal cortexipsimPFC1
Medial agranular prefrontal cortexipsiAGm1
Lateral orbital cortexipsiLO1
Ventral orbital cortexipsiVO1
Anterior commissureipsiac-2
Accessory olfactory bulbipsiAOB1
Accessory olfactory bulb anterior partipsiAOBa-1
Olfactory bulb A16ipsiMOB-0.5
Olfactory tubercleipsiTuO2
Septal regionipsiSER2
Dorsal medial septumipsiDMS-1
Lateral septal nucleusipsiLS3
Lateral septal nucleus caudal partipsiLSc-0.5
Lateral septal nucleus caudal part ventral zoneipsiLScv2
Lateral septal nucleus dorsal partipsiLSD1
Lateral septal nucleus rostral partipsiLSr1
Lateral septal nucleus ventral partipsiLSV1
Septohypothalamic nucleusipsiSHy2
Ventral medial septumipsiVMSe-1
3d ventricleipsi3V-0.5
Top of 3d ventricleipsiT3V1
Lumbar segment 6ipsiL62
Sacral segment 1ipsiSa12
Nuclei of the lateral lemniscuscontraNLL1
Periaqueductal graycontraPAG0
Lateral periaqueductal graycontraLPAG0.5
Periaqueductal gray medial partcontraPAGm0
Ventrolateral periaqueductal graycontraVLPAG0.5
Central tegmental field dorsal partcontraTGACd0
Ventral tegmental area A10contraVTA0
Peripeduncular nucleuscontraPP-0.5
Laterodorsal tegmental nucleuscontraLDTg1
Ventral tegmental nucleuscontraVTg0.5
Dorsal tegmental nucleuscontraDTg0.5
Pedunculopontine tegmental nucleuscontraPPTg0.5
Locus coeruleuscontraLC1
Parabrachial nucleuscontraPB-0.5
Lateral parabrachial nucleuscontraLPB0.5
Nucleus of the solitary tractcontraSol-0.5
Nucleus of the solitary tract caudal partcontraSolca0.5
Dorsal motor nucleus of vaguscontra100.5
Median raphe nucleuscontraMnR0
Ventral lateral medulla oblongatacontraMVL-0.5
Caudal ventrolateral medullacontraCVLM-0.5
Paragigantocellular reticular nucleuscontraPGi-0.5
Lateral preoptic area medial partcontraLPOm0.5
Medial preoptic areacontraMPA1
Medial preoptic nucleuscontraMPO-0.5
Dorsomedial hypothalamic nucleuscontraDMHy0.5
Dorsomedial hypothalamic nucleus non-compact partcontraDMHyncp-0.5
Lateral hypothalamic area medial part [Preoptic anterior region]contraLHAmpar0.5
Lateral zone of the hypothalamus peripeduncular regioncontraLHApp-0.5
Anterior hypothalamic areacontraAHA0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]contraAVPe0
Parastriatal nucleuscontraPS1.5
Ventromedial hypothalamic nucleuscontraVMH2
Ventromedial hypothalamic nucleus central partcontraVMHC3
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL3
Arcuate nucleuscontraArc2
Dorsomedial paraventricular hypothalamic nucleuscontraPaDM0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAP0.5
Paraventricular hypothalamic nucleuscontraPa0.5
Paraventricular nucleus medial partcontraPame0.5
Suprachiasmatic nucleuscontraSCh0.5
Supraoptic nucleus [Supraoptic region]contraSO0.5
Retrochiasmatic areacontraRCh2
Ventrolateral thalamic nucleuscontraVL0.5
Ventromedial thalamic nucleuscontraVM0.5
Subparafascicular thalamic nucleus caudal partcontraSPFc0.5
Subparafascicular thalamic nucleus medial partcontraSPFme0.5
Subparafascicular thalamic nucleus rostral partcontraSPFr0.5
Stria medullaris of the thalamuscontrasm0
Basolateral amygdaloid nucleuscontraBL-0.5
Bed nucleus of the stria terminaliscontraBST0.5
Bed nucleus of the stria terminalis caudal part caudoventral regioncontraBSTCacv-0.5
Bed nucleus of the stria terminalis caudal part perifornical regioncontraBSTCapf-0.5
Bed nucleus of the stria terminalis lateral divisioncontraBSTL-0.5
Bed nucleus of the stria terminalis medial divisioncontraBSTM-0.5
Bed nucleus of the stria terminalis medial division posteromedial partcontraBSTMPM-0.5
Central amygdaloid nucleuscontraCe-0.5
Medial amygdaloid nucleuscontraMe-0.5
Fornixcontraf0
Entorhinal cortexcontraEnt0
Medial agranular prefrontal cortexcontraAGm1
Septal regioncontraSER0
Lateral septal nucleus caudal part ventral zonecontraLScv1
Septohypothalamic nucleuscontraSHy1
Top of 3d ventriclecontraT3V0.5
ProstateipsiOrgProst-0.5
LungipsiOrgsLung-10

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Dorsal nucleus of the lateral lemniscusipsiDLL-0.5
Dorsolateral periaqueductal grayipsiDLPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Periventricular gray matteripsiPVG-0.5
Substantia nigra A9ipsiSN0.5
Substantia nigra compact partipsiSNC-0.5
Substantia nigra compact part dorsal tieripsiSNCD3
Substantia nigra medial partipsiSNM2
Ventral tegmental area A10ipsiVTA4
Ventral tegmental area A10 dorsal partipsiVTAd2
Parabrachial pigmented nucleusipsiPBP3
Caudal linear nucleus of the rapheipsiCLi-0.5
Peripeduncular areaipsiPPA-3
Peripeduncular nucleusipsiPP2
Retrorubral nucleusipsiRR3
Laterodorsal tegmental nucleusipsiLDTg-0.5
Dorsal tegmental nucleusipsiDTg2
Dorsal tegmental nucleus lateral partipsiDLTN2
Pedunculopontine tegmental nucleusipsiPPTg2
Pedunculopontine tegmental nucleus pars compactaipsiPPNC1
Locus coeruleusipsiLC-0.5
Nucleus incertus pars compactaipsiNIc-0.5
Nucleus incertus pars dissipataipsiNId-0.5
Pontine tegmental fieldipsiPTF-1
Cuneiforme nucleusipsiCnF-0.5
Parabrachial nucleusipsiPB2
Koelliker Fuse nucleusipsiKF0
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus caudal partipsiPBca1
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus external divison lateral partipsiPBeDL1
Parabrachial nucleus external divison medial partipsiPBeDM1
Parabrachial nucleus medialipsiPBnMe2
Parabrachial nucleus ventral part lateral portionipsiPBVL1
Parabrachial nucleus waist partipsiPBW1
C1 adrenaline cellsipsiC12
C3 adrenaline cellsipsiC3-10
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract commissural partipsiSolC-0.5
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus dorsal partipsiDRD0.5
Dorsal raphe nucleus rostral partipsiDRr0
Dorsal raphe nucleus ventral partipsiDRV0.5
Dorsal raphe nucleus ventrolateral partipsiDRVL0.5
Rostral linear nucleus of the rapheipsiRLi3
Median raphe nucleusipsiMnR1
Superior central raphe nucleusipsiCS2
Ventral lateral medulla oblongataipsiMVL1
A1 noradrenergic cellsipsiA12
Lateral paragigantocellular nucleusipsiLPGi-0.5
Endopiriform systemipsiEnN-0.5
Caudal endopiriform regionipsiCEn1
Dorsal endopiriform nucleusipsiDEn-0.5
Middle endopiriform regionipsiMEn1
Preendopiriform regionipsiPEn1
Rostral endopiriform regionipsiREn2
Ventral endopiriform nucleusipsiVEn-0.5
Diagonal band of BrocaipsiDBB2
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Substantia innominataipsiSI1.5
Substantia innominata dorsal partipsiSID1
Substantia innominata ventral partipsiSIV1
Preoptic regionipsiPREO2
Intermediate hypothalamic cell groupsipsiIHCG1.5
Lateral preoptic areaipsiLPO1
Lateral preoptic lateral hypothalamic continuumipsiLPOLH-0.5
Medial preoptic areaipsiMPA3
Medial preoptic area periventricular partipsiMPApv0.5
Preoptic nucleusipsiPREn1.5
Magnocellular preoptic nucleusipsiMCPO1
Medial preoptic nucleusipsiMPO2
Ventral tuberomammillary nucleusipsiVTM-0.5
HypothalamusipsiHYPO3
Dorsomedial hypothalamic nucleusipsiDMHy2
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar0
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR0
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp0
Lateral zoneipsiLHA0
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area lateral partipsiLHAL-0.5
Lateral hypothalamic area medial partipsiLHAm-0.5
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm1
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa0
Lateral hypothalamic area perifornical partipsiPFx2
Lateral hypothalamic area posterior partipsiLHAp2
Lateral hypothalamic area central partipsiLHce-0.5
Tuberal nucleusipsiTU2
Caudomedial hypothalamusipsiCMdH-0.5
Anterior hypothalamic areaipsiAHA2
Anterior hypothalamic area central partipsiAHAC-0.5
Anterior hypothalamic nucleus ventromedial partipsiAHAvm-3
Anterior hypothalamic area immediately caudal to the suprachiasmatic areaipsiAHAcSCh1
Anterior hypothalamic nucleusipsiAHn3
Anterior part of the anterior hypothalamic nucleusipsiAHna-0.5
Anteroventral preoptic nucleusipsiAnV1
Dorsal hypothalamic areaipsiDA3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic areaipsiPHA2
Midlateral posterior hypothalamic areaipsiPHAmL1
Posterior hypothalamic nucleusipsiPH0.5
Posterior hypothalamic nucleus caudal partipsiPHCa1
Posterior hypothalamic nucleus rostral partipsiPHRo2
Subparaventricular zoneipsiSuPZ2
Lateral part of ventral subparaventricular zoneipsiSuPZvL1.5
Subparaventricular zone ventromedial partipsiSuPZvm2
Subparaventricular zone dorsomedial partipsiSuPZdm2
Subparaventricular zone dorsolateral partipsiSuPZdL2
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus central partipsiVMHC4
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM-0.5
Ventromedial hypothalamic nucleus posterior partipsiVMHP2
Ventromedial hypothalamic nucleus shellipsiVMS4
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL4
Arcuate nucleusipsiArc2
Arcuate nucleus lateral partipsiArcL-0.5
Arcuate nucleus medial partipsiArcM-0.5
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR2
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP1
Paraventricular hypothalamic nucleusipsiPa3
Periventricular hypothalamic nucleusipsiPe1
Preoptic periventricular nucleusipsiPePO1
Subparaventricular zone of the hypothalamus perisuprachiasmatic regionipsiSBPVps-3
Suprachiasmatic nucleusipsiSCh1
Suprachiasmatic nucleus dorsomedial partipsiSCnDM1
Suprachiasmatic nucleus ventrolateral partipsiSCnVL1
Suprachiasmatic preoptic nucleusipsiPSCh1
Supraoptic nucleus [Supraoptic region]ipsiSO2
Incerto hypothalamic areaipsiicHYPO1
Lateral mammillary nucleusipsiLM-0.5
Medial mammillary nucleus central partipsiMMnCe-0.5
Premammillary nucleusipsiPMAN4
Premammillary nucleus dorsal partipsiPMD4
Premammillary nucleus ventral partipsiPMV3
Supramammillar nucleusipsiSuM2
A8 dopamine cells retrorubral groupipsiRRF2
Perifornical nucleusipsiPeF3
Perifornical nucleus medial partipsiPeFM-1
Retrochiasmatic areaipsiRCh2
Retrochiasmatic area lateral partipsiRChL-0.5
Retrochiasmatic area immediately caudal to the suprarchiasmatic areaipsiRChcSCh1
ThalamusipsiT3
Interoanteromedial thalamic nucleusipsiIAM-0.5
Central medial thalamic nucleusipsiCM2
Central medial thalamic nucleus caudal partipsiCMca-0.5
Parafascicular thalamic nucleusipsiPF2
Parafascicular thalamic nucleus medial partipsiPFM-0.5
Rhomboid thalamic nucleusipsiRh1.5
Posterior thalamic nuclear groupipsiPo-0.5
Posterior thalamic nuclear group triangular partipsiPoT2
Suprageniculate thalamic nucleusipsiSG2
Mediodorsal thalamic nucleusipsiMD-0.5
Mediodorsal thalamic nucleus medial partipsiMDM-0.5
Midline group of the dorsal thalamusipsiMTN-0.5
Paratenial thalamic nucleusipsiPT3
Paraventricular thalamic nucleusipsiPV3
Paraventricular thalamic nucleus anterior partipsiPVA1
Paraventricular thalamic nucleus caudal partipsiPVca1.5
Paraventricular thalamic nucleus dorsal partipsiPVdo1.5
Paraventricular thalamic nucleus posterior partipsiPVP3
Paraventricular thalamic nucleus rostral partipsiPVr1.5
Paraventricular thalamic nucleus ventral partipsiPVV1.5
Reuniens thalamic nucleusipsiRe3
Reuniens thalamic nucleus anterior partipsiReAn3
Reuniens thalamic nucleus posterior partipsiReP3
Subfornical organipsiSFO0
Ventral posterior thalamic complexipsiVPT2
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Basal nucleus of the ventromedial thalamic nucleusipsiVMB-0.5
Intralaminar nucleiipsiILN-0.5
Posterior intralaminar thalamic nucleusipsiPIL1
Posterior intralaminar thalamic nucleus lateralmost partipsiPILlm2
Posterior parathalamic nucleiipsiPPaTn1
Posteromedian thalamic nucleusipsiPoMn-0.5
Subparafascicular thalamic nucleusipsiSPF2
Subparafascicular thalamic nucleus rostral partipsiSPFr2
Zona incertaipsiZI1
Tuber cinereum areaipsiTC2
Medial habenular nucleusipsiMHb0.5
RetinaipsiRET1
Ansa peduncularisipsiape-2
Lateral lemniscusipsill2
Basal nucleusipsiBnc1
Accessory basal nucleusipsiAB2
Accessory basal nucleus magnocellular divisionipsiABm-3
Accessory basal nucleus parvicellular divisionipsiABp-3
Basal dorsal nucleusipsiBnD-0.5
Basal dorsal nucleus posterior partipsiBnDP-0.5
Basal nucleus intermediate divisionipsiBnci-3
Basal nucleus magnocellular partipsiBmc-3
Basal nucleus parvicellular partipsiBpc-3
Basal nucleus ventral divisonipsiBncV-0.5
Basolateral amygdaloid nucleusipsiBL-0.5
Anterior basolateral nucleusipsiBLA-0.5
Posterior basolateral nucleusipsiBLP0.5
Ventral basolateral nucleusipsiBLV-0.5
Basomedial amygdaloid nucleusipsiBM1
Anterior basomedial nucleusipsiBMA3
Posterior basomedial nucleusipsiBMP2
Lateral amygdaloid nucleusipsiLA2
Dorsolateral part of the lateral nucleusipsiLaDL-3
Lateral nucleus medial partipsiLAM-3
Ventrolateral part of the lateral nucleusipsiLaVL-3
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis anterior lateral areaipsiBSTAL-0.5
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM1
Bed nucleus of the stria terminalis anterior ventral areaipsiBSTAV-0.5
Bed nucleus of the stria terminalis oval nucleusipsiBSTo-10
Bed nucleus of the stria terminalis dorsolateral partipsiBSTDL1
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA-0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM-1
Bed nucleus of the stria terminalis medial division posterior partipsiBSTMP-0.5
Bed nucleus of the stria terminalis posterior divisionipsiBSTP-0.5
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd3
Bed nucleus of the stria terminalis posterior division inferoposterior partipsiBSTPip-0.5
Bed nucleus of the stria terminalis principal nucleusipsiBSTpr-0.5
Dorsal part of rostral bed nucleus of the stria terminalisipsiBSTdro1
Bed nucleus of the stria terminalis rostroventral partipsiBSTRV1
Central amygdaloid nucleusipsiCe-0.5
Central amygdaloid nucleus intermediate divisionipsiCeI-3
Central amygdaloid nucleus lateral divisionipsiCeL1
Central amygdaloid nucleus lateral division capsular partipsiCeC-3
Central amygdaloid nucleus medial divisionipsiCeM1
Medial division of the sublenticular extended amygdalaipsiSLEAm-0.5
Amygdalopiriform transition areaipsiAPir1
Amygdalopiriform transition area medial part rostral aspectipsiAPirMr1
Anterior amygdaloid areaipsiAA-3
Cortical amygdaloid nucleusipsiCAn-0.5
Anterior cortical amygdaloid nucleusipsiACo-0.5
Posterior amygdaloid nucleusipsiCOAp4
Posterior amygdaloid nucleus medial partipsiCOApm3
Posterolateral cortical nucleusipsiPLCo-1
Nucleus of the lateral olfactory tractipsiLOT1
Periamygdaloid complexipsiPAC1
Periamygdaloid complex medial divisionipsiPACm1
Periamygdaloid complex sulcal divisionipsiPACs-3
Medial extended amygdalaipsiMEXA-0.5
Medial amygdaloid nucleusipsiMe2
Medial amygdaloid nucleus caudal partipsiMeC0
Medial amygdaloid nucleus central dorsal partipsiMeCD-3
Medial amygdaloid nucleus central ventral partipsiMeCV-3
Medial amygdaloid nucleus posterodorsal partipsiMePD-0.5
Medial amygdaloid nucleus rostral partipsiMeRo-3
Amygdalohippocampal areaipsiAHi2.5
Amygdalohippocampal area lateral partipsiAHilp-3
Amygdalohippocampal area medial partipsiAHimp-3
Bed nucleus of the accessory olfactory tractipsiBAOT1
Posteromedial cortical nucleusipsiPMCo3
Intercalated nuclei of the amygdalaipsiI-3
ClaustrumipsiCl-0.5
Anterior part of the claustrumipsiACl1
Medial globus pallidusipsiMGP3
Peripallidal regionipsiPePa1
Subpallidal regionipsiSuPa1
Accumbens nucleusipsiAc0.5
Ventral striatumipsiCPuv-0.5
Lateral stripe of the striatumipsiLSS-0.5
Hippocampal regionsipsiHIPPR-0.5
Field CA1 of hippocampusipsiCA12
Field CA1 of hippocampus central partipsiCA1c2
Field CA1 of hippocampus medial partipsiCA1m1
Field CA1 of hippocampus temporal partipsiCA1t1.5
Field CA2 of hippocampusipsiCA20.5
Field CA3 of hippocampusipsiCA3-0.5
SubiculumipsiS2
Intermediate subiculumipsiInSu1
Intermediate subiculum dorsal partipsiSidp0
Intermediate subiculum middle partipsiSimp1
Intermediate subiculum ventral partipsiSivp1
Subiculum dorsal partipsiSd0.5
Subiculum ventral partipsiSv2
Subiculum ventral part caudal subdivisionipsiSvc2.5
Subiculum ventral part rostral subdivisionipsiSvr2
Entorhinal cortexipsiEnt2
Dorsolateral entorhinal cortexipsiDLEnt1
Lateral entorhinal cortexipsiLEnt0
Lateral entorhinal cortex layer 2ipsiLEntL21
Lateral entorhinal cortex ventromedial partipsiVMEAL1
Ventrolateral entorhinal cortexipsiVLENT1
Ventrolateral entorhinal cortex layersipsiVLENTL1
Piriform cortexipsiPir2
Piriform cortex layer 2ipsiPirL2-1
Piriform cortex layer 3ipsiPirL3-1
Cingulate cortex area 1 caudal partipsiCg1c0
Cingulate cortex area 2 caudal partipsiCg2c0
Prelimbic cortexipsiPrL2
Prelimbic cortex dorsal partipsiPrLd0.5
Prelimbic cortex ventral partipsiPrLv1
Infralimbic cortexipsiIL3
Infralimbic cortex rostral partipsiILR-0.5
Frontal cortex area 2ipsiFr20
Temporal association area 2ipsiTe21.5
Temporal association area 2 ventral partipsiTe2V0
Agranular insular cortexipsiAI-1
Agranular insular cortex posterior partipsiAIP3
Agranular insular cortex ventral partipsiAIV3
Perirhinal cortex anterior portionipsiPRha3
Perirhinal cortex dorsal portionipsiPRhd2
Dorsal peduncular cortexipsiDP2.5
Prefrontal cortexipsiPFC-1
Medial prefrontal cortexipsimPFC0
Lateral orbital cortexipsiLO2.5
Medial orbital cortexipsiMO2.5
Ventral orbital cortexipsiVO0
Medial geniculate nucleusipsiMG2
Medial geniculate nucleus medial partipsiMGM2
Accessory olfactory bulbipsiAOB2
Accessory olfactory bulb caudal partipsiAOBc2
Accessory olfactory bulb rostral partipsiAOBr2
Olfactory bulb A16ipsiMOB2
Mitral cell layer of the olfactory bulbipsiMi2.5
Anterior olfactory nucleusipsiAON2
Olfactory tubercleipsiTuO1.5
Lateral septal nucleusipsiLS1.5
Lateral septal nucleus dorsal partipsiLSD-2
Lateral septal nucleus dorsolateral partipsiLSDL3
Lateral septal nucleus intermediate partipsiLSI-2
Lateral septal nucleus rostral part dorsolateral zoneipsiLSrdl1
Lateral septal nucleus ventral partipsiLSV-2
Lateral septal nucleus ventrolateral partipsiLSvl3
Lateral septal nucleus intermediolateral partipsiLSiL3
Anteroposterior extension of the lateral septal nucleusipsiLSap-2
Ventroposterior extension of the lateral septal nucleusipsiLSvp-2
Central graycontraCG0.5
Ventral tegmental area A10contraVTA1
Dorsal tegmental nucleuscontraDTg1
Dorsal tegmental nucleus lateral partcontraDLTN1
Locus coeruleuscontraLC-0.5
Lateral parabrachial nucleuscontraLPB0.5
Parabrachial nucleus medialcontraPBnMe0.5
Nucleus of the solitary tractcontraSol-0.5
Dorsal raphe nucleuscontraDR-0.5
Ventral lateral medulla oblongatacontraMVL2
Intermediate hypothalamic cell groupscontraIHCG-0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Anterior hypothalamic areacontraAHA-0.5
Anterior hypothalamic nucleuscontraAHn0.5
Dorsal hypothalamic areacontraDA-0.5
Lateral part of ventral subparaventricular zonecontraSuPZvL0
Ventromedial hypothalamic nucleuscontraVMH1
Ventromedial hypothalamic nucleus central partcontraVMHC1
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL1
Arcuate nucleuscontraArc-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Medial mammillary nucleus central partcontraMMnCe-0.5
Premammillary nucleuscontraPMAN4
Premammillary nucleus dorsal partcontraPMD4
Paraventricular thalamic nucleuscontraPV-0.5
Medial habenular nucleuscontraMHb0
Accessory basal nucleuscontraAB-0.5
Basal dorsal nucleuscontraBnD1
Basal nucleus ventral divisoncontraBncV1
Basolateral amygdaloid nucleuscontraBL-0.5
Anterior basolateral nucleuscontraBLA-0.5
Basomedial amygdaloid nucleuscontraBM-0.5
Posterior basomedial nucleuscontraBMP1
Cortical amygdaloid nucleuscontraCAn-0.5
Anterior cortical amygdaloid nucleuscontraACo-0.5
Posterior amygdaloid nucleus medial partcontraCOApm1
Posterior amygdaloid nucleuscontraCOAp2
Nucleus of the lateral olfactory tractcontraLOT-0.5
Periamygdaloid complexcontraPAC2.5
Medial amygdaloid nucleuscontraMe-0.5
Infralimbic cortexcontraIL0.5
ClitorisipsiOrgCLi1
VaginaipsiOrgVag1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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