Department of Anatomy University of Rostock

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Rat connectome

Striatal matrix compartment left

Abbreviation	SMC
Color
Superior regions	Caudate putamen

Synonyms	Abbr.	Language
Caudate putamen matrix
Striatal matrix compartment	SMC	Eng

Output to

Name	Side	Abbr.	Weight
Substantia nigra compact part	ipsi	SNC	0
Substantia nigra reticular part	ipsi	SNR	3
Globus pallidus	ipsi	GP	-0.5
Medial globus pallidus	ipsi	MGP	-0.5

Input from

Name	Side	Abbr.	Weight
Substantia nigra compact part	ipsi	SNC	-0.5
Substantia nigra compact part dorsal tier	ipsi	SNCD	-0.5
Substantia nigra compact part ventral tier	ipsi	SNCV	-0.5
Substantia nigra compact part ventral tier dopaminergic neuron population	ipsi	SNCVdopa	0.5
Substantia nigra reticular part	ipsi	SNR	-0.5
Ventral tegmental area A10	ipsi	VTA	-0.5
Retrorubral nucleus	ipsi	RR	-0.5
Central medial thalamic nucleus	ipsi	CM	-0.5
Centrolateral thalamic nucleus	ipsi	CL	-0.5
Paracentral thalamic nucleus	ipsi	PC	-0.5
Parafascicular thalamic nucleus	ipsi	PF	-0.5
Rhomboid thalamic nucleus	ipsi	Rh	-0.5
Intermediodorsal thalamic nucleus	ipsi	IMD	-0.5
Paratenial thalamic nucleus	ipsi	PT	-0.5
Paraventricular thalamic nucleus	ipsi	PV	-0.5
Medial globus pallidus caudal part	ipsi	MGPc	3
Cingulate cortex	ipsi	Cg	-0.5
Anterior cingulate cortex	ipsi	ACC	-0.5
Cingulate cortex layer 3	ipsi	CgL3	2
Cingulate cortex layer 5 b	ipsi	CgL5b	1
Cingulate cortex layer 6	ipsi	CgL6	1
Lateral agranular prefrontal cortex	ipsi	AGl	-0.5
Lateral agranular prefrontal cortex layer 3	ipsi	AGlL3	2
Lateral agranular prefrontal cortex layer 5a	ipsi	AGlL5a	2
Lateral agranular prefrontal cortex layer 5b	ipsi	AGlL5b	2
Lateral agranular prefrontal cortex layer 6	ipsi	AGlL6	1
Medial agranular prefrontal cortex layer 3	ipsi	AGmL3	0
Medial agranular prefrontal cortex layer 5 a	ipsi	AGmL5a	3
Medial agranular prefrontal cortex layer 5 b	ipsi	AGmL5b	1
Medial agranular prefrontal cortex layer 6	ipsi	AGmL6	0
Primary somatosensory cortex	ipsi	S1	-0.5
Primary somatosensory cortex layer 5 a	ipsi	S1L5a	3
Primary somatosensory cortex layer 5 b	ipsi	S1L5b	0
Primary somatosensory cortex layer 6	ipsi	S1L6	0
Primary somatosensory cortex layer 4	ipsi	S1L4	3
Primary somatosensory cortex layer 3	ipsi	S1L3	2
Primary visual cortex	ipsi	V1	-0.5
Cingulate cortex	contra	Cg	-0.5
Lateral agranular prefrontal cortex	contra	AGl	-0.5

Key for weights

Value	Weight
-3	unknown
-2	fibers of passage
-1	not clear
-0.5	exists
0	not present
0.5	very light
1	light / sparse
1.5	light / moderate
2	moderate / dense
2.5	moderate / strong
3	strong
4	very strong