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Rat connectome



Anterior cingulate cortex left


Abbreviation
ACC
Color       
Superior regionsCingulate cortex

SynonymsAbbr.Language
Anterior cingulate cortexACCEng
Anterior cingulate areaACAEng
Area infraradiata Eng
Anterior limbic cortex Eng
Anterior limbic area of cingulate gyrus Eng
Anterior cingulate region Eng

SubregionsSide
Anterior cingulate cortex anterior partleft
Anterior cingulate cortex caudal partleft
Anterior cingulate cortex layersleft
Anterior cingulate cortex medial partleft
Anterior cingulate cortex posterior partleft
Anterior cingulate cortex rostral partleft
Cingulate cortex area 1left
Cingulate cortex area 2left
Cingulate cortex area 3left
Cingulate cortex caudal intermediate partleft
Dorsal anterior cingulate cortexleft
Ventral anterior cingulate cortexleft
Caudal dorsal part of the anterior cingulate cortexleft

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG1
Periaqueductal gray rostrolateral partipsiPAGRL3
Ventrolateral periaqueductal grayipsiVLPAG2
Periventricular gray matteripsiPVG1.5
Red nucleus parvicellular partipsiROC1
TectumipsiTEC1
Superior colliculusipsiSC3
Superior colliculus deep layersipsiSCd1
Substantia nigra compact partipsiSNC0
Substantia nigra reticular partipsiSNR0
Ventral tegmental area A10ipsiVTA4
Interfascicular nucleusipsiIF-0.5
Paranigral nucleusipsiPN-0.5
Middle part of the retrorubral fieldipsiRRmi2
Pedunculopontine tegmental nucleus pars compactaipsiPPNC3
Interstitial nucleus of CajalipsiInC0
Locus coeruleusipsiLC2
Nucleus incertus pars compactaipsiNIc-0.5
Nucleus incertus pars dissipataipsiNId3
Reticulotegmental nucleus of the pons medial partipsiRtTgm3
Pontine nuclei caudal partipsiBPNc0
Medial reticular formationipsiRFm3
Paramedian reticular nucleusipsiPMn3
Nucleus reticularis ventralis pars alphaipsiRVa3
Nucleus reticularis subcuneiformisipsiRScf2
Pontine reticular nucleus oral part medial partipsiPnOm3
Pontine reticular nucleus caudal part alphaipsiPnOca1
Pontine reticular nucleus caudal part betaipsiPnOcb3
Peribrachial regionipsiPBR3
Cuneiforme nucleusipsiCnF3
Medullary reticular nucleusipsiMdD1
Subcoeruleus nucleusipsiSubC2
Perihypoglossal complexipsi12periC2
Mesencephalic trigeminal nucleus caudal poleipsiMe5cp2
Nucleus of the solitary tractipsiSol1
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus ventral partipsiDRV3
Superior central raphe nucleusipsiCS3
A1 noradrenergic cellsipsiA13
Dorsal medulla oblongataipsiDMe1
Inferior olive medial nucleusipsiIOM2
Inferior olive principal nucleusipsiIOPr2
Dorsal paragigantocellular nucleusipsiDPGi3
Lateral paragigantocellular nucleusipsiLPGi3
Endopiriform systemipsiEnN2
Nucleus of the vertical limb of the diagonal bandipsiVDB-0.5
Basal nucleus MeynertipsiB4
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA0.5
Tuberomammillary nucleusipsiTuM0.5
HypothalamusipsiHYPO0
Posterior region [Lateral division of the hypothalamus]ipsiPReg3
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar1
Lateral hypothalamic area medial part [Preoptic anterior region]ipsiLHAmpar1
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR1
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area anterior partipsiLHAa1
Lateral hypothalamic area medial partipsiLHAm1
Lateral hypothalamic area perifornical partipsiPFx1
Lateral hypothalamic area posterior partipsiLHAp1
Tuberal region of lateral hypothalamusipsiTuLH2
Anterior hypothalamic areaipsiAHA1
Dorsal hypothalamic areaipsiDA3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Posterior hypothalamic areaipsiPHA2
Posterior hypothalamic nucleusipsiPH1
Ventromedial hypothalamic nucleusipsiVMH0.5
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR1
Lateral mammillary nucleusipsiLM2
Medial mammillary nucleus medial partipsiMM2
Premammillary nucleusipsiPMAN0.5
A8 dopamine cells retrorubral group lateral partipsiRRFL2
A8 dopamine cells retrorubral group medial partipsiRRFm3
Anterodorsal thalamic nucleusipsiAD2
Anteromedial thalamic nucleusipsiAM3
Anteromedial thalamic nucleus caudal partipsiAMc-0.5
Anteromedial thalamic nucleus ventromedial partipsiAMVM2
Anteroventral thalamic nucleusipsiAV3
Interoanterodorsal thalamic nucleusipsiIAD1.5
Interoanteromedial thalamic nucleusipsiIAM2
Central medial thalamic nucleusipsiCM3
Centrolateral thalamic nucleusipsiCL3
Paracentral thalamic nucleusipsiPC1
Parafascicular thalamic nucleusipsiPF1
Rhomboid thalamic nucleusipsiRh2
Posterior thalamic nuclear groupipsiPo-0.5
Medial group of the dorsal thalamusipsiMED2
Mediodorsal thalamic nucleusipsiMD3
Intermediodorsal thalamic nucleusipsiIMD2
Mediodorsal thalamic nucleus caudal partipsiMDCa2.5
Mediodorsal thalamic nucleus central partipsiMDC2.5
Mediodorsal thalamic nucleus lateral partipsiMDL3
Mediodorsal thalamic nucleus medial partipsiMDM2.5
Mediodorsal thalamic nucleus ventrolateral partipsiMDVL2
Submedius thalamic nucleusipsiSub2
Midline group of the dorsal thalamusipsiMTN3
Paratenial thalamic nucleusipsiPT3
Paraventricular thalamic nucleusipsiPV3
Paraventricular thalamic nucleus caudal partipsiPVca1.5
Paraventricular thalamic nucleus rostral partipsiPVr1.5
Reuniens thalamic nucleusipsiRe3
Ventral anterior-lateral complex of the thalamusipsiVAL1
Ventro anterior thalamic nucleusipsiVA1
Ventro anterior thalamic nucleus medial partipsiVAm2
Ventrolateral thalamic nucleusipsiVL3
Ventrolateral thalamic nucleus medial partipsiVLme2
Ventral posterolateral thalamic nucleusipsiVPL0
Ventral posteromedial thalamic nucleusipsiVPM0
Ventromedial thalamic nucleusipsiVM1
Intralaminar nucleiipsiILN3
Parafascicular centre-median complexipsiPFCM1
Lateral posterior thalamic nucleusipsiLP1
Lateral posterior thalamic nucleus laterorostral partipsiLPLR2
Lateral posterior thalamic nucleus mediorostral part medial regionipsiLPMRm2
Laterodorsal thalamic nucleusipsiLD3
Medial thalamic zoneipsiMTZ-0.5
Ventral thalamusipsiVNT-0.5
Reticular thalamic nucleusipsiRt3
Ventral medial nucleus of the thalamusipsiVMT-0.5
Zona incertaipsiZI3
Nucleus of the fields of ForelipsiF2
Rostrolateral dorsal zona incertaipsiZIDRL1.5
Zona incerta ventral part medial partipsiZIvm1.5
Lateral habenular nucleusipsiLHb1
Medial habenular nucleusipsiMHb0
Pretectal regionipsiPRT1
Superficial pineal glandipsiSPi2
Medial forebrain bundle at the level of the anterior commissureipsimfbac0
Medial forebrain bundle at the level of the lateral preoptic areraipsimfbLpa0
Medial forebrain bundle at the level of the anterior hypothalamic nucleusipsimfbahn-2
Medial forebrain bundle at the level of the lateral hypothalamusipsimfbLH-2
Medial forebrain bundle at the level of the posterior hypothalamic nucleusipsimfbPH-2
Basolateral amygdaloid nucleusipsiBL2
Posterior basomedial nucleus caudal partipsiBMPc-0.5
Bed nucleus of the stria terminalis anterior divisionipsiBSTA0
Bed nucleus of the stria terminalis dorsolateral partipsiBSTDL0
Bed nucleus of the stria terminalis medial divisionipsiBSTM0
Bed nucleus of the stria terminalis ventral partipsiBNSTv0.5
Central amygdaloid nucleus lateral divisionipsiCeL0.5
Central amygdaloid nucleus medial divisionipsiCeM0.5
Lateral globus pallidusipsiLGP-0.5
Accumbens nucleusipsiAc2
Accumbens nucleus coreipsiAcbC1
Accumbens nucleus core dorsolateral partipsiAcbCdl-0.5
Accumbens nucleus shellipsiAcbSh1
Midrostrocaudal level of the accumbens nucleus shellipsiAcbShmrc0.5
Anterior accumbensipsiAcbA1
Caudate putamenipsiCPu3
Dorsomedial striatumipsiCPudm2
Dorsomedial striatum rostral partipsiCPudmr0.5
Medial striatumipsiCPum2
Caudal striatumipsiCPuc2
Dorsal striatum centrolateral partipsiCPudcL-0.5
Rostroventral striatumipsiCPurv-0.5
Striatal matrix compartmentipsiSMC-0.5
Striatal patch compartmentipsiSPC-0.5
Ventral striatumipsiCPuv-0.5
Ventrolateral striatumipsiCPuvl2
Ventromedial striatumipsiCPuvm2
Ventromedial striatum rostral partipsiCPuvmr3
Lateral striatumipsiCPul0
Fundus of the striatumipsiFS2
Subthalamic nucleusipsiSTh2
Ventromedial part of caudal subthalamic nucleusipsiSThcvm3
Subthalamic nucleus dorsomedial partipsiSThdm3
Subthalamic nucleus middle partipsiSThm1
Ventromedial middle subthalamic nucleusipsiSThvmmi3
HippocampusipsiHIPP-0.5
Ventral hippocampusipsiHIPPv0
PresubiculumipsiPrS2
ParasubiculumipsiPaS-3
PostsubiculumipsiPost2
Entorhinal cortexipsiEnt1
Dorsolateral entorhinal cortexipsiDLEnt-0.5
Lateral entorhinal cortexipsiLEnt1
Retrosplenial regionsipsiRS3
Retrosplenial dorsalipsiRSd2
Retrosplenial ventral aipsiRSv-a2
Retrosplenial cortex middle part layer 1ipsiRSmiL1-0.5
Retrosplenial cortex middle part layer 2ipsiRSmiL2-0.5
Retrosplenial cortex middle part layer 3ipsiRSmiL3-0.5
Retrosplenial cortex middle part layer 4ipsiRSmiL4-0.5
Retrosplenial cortex middle part layer 5ipsiRSmiL5-0.5
Retrosplenial cortex middle part layer 6ipsiRSmiL6-0.5
Midrostrocaudal part of the retrosplenial dysgranular cortexipsiRSdysmrc-0.5
Retrosplenial granular b cortex caudal partipsiRSGbc-0.5
Retrosplenial granular b cortex rostral partipsiRSGbr-0.5
Area 29ipsiA291
Area 30ipsiA301
Anterior cingulate cortexipsiACC1
Cingulate cortex area 1 caudal partipsiCg1c0
Cingulate cortex area 1 layer 3ipsiCg1L33
Cingulate cortex area 2ipsiCg21
Cingulate cortex area 2 caudal partipsiCg2c0
Dorsal anterior cingulate cortexipsiDACC0.5
Dorsal anterior cingulate cortex layer 3ipsiDACCL3-0.5
Dorsal anterior cingulate cortex layer 5ipsiDACCL5-0.5
Dorsal anterior cingulate cortex layer 6ipsiDACCL6-0.5
Middle cingulate cortexipsiMCC-0.5
Posterior cingulate cortexipsiPCC-0.5
Prelimbic cortexipsiPrL1
Prelimbic cortex layer 2ipsiPrLL22
Prelimbic cortex layer 3ipsiPrLL32
Prelimbic cortex layer 5ipsiPrLL52
Prelimbic cortex layer 6ipsiPrLL62
Infralimbic cortexipsiIL1
Frontal cortex area 2ipsiFr20
Parietal cortex posterior area dorsal partipsiParPD2
Parietal association cortex layer 3ipsiParPLa3-0.5
Parietal association cortex layer 4ipsiParPLa4-0.5
Parietal association cortex layer 5ipsiParPLa5-0.5
Parietal association cortex layer 6ipsiParPLa6-0.5
Parietal cortex area 1ipsiPar10.5
Temporal association cortex 1ipsiTeA0
Insular cortexipsiICX0.5
Agranular insular cortex dorsal part superficial layersipsiAIDsL2
Agranular insular cortex rostral partipsiRAIC1
Agranular insular cortex ventral part layer 3ipsiAIVL32
Border region of the agranular and granular insular cortex ventral partipsiAGbGICXv3
Perirhinal cortexipsiA35-0.5
Prefrontal cortexipsiPFC0
Motoric regionsipsiM2
Lateral agranular prefrontal cortexipsiAGl1
Caudal forelimb motor areaipsiCFMA2
Hindlimb motor cortexipsiHMCx0.5
Lateral agranular prefrontal cortex layer 3ipsiAGlL3-0.5
Lateral agranular prefrontal cortex layer 5ipsiAGlL5-0.5
Lateral agranular prefrontal cortex layer 6ipsiAGlL6-0.5
Medial prefrontal cortexipsimPFC2
Medial agranular prefrontal cortexipsiAGm1
Secondary visual cortexipsiV20
Secondary visual cortex medial areaipsiV2M0.5
Anterior medial frontal cortexipsiAMFC-0.5
Ventrolateral orbital area posterior partipsiVLOp-0.5
Precommissural nucleusipsiPrC4
Lateral geniculate complexipsiLG0
Medial geniculate nucleusipsiMG3
Interpeduncular nucleusipsiIP0
Interpeduncular nucleus caudal subnucleusipsiIPC-0.5
Ventral part of the dorsal lateral interpeduncular nucleusipsiIPRvdL-0.5
Interpeduncular nucleus intermediate subnucleusipsiIPI-0.5
Interpeduncular nucleus lateral subnucleusipsiIPL-0.5
Caudoventral part of the rostral lateral interpeduncular nucleusipsiIPcvRL-0.5
Spinal cordipsiMES-0.5
Ventrolateral periaqueductal graycontraVLPAG1
Middle part of the retrorubral fieldcontraRRmi1
Pedunculopontine tegmental nucleus pars compactacontraPPNC3
Nucleus incertus pars dissipatacontraNId1
Paramedian reticular nucleuscontraPMn3
Nucleus reticularis subcuneiformiscontraRScf2
Pontine reticular nucleus oral part medial partcontraPnOm3
Pontine reticular nucleus caudal part alphacontraPnOca1
Pontine reticular nucleus caudal part betacontraPnOcb3
Peribrachial regioncontraPBR3
Cuneiforme nucleuscontraCnF3
Subcoeruleus nucleuscontraSubC2
Perihypoglossal complexcontra12periC1.5
Mesencephalic trigeminal nucleus caudal polecontraMe5cp1
Dorsal raphe nucleuscontraDR2
A1 noradrenergic cellscontraA13
Endopiriform systemcontraEnN2
Basal nucleus MeynertcontraB0.5
Tuberomammillary nucleuscontraTuM0.5
HypothalamuscontraHYPO0
Posterior region [Lateral division of the hypothalamus]contraPReg0.5
Tuberal region of lateral hypothalamuscontraTuLH0.5
A8 dopamine cells retrorubral group lateral partcontraRRFL1
A8 dopamine cells retrorubral group medial partcontraRRFm1.5
Anteromedial thalamic nucleuscontraAM3
Anteromedial thalamic nucleus caudal partcontraAMc-0.5
Anteroventral thalamic nucleuscontraAV3
Central medial thalamic nucleuscontraCM2
Centrolateral thalamic nucleuscontraCL-0.5
Rhomboid thalamic nucleuscontraRh2
Mediodorsal thalamic nucleus caudal partcontraMDCa0.5
Mediodorsal thalamic nucleus central partcontraMDC0.5
Mediodorsal thalamic nucleus lateral partcontraMDL1
Mediodorsal thalamic nucleus medial partcontraMDM0.5
Submedius thalamic nucleuscontraSub1
Reuniens thalamic nucleuscontraRe2
Ventro anterior thalamic nucleus medial partcontraVAm1
Ventrolateral thalamic nucleuscontraVL1
Ventrolateral thalamic nucleus medial partcontraVLme1
Intralaminar nucleicontraILN1
Reticular thalamic nucleuscontraRt3
Zona incertacontraZI0
Nucleus of the fields of ForelcontraF0
Accumbens nucleuscontraAc2
Accumbens nucleus corecontraAcbC1
Anterior accumbenscontraAcbA0.5
Caudate putamencontraCPu-0.5
Dorsomedial striatumcontraCPudm1
Dorsomedial striatum rostral partcontraCPudmr0.5
Medial striatumcontraCPum2
Caudal striatumcontraCPuc2
Ventrolateral striatumcontraCPuvl2
Lateral striatumcontraCPul0
Fundus of the striatumcontraFS2
Retrosplenial regionscontraRS-0.5
Area 29contraA292
Area 30contraA302
Anterior cingulate cortexcontraACC-0.5
Cingulate cortex area 2contraCg22
Dorsal anterior cingulate cortexcontraDACC0.5
Middle cingulate cortexcontraMCC-0.5
Posterior cingulate cortexcontraPCC-0.5
Prelimbic cortexcontraPrL2
Infralimbic cortexcontraIL1
NeocortexcontraNEOCX3
Frontal cortex area 2contraFr21
Parietal cortex area 1contraPar10.5
Agranular insular cortex dorsal part superficial layerscontraAIDsL1
Agranular insular cortex rostral partcontraRAIC1
Agranular insular cortex ventral part layer 3contraAIVL32
Border region of the agranular and granular insular cortex ventral partcontraAGbGICXv3
Perirhinal cortexcontraA352
Lateral agranular prefrontal cortexcontraAGl0.5
Medial prefrontal cortexcontramPFC1
Medial agranular prefrontal cortexcontraAGm2
Anterior medial frontal cortexcontraAMFC1
Ventrolateral orbital area posterior partcontraVLOp1
Neocortex superficial layerscontraNEOCXsL2
Neocortex layer 5contraNEOCXL52
Neocortex layer 6contraNEOCXL62
Cervical segment 5contraCS51
Cervical segment 6contraCS61
Corticospinal tract of the cervical enlargementcontraCSegEcst-2
Thoracal segment 2contraT21
Thoracal segment 3contraT31
Thoracal segment 8contraT81
Thoracal segment 9contraT91
Lumbar segment 2contraL21
Lumbar segment 3contraL31
KidneycontraOrgsKid0.5

Input from

NameSideAbbr.WeightDetails
Paralemniscal nucleusipsiPL3
Parabigeminal nucleusipsiPBG2
Periaqueductal grayipsiPAG2
Periaqueductal gray medial partipsiPAGm1
Ventrolateral periaqueductal grayipsiVLPAG1
Substantia nigra A9ipsiSN3
Substantia nigra compact partipsiSNC1
Substantia nigra compact part medial tieripsiSNCM2
Substantia nigra lateral partipsiSNL-0.5
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 caudal partipsiVTAcp1.5
Ventral tegmental area A10 lateral partipsiVTAL1
Ventral tegmental area A10 medial partipsiVTAM2
Ventral tegmental area rostral partipsiVTAR2.5
Parabrachial pigmented nucleusipsiPBP2
Paranigral nucleusipsiPN2
Caudal linear nucleus of the rapheipsiCLi1
Laterodorsal tegmental nucleusipsiLDTg2
Ventral tegmental nucleus central partipsiVTgC2
Pedunculopontine tegmental nucleusipsiPPTg2
A4 noradrenaline cellsipsiA40.5
Locus coeruleusipsiLC2
Locus coeruleus caudal partipsiLCca0
Locus coeruleus coreipsiLCco1
Locus coeruleus dorsal partipsiLCD3
Locus coeruleus rostral partipsiLCRo0.5
Locus coeruleus ventromedial partipsiVMLC0
Nucleus incertusipsiNI2
Mesencephalic reticular formationipsiMRF-0.5
Parabrachial nucleusipsiPB1
Lateral parabrachial nucleusipsiLPB-0.5
Parabrachial nucleus medialipsiPBnMe-0.5
Gigantocellular reticular nucleus ventral partipsiGiV-0.5
Lateral reticular nucleus rostral partipsiLRtr-0.5
Subcoeruleus nucleusipsiSubC0
Area postremaipsiAP-0.5
Trigeminal nucleusipsi5-0.5
Principal sensory trigeminal nucleusipsiPr5-0.5
Principal sensory trigeminal nucleus caudal partipsiPr5ca-0.5
Spinal trigeminal nucleus interpolar partipsiSp5I-0.5
Spinal trigeminal nucleus oral partipsiSp5O-0.5
Nucleus of the solitary tract commissural partipsiSolC-0.5
Nucleus of the solitary tract ventrolateral partipsiSolVL-0.5
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC2
Dorsal raphe nucleus central partipsiDRcep1.5
Dorsal raphe nucleus dorsal partipsiDRD-0.5
Central part of the dorsomedial zone of the dorsal raphe nucleusipsiDRdmCe2
Dorsal raphe nucleus rostral partipsiDRr2
Linear nucleus of the rapheipsiLIR-0.5
Rostral linear nucleus of the rapheipsiRLi1
Median raphe nucleusipsiMnR1
Caudal ventrolateral medullaipsiCVLM-0.5
Rostral ventrolateral medullaipsiRVLM-0.5
Olivary pretectal nucleusipsiOPT-1
Paragigantocellular reticular nucleusipsiPGi-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Ventral most border of the medullaipsiVmbMeO-0.5
Dorsal endopiriform nucleusipsiDEn-0.5
Diagonal band of BrocaipsiDBB-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the horizontal limb of the diagonal band medial partipsiHDBm3
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Medial septal nucleusipsiMS0
Basal nucleus MeynertipsiB3
Basal nucleus Meynert anterior partipsiBan1.5
Basal nucleus Meynert caudal endipsiBcaE0
Basal nucleus Meynert intermediate divisonipsiBim1
Basal nucleus Meynert posterior divisionipsiBpd1
Central zone of the nucleus basalisipsiBcez0.5
Substantia innominataipsiSI2
Lateral preoptic areaipsiLPO3
Magnocellular preoptic nucleusipsiMCPO1
Dorsal tenia tectaipsiDTT2
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar0
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR0
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp0
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm0
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa0
Lateral hypothalamic area posterior partipsiLHAp-0.5
Lateral hypothalamic area [Lateral zone tuberal level]ipsiLHtu1
Anterior hypothalamic areaipsiAHA-0.5
Anterior hypothalamic nucleusipsiAHn-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Posterior hypothalamic areaipsiPHA2
Posterior hypothalamic nucleus caudal partipsiPHCa1
Posterior hypothalamic nucleus rostral partipsiPHRo2
Ventromedial hypothalamic nucleus anterior partipsiVMHA1
Ventromedial hypothalamic nucleus central partipsiVMHC1
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL-0.5
Arcuate nucleus lateral partipsiArcL-0.5
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR2
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa-0.5
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD-0.5
Lateral mammillary nucleusipsiLM1
Medial mammillary nucleus lateral partipsiML-0.5
Supramammillar nucleusipsiSuM1
A8 dopamine cells retrorubral groupipsiRRF-0.5
Perifornical nucleusipsiPeF-0.5
Perifornical nucleus lateral partipsiPeFL-0.5
Anterior lateral part of the perifornical areaipsiPeFaL-0.5
Retrochiasmatic areaipsiRCh-0.5
ThalamusipsiT-0.5
Anterior group of the dorsal thalamusipsiATN-0.5
Anterodorsal thalamic nucleusipsiAD3
Anteromedial thalamic nucleusipsiAM3
Anteromedial thalamic nucleus ventral partipsiAMV-0.5
Anteroventral thalamic nucleusipsiAV3
Interoanteromedial thalamic nucleusipsiIAM3
Central medial thalamic nucleusipsiCM2
Central medial thalamic nucleus caudal partipsiCMca3
Central medial thalamic nucleus rostral partipsiCMr-0.5
Centrolateral thalamic nucleusipsiCL3
Centrolateral thalamic nucleus dorsal partipsiCLD-0.5
Centrolateral thalamic nucleus lateral partipsiCLL-0.5
Paracentral thalamic nucleusipsiPC3
Paracentral thalamic nucleus caudal partipsiPC-c-0.5
Paracentral thalamic nucleus rostral partipsiPC-r-0.5
Parafascicular thalamic nucleusipsiPF1
Parafascicular thalamic nucleus medial partipsiPFM2
Rhomboid thalamic nucleusipsiRh3
Mediodorsal thalamic nucleusipsiMD3
Intermediodorsal thalamic nucleusipsiIMD2
Mediodorsal thalamic nucleus caudal two thirdsipsiMDCtt-0.5
Mediodorsal thalamic nucleus central partipsiMDC-0.5
Mediodorsal thalamic nucleus dorsal two thirdsipsiMDDtt-0.5
Mediodorsal thalamic nucleus lateral partipsiMDL2
Mediodorsal thalamic nucleus medial partipsiMDM-0.5
Submedius thalamic nucleusipsiSub-0.5
Midline group of the dorsal thalamusipsiMTN-0.5
Paratenial thalamic nucleusipsiPT1
Paraventricular thalamic nucleusipsiPV-0.5
Paraventricular thalamic nucleus caudal partipsiPVca1
Paraventricular thalamic nucleus dorsal partipsiPVdo1
Paraventricular thalamic nucleus rostral partipsiPVr1
Paraventricular thalamic nucleus ventral partipsiPVV1
Reuniens thalamic nucleusipsiRe3
Ventrolateral thalamic nucleusipsiVL-0.5
Ventral posterior thalamic complexipsiVPT-0.5
Ventromedial thalamic nucleusipsiVM2
Intralaminar nucleiipsiILN-0.5
Lateral posterior thalamic nucleusipsiLP-0.5
Caudomedial lateral posterior thalamic nucleusipsiLPcm0.5
Lateral posterior thalamic nucleus lateral partipsiLPTL1
Lateral posterior thalamic nucleus mediorostral partipsiLPMR-0.5
Lateral posterior thalamic nucleus mediorostral part medial regionipsiLPMRm2
Rostromedial lateral posterior thalamic nucleusipsiLPrm1
Lateral posterior thalamic nucleus anterodorsal partipsiLPad-0.5
Lateral posterior thalamic nucleus anteroventral partipsiLPav-0.5
Laterodorsal thalamic nucleusipsiLD3
Laterodorsal thalamic nucleus medial partipsiLDm-0.5
Laterodorsal thalamic nucleus ventral partipsiLDV-0.5
Medial thalamic zoneipsiMTZ-0.5
Ventral thalamusipsiVNT-1
Reticular thalamic nucleusipsiRt-0.5
Ventral medial nucleus of the thalamusipsiVMT-0.5
Zona incerta dorsal partipsiZID-0.5
Xiphoid thalamic nucleusipsiXi-0.5
Lateral habenular nucleusipsiLHb-0.5
Medial habenular nucleusipsiMHb-0.5
Pretectal regionipsiPRT-0.5
Anterior pretectal nucleusipsiAPT-0.5
Medial pretectal nucleusipsiMPT0
Medial terminal nucleus of the accessory optic tractipsiMT2
Basal nucleusipsiBnc1
Basal nucleus rostral partipsiBncR0.5
Basolateral amygdaloid nucleusipsiBL-0.5
Anterior basolateral nucleusipsiBLA3
Anteriorly in the medial portion of the anterior part of the basolateral nucleusipsiBLAMa-0.5
Posteriorly in the anterior basolateral nucleusipsiBLApo-0.5
Ventrodorsally in the anterior portion of the basolateral nucleusipsiBLAvL-0.5
Central part of the ventral portion of the basolateral amygdaloid nucleusipsiBLveC1
Posterior basolateral nucleusipsiBLP3
Posteriorly in the centrolateral portion of the posterior part of the basolateral nucleusipsiBLPCLp-0.5
Anterior portion of the posterior basolateral nucleusipsiBLPa-0.5
Ventral basolateral nucleusipsiBLV3
Basomedial amygdaloid nucleusipsiBM1
Anterior basomedial nucleusipsiBMA2
Lateral amygdaloid nucleusipsiLA3
Anterior part of the lateral nucleusipsiLAa-0.5
Ventromedial part of the lateral nucleusipsiLaVM-0.5
Middle portion of the lateral amygdaloid nucleusipsiLAmi-0.5
Dorsomedial part of the lateral amygdaloid nucleusipsiLAdm-0.5
Bed nucleus of the stria terminalisipsiBST1
Central amygdaloid nucleusipsiCe2
Central amygdaloid nucleus lateral divisionipsiCeL-0.5
Amygdalostriatal transition area rostrocaudal partipsiAStrrc-0.5
ClaustrumipsiCl3
Anteroposterior part of the claustrumipsiClAP-0.5
Dorsoventral claustrumipsiCldv-0.5
Accumbens nucleusipsiAc3
Accumbens nucleus shellipsiAcbSh0
HippocampusipsiHIPP-0.5
Dentate gyrusipsiDG-3
Field CA1 of hippocampusipsiCA12
Field CA1 of hippocampus rostral partipsiCA1r1
Field CA1 of hippocampus temporal third layer 3ipsiCA1ttL3-0.5
Field CA1 of hippocampus temporal third layer 4ipsiCA1ttL41
Field CA1 of hippocampus temporal poleipsiCA1tp-0.5
Field CA1 of hippocampus splenial one-third stratum oriensipsiCA1otLo1
Field CA1 of hippocampus splenial one-third stratum pyramidaleipsiCA1otLspy-0.5
Field CA1 of hippocampus septal thirdipsiCA1st-0.5
Field CA3 of hippocampusipsiCA3-3
SubiculumipsiS1
Subiculum dorsal partipsiSd-1
Indusium griseumipsiIG-0.5
ParasubiculumipsiPaS-3
PostsubiculumipsiPost-3
Entorhinal cortexipsiEnt2
Piriform cortexipsiPir-0.5
Retrosplenial regionsipsiRS3
Retrosplenial dorsalipsiRSd3
Retrosplenial ventral partipsiRSPv2
Retrosplenial ventral aipsiRSv-a2
Retrosplenial cortexipsiRSCx-0.5
Retrosplenial agranular cortexipsiRSA1
Retrosplenial dysgranular cortex layer 5ipsiRSdysL5-0.5
Midrostrocaudal part of the retrosplenial dysgranular cortexipsiRSdysmrc2
Retrosplenial granular cortex a regionipsiRSGa-0.5
Retrosplenial granular a cortex layer 5ipsiRSGa5-0.5
Retrosplenial granular a cortex layer 6ipsiRSGa6-0.5
Retrosplenial granular a cortex middle part layer 2ipsiRSGaMiL2-0.5
Retrosplenial granular a cortex middle part layer 3ipsiRSGaMiL3-0.5
Retrosplenial granular a cortex middle part layer 4ipsiRSGaMiL4-0.5
Retrosplenial granular a cortex middle part layer 5ipsiRSGaMiL5-0.5
Retrosplenial granular a cortex middle part layer 6ipsiRSGaMiL6-0.5
Retrosplenial granular b cortex layer 5ipsiRSGb5-0.5
Retrosplenial granular b cortex layer 6ipsiRSGb6-0.5
Retrosplenial granular cortex b region rostrocaudal middle layersipsiRSGbrcmL3
Cingulate cortexipsiCg2
Anterior cingulate cortexipsiACC1
Middle cingulate cortexipsiMCC-0.5
Posterior cingulate cortexipsiPCC-0.5
Prelimbic cortexipsiPrL3
Infralimbic cortexipsiIL2
Parietal cortex posterior areaipsiParP1
Parietal cortex posterior area dorsal partipsiParPD2
Temporal cortexipsiTE1
Auditory regionsipsiAU1
Frontal polar cortex medial partipsiFPm1
Insular cortexipsiICX2
Agranular insular cortex rostral partipsiRAIC3
Agranular insular cortex posterior partipsiAIP1
Caudalmost area of the dysgranular insular cortexipsiDIvCM1
Rostrocaudal middle level of the dysgranular insular cortexipsiDIrcm1
Granular insular cortexipsiGI1
Caudalmost area of the granular insular cortexipsiGICm1
Lateral granular insular cortexipsiLGI-0.5
Rostrocaudal middle level of the granular insular cortexipsiGIrcm1
Perirhinal cortexipsiA352
Ectorhinal cortexipsiA361
Dorsal peduncular cortexipsiDP2
Prefrontal cortexipsiPFC-0.5
Motoric regionsipsiM-0.5
Lateral agranular prefrontal cortexipsiAGl1
Caudal forelimb motor areaipsiCFMA2
Medial prefrontal cortexipsimPFC0
Medial agranular prefrontal cortexipsiAGm1
Secondary somatosensory cortexipsiS21
Primary visual cortexipsiV1-0.5
Secondary visual cortexipsiV22
Lateral orbital cortexipsiLO-0.5
Medial orbital cortexipsiMO2
Ventral orbital cortexipsiVO2
Nucleus of the posterior commissureipsiPCom2
Lateral geniculate complexipsiLG-0.5
Interpeduncular nucleusipsiIP1
Accessory olfactory bulbipsiAOB-0.5
Accessory olfactory bulb anterior partipsiAOBa-0.5
Olfactory tubercleipsiTuO-1
Periaqueductal graycontraPAG1
Substantia nigra compact partcontraSNC1
Ventral tegmental area A10contraVTA2
Caudal linear nucleus of the raphecontraCLi1
Laterodorsal tegmental nucleuscontraLDTg1
Locus coeruleuscontraLC1
Nucleus incertuscontraNI1
Parabrachial nucleuscontraPB1
Lateral parabrachial nucleuscontraLPB-0.5
Parabrachial nucleus medialcontraPBnMe-0.5
Trigeminal nucleuscontra5-0.5
Principal sensory trigeminal nucleuscontraPr5-0.5
Principal sensory trigeminal nucleus caudal partcontraPr5ca-0.5
Nucleus of the solitary tract commissural partcontraSolC-0.5
Nucleus of the solitary tract ventrolateral partcontraSolVL-0.5
Dorsal raphe nucleuscontraDR2
Median raphe nucleuscontraMnR1
Caudal ventrolateral medullacontraCVLM-0.5
Rostral ventrolateral medullacontraRVLM-0.5
Ventral most border of the medullacontraVmbMeO-0.5
Nucleus of the horizontal limb of the diagonal bandcontraHDB3
Nucleus of the horizontal limb of the diagonal band medial partcontraHDBm1
Nucleus of the vertical limb of the diagonal bandcontraVDB2
Substantia innominatacontraSI1
Lateral preoptic areacontraLPO1
Magnocellular preoptic nucleuscontraMCPO1
Dorsal tenia tectacontraDTT1
Lateral hypothalamic areacontraLH1
Posterior hypothalamic areacontraPHA1
Ventromedial hypothalamic nucleus anterior partcontraVMHA0.5
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM0.5
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL-0.5
Lateral mammillary nucleuscontraLM1
Supramammillar nucleuscontraSuM1
Anterior lateral part of the perifornical areacontraPeFaL-0.5
Anteromedial thalamic nucleuscontraAM2
Interoanteromedial thalamic nucleuscontraIAM2
Central medial thalamic nucleuscontraCM1
Centrolateral thalamic nucleuscontraCL2
Paracentral thalamic nucleuscontraPC2
Parafascicular thalamic nucleuscontraPF-0.5
Rhomboid thalamic nucleuscontraRh2
Mediodorsal thalamic nucleuscontraMD2
Intermediodorsal thalamic nucleuscontraIMD1
Paratenial thalamic nucleuscontraPT1
Paraventricular thalamic nucleuscontraPV1
Reuniens thalamic nucleuscontraRe2
Ventromedial thalamic nucleuscontraVM1
Ventral medial nucleus of the thalamuscontraVMT1
Xiphoid thalamic nucleuscontraXi1
Basolateral amygdaloid nucleuscontraBL-0.5
Anterior basolateral nucleuscontraBLA2
Posterior basolateral nucleuscontraBLP2
Ventral basolateral nucleuscontraBLV2
Basomedial amygdaloid nucleuscontraBM0.5
Anterior basomedial nucleuscontraBMA1
Lateral amygdaloid nucleuscontraLA2
Bed nucleus of the stria terminaliscontraBST1
Central amygdaloid nucleuscontraCe-0.5
ClaustrumcontraCl2
Accumbens nucleuscontraAc2
Field CA1 of hippocampuscontraCA11
Field CA1 of hippocampus temporal polecontraCA1tp0
Entorhinal cortexcontraEnt1
Piriform cortexcontraPir-0.5
Retrosplenial regionscontraRS1
Midrostrocaudal part of the retrosplenial dysgranular cortexcontraRSdysmrc-0.5
Cingulate cortexcontraCg-0.5
Anterior cingulate cortexcontraACC-0.5
Anterior cingulate cortex layer 2contraACCL23
Anterior cingulate cortex layer 3contraACCL33
Anterior cingulate cortex layer 5contraACCL52
Anterior cingulate cortex layer 6contraACCL62
Middle cingulate cortexcontraMCC-0.5
Posterior cingulate cortexcontraPCC-0.5
Prelimbic cortexcontraPrL2
Infralimbic cortexcontraIL2
Parietal cortex posterior areacontraParP1
Temporal cortexcontraTE1
Auditory regionscontraAU1
Frontal polar cortex medial partcontraFPm1
Agranular insular cortex posterior partcontraAIP1
Agranular insular cortex rostral partcontraRAIC-0.5
Granular insular cortexcontraGI1
Perirhinal cortexcontraA351
Ectorhinal cortexcontraA361
Lateral agranular prefrontal cortexcontraAGl1
Medial prefrontal cortexcontramPFC0
Medial agranular prefrontal cortexcontraAGm1
Secondary somatosensory cortexcontraS21
Secondary visual cortexcontraV21
Lateral orbital cortexcontraLO-0.5
Medial orbital cortexcontraMO1
Ventral orbital cortexcontraVO1
Interpeduncular nucleuscontraIP1
Accessory olfactory bulbcontraAOB-0.5
Accessory olfactory bulb anterior partcontraAOBa-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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