University of Rostock

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Rat connectome



Intermediodorsal thalamic nucleus left


Abbreviation
IMD
Color       
Superior regionsMediodorsal thalamic nucleus

SynonymsAbbr.Language
Interomedial nucleus of the thalamus  
Intermediodorsal nucleus thalamusLIMDEng
Intermediodorsal thalamic nucleusIMDEng
Intermediodorsal nucleus  

SubregionsSide
Intermediodorsal thalamic nucleus caudal partleft

Output to

NameSideAbbr.WeightDetails
Paralemniscal nucleusipsiPL2
Substantia innominataipsiSI3
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0.5
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0.5
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Paraventricular hypothalamic nucleusipsiPa0
Central medial thalamic nucleusipsiCM0
Midline in the central medial thalamic nucleusipsiCMmi0
Mediodorsal thalamic nucleusipsiMD1
Intermediodorsal thalamic nucleusipsiIMD0
Paraventricular thalamic nucleusipsiPV1
Reticular thalamic nucleusipsiRt1
Basolateral amygdaloid nucleusipsiBL2
Anterior basolateral nucleusipsiBLA1
Anterior basomedial nucleusipsiBMA1
Posterior basomedial nucleusipsiBMP-0.5
Lateral amygdaloid nucleusipsiLA1.5
Bed nucleus of the stria terminalis lateral divisionipsiBSTL1
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV-0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM1
Central amygdaloid nucleusipsiCe1.5
Central partipsiCeLc3
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM2
Amygdalopiriform transition areaipsiAPir1
Anterior part of the claustrumipsiACl1
Globus pallidusipsiGP3
Ventral pallidumipsiVP2
StriatumipsiSTR0.5
Accumbens nucleusipsiAc1
Accumbens nucleus coreipsiAcbC3
Accumbens nucleus core ventrolateral partipsiAcbCvL-0.5
Lateral coreipsiAcbCl2
Calretinin-like immunoreactive neuron patches of accumbens coreipsiAcbCi-2
Accumbens nucleus shellipsiAcbSh1
Dorsomedial shellipsiAcbShdm-10
Lateral accumbens shellipsiAcbShl3
Ventrolateral shellipsiAcbShvl0.5
Accumbens nucleus ventral regionsipsiAcV1
Lateral nucleus accumbensipsiAcl3
Medial accumbensipsiAcbM3
Ventrolateral accumbensipsiAcbVL-0.5
Border between shell and core of the accumbens nucleusipsiAcbsc1
Caudate putamenipsiCPu3
Striatal matrix compartmentipsiSMC-0.5
Striatal patch compartmentipsiSPC-0.5
Ventral striatumipsiCPuv2
Ventrolateral striatumipsiCPuvl2
Ventromedial striatumipsiCPuvm2
Fundus of the striatumipsiFS-0.5
Striatal cell bridgesipsiStrCB1
SubiculumipsiS1
Subiculum ventral partipsiSv1
Ventral hippocampusipsiHIPPv1
Lateral entorhinal cortexipsiLEnt3
Lateral entorhinal cortex deep layersipsiLEntDL2
Lateral entorhinal cortex layer 5ipsiLEntL52
Lateral entorhinal cortex ventral partipsiVLEA1
Lateral entorhinal cortex ventromedial partipsiVMEAL1
Medial entorhinal cortexipsiMEnt0
Cingulate cortexipsiCg3
Anterior cingulate cortexipsiACC2
Cingulate cortex area 1ipsiCg1-0.5
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2ipsiCg2-0.5
Cingulate cortex area 2 caudal partipsiCg2c1
Cingulate cortex area 3ipsiCg31
Prelimbic cortexipsiPrL2
Prelimbic cortex layer 1ipsiPrLL12
Prelimbic cortex layer 3ipsiPrLL32
Prelimbic cortex layer 4ipsiPrLL42
Prelimbic cortex layer 5ipsiPrLL52
Infralimbic cortexipsiIL3
Infralimbic cortex dorsal partipsiILD0.5
Infralimbic cortex layer 1ipsiILL12
Infralimbic cortex layer 5ipsiILL52
Infralimbic cortex layer 3ipsiILL32
Infralimbic cortex rostral partipsiILR1.5
Insular cortexipsiICX3
Agranular insular cortexipsiAI2
Agranular insular cortex dorsal partipsiAID3
Agranular insular cortex dorsal part superficial layersipsiAIDsL-0.5
Agranular insular cortex dorsal part ventral subdivisionipsiAIDv2
Dysgranular insular cortexipsiDI2
Granular insular cortexipsiGI2
Perirhinal cortexipsiA351
Perirhinal cortex ventral portion layer 1ipsiPRHvL11
Perirhinal cortex ventral portion layer 5ipsiPRhvL51
Prefrontal cortexipsiPFC1
Prefrontal cortex dorsomedial partipsiPFCdm1
Lateral prefrontal cortexipsilPFC3
Medial prefrontal cortexipsimPFC2
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS10
Lateral orbital cortexipsiLO2
Medial orbital cortexipsiMO1
Ventral orbital cortexipsiVO1
Olfactory tubercleipsiTuO2
Ventrolateral striatumcontraCPuvl1
Anterior cingulate cortexcontraACC1
Cingulate cortex area 1contraCg1-0.5
Cingulate cortex area 2contraCg2-0.5
Prelimbic cortexcontraPrL1
Infralimbic cortexcontraIL1
Frontal cortex area 1contraFr12
Frontal cortex area 2 anterior partcontraFr2a2
Insular cortexcontraICX1
Dysgranular insular cortexcontraDI-0.5
Medial prefrontal cortexcontramPFC2
Medial agranular prefrontal cortexcontraAGm1
Medial orbital cortexcontraMO2
Ventral orbital cortexcontraVO2
Ventrolateral orbital areacontraVLO2

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG3
Paralemniscal nucleusipsiPL2
Nucleus of DarkschewitschipsiDk0
Aqueductal part of periaqueductal grayipsiAPAG1
Dorsolateral periaqueductal grayipsiDLPAG1.5
Dorsolateral periaqueductal gray rostral partipsiPAGdlr1
Dorsomedial periaqueductal grayipsiDMPAG1.5
Lateral periaqueductal grayipsiLPAG2
Periaqueductal gray rostrolateral partipsiPAGRL2
Periaqueductal gray rostrocaudal extentipsiPAGroe1
Ventrolateral periaqueductal grayipsiVLPAG2
Ventrolateral periaqueductal gray rostral partipsiPAGvlr2
Periventricular gray matteripsiPVG-0.5
Central tegmental fieldipsiTGAC1
Subpeduncular tegmental nucleusipsiSPTg0
Substantia nigra A9ipsiSN2
Substantia nigra compact partipsiSNC1
Substantia nigra reticular partipsiSNR0
Ventral tegmental area A10ipsiVTA1
Parabrachial pigmented nucleusipsiPBP2
Caudal linear nucleus of the rapheipsiCLi1
Laterodorsal tegmental nucleusipsiLDTg3
Dorsal tegmental nucleusipsiDTg1
Pedunculopontine tegmental nucleusipsiPPTg1
Edinger Westphal nucleusipsiEW2
Interstitial nucleus of CajalipsiInC0
A5 noradrenaline cellsipsiA50
Barringtons nucleusipsiBar0
Locus coeruleusipsiLC2
Prelocus coeruleus nucleusipsiPLC4
Nucleus incertusipsiNI0
Dorsomedial tegmental areaipsiDMTg0
Prepositus nucleusipsiPr0
Intermediate reticular nucleusipsiIRt0
Mesencephalic reticular formationipsiMRF3
Deep mesencephalic nucleusipsiDpMe3
Pontine reticular nucleus oral partipsiPnO0
Pontine reticular nucleus ventral partipsiPnV0
Pontine reticular nucleus caudal partipsiPNC1
Cuneiforme nucleusipsiCnF2
Parabrachial nucleusipsiPB2
Parabrachial nucleus medialipsiPBnMe4
Parabrachial nucleus waist partipsiPBW4
Gigantocellular reticular nucleusipsiGi0
Gigantocellular reticular nucleus alpha partipsiGiA0
Medullary reticular nucleusipsiMdD0
Subnucleus reticularis dorsalisipsiSRD0
Medullary reticular nucleus ventrolateral partipsiMdVL-0.5
Medullary reticular nucleus ventral partipsiMdV0
Parvicellular reticular nucleusipsiPCRt0
Subcoeruleus nucleusipsiSubC0
Subcoeruleus nucleus dorsal partipsiSubCD2
Medulla oblongataipsiMeOb-0.5
Facial nucleus caudal partipsi7c-0.5
Mesencephalic trigeminal nucleusipsiMe54
Principal sensory trigeminal nucleusipsiPr50
Spinal trigeminal nucleus caudal partipsiSp5C0
Spinal trigeminal nucleus interpolar partipsiSp5I0
Spinal trigeminal nucleus oral partipsiSp5O0
Vestibular nucleiipsiVnc0
Nucleus of the solitary tractipsiSol-0.5
Caudal nucleus of the solitary tract medial partipsiSolcame1
Nucleus of the solitary tract dorsal partipsiSolD-0.5
Dorsal raphe nucleus caudal partipsiDRC1
Dorsal raphe nucleus dorsal partipsiDRD2
Dorsal raphe nucleus rostral partipsiDRr3
Dorsal raphe nucleus ventral partipsiDRV2
Dorsal raphe nucleus ventrolateral partipsiDRVL3
Rostral linear nucleus of the rapheipsiRLi1
Median raphe nucleusipsiMnR1
Paramedian raphe nucleusipsiPMnR0
Raphe interpositus nucleusipsiRIP1
Raphe magnus nucleusipsiRMg0
Raphe obscurus nucleusipsiROb0
Raphe pallidus nucleusipsiRPa0
Rostral ventrolateral medullaipsiRVLM0
Cuneate nucleusipsiCu0
Gracile nucleus principal partipsiGr0
Medulla oblongata rostral partipsiMeObR-0.5
Obexipsiobex-0.5
Dorsal paragigantocellular nucleusipsiDPGi0
Lateral paragigantocellular nucleusipsiLPGi0
Substantia innominataipsiSI-0.5
Lateral preoptic areaipsiLPO-0.5
Medial preoptic nucleusipsiMPO-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar0
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR0
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp1
Lateral hypothalamic areaipsiLH4
Dorsolateral hypothalamusipsiDLH-0.5
Lateral hypothalamic area juxtadorsomedial regionipsiJDM2
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm0
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0.5
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa0.5
Lateral hypothalamic area perifornical partipsiPFx4
Lateral hypothalamic area ventral partipsiLHAvp-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM4
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM4
Posterior hypothalamic areaipsiPHA4
Posterior hypothalamic nucleus caudal partipsiPHCa3
Posterior hypothalamic nucleus rostral partipsiPHRo3
Ventromedial hypothalamic nucleus central partipsiVMHC-0.5
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1
Arcuate nucleusipsiArc3
Suprachiasmatic nucleusipsiSCh3
Incerto hypothalamic areaipsiicHYPO-0.5
Supramammillar nucleus lateral part lateral subpartipsiSuMLL2
Supramammillar nucleus lateral part medial subpartipsiSuMLM3
Supramammillar nucleus medial partipsiSuMM2
A8 dopamine cells retrorubral groupipsiRRF0
Dorsal thalamusipsiDOR1
Central medial thalamic nucleusipsiCM0
Rhomboid thalamic nucleusipsiRh1
Mediodorsal thalamic nucleusipsiMD0
Intermediodorsal thalamic nucleusipsiIMD0
Midline group of the dorsal thalamusipsiMTN-0.5
Paratenial thalamic nucleusipsiPT-0.5
Paraventricular thalamic nucleus anterior partipsiPVA-0.5
Paraventricular thalamic nucleus caudal partipsiPVca1
Paraventricular thalamic nucleus dorsal partipsiPVdo1
Paraventricular thalamic nucleus posterior partipsiPVP-0.5
Paraventricular thalamic nucleus rostral partipsiPVr1
Paraventricular thalamic nucleus ventral partipsiPVV1
Reuniens thalamic nucleusipsiRe1
Reticular thalamic nucleus medial partipsiRtm-0.5
Zona incertaipsiZI-0.5
HabenulaipsiHAB0
Lateral habenular nucleusipsiLHb2
Amygdaloid complexipsiAC2
Anterior basolateral nucleusipsiBLA-0.5
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm2
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM2
Bed nucleus of the stria terminalis magnocellular nucleusipsiBSTmc1
Bed nucleus of the stria terminalis lateral division dorsal partipsiBSTLD-0.5
Central amygdaloid nucleusipsiCe2
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM-0.5
Anterior amygdaloid areaipsiAA-0.5
Anterior part of the claustrumipsiACl2
Accumbens nucleus coreipsiAcbC-0.5
Parasubthalamic nucleusipsiPSTh2
Anterior cingulate cortexipsiACC2
Prelimbic cortexipsiPrL3
Infralimbic areaipsiiLA2
Infralimbic cortexipsiIL3
Infralimbic cortex rostral partipsiILR1.5
Prefrontal cortexipsiPFC-0.5
Medial agranular prefrontal cortexipsiAGm1.5
Ventral medial prefrontal cortexipsivmPFC-0.5
Medial orbital cortexipsiMO1
Ventral orbital cortexipsiVO0
Intergeniculate leafipsiIGL-0.5
Ventral lateral geniculate nucleusipsiVLG-0.5
Interpeduncular nucleusipsiIP3
Central graycontraCG1
Mesencephalic reticular formationcontraMRF1
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL0.5
Central amygdaloid nucleuscontraCe-1
Parasubthalamic nucleuscontraPSTh2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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