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Rat connectome



Primary somatosensory cortex layer 3 left


Abbreviation
S1L3
Color       
Superior regionsPrimary somatosensory cortex supragranular layers

SynonymsAbbr.Language
Primary somatosensory cortex layer 3S1L3 
Perigranular part of primary somatosensory cortex Eng

SubregionsSide
Primary somatosensory cortex layer 3 pyramidal neuronsleft
Primary somatosensory cortex layer 3 interneuronsleft

Output to

NameSideAbbr.WeightDetails
Ventrobasal complexipsiVB1
Medial striatumipsiCPum1
Striatal matrix compartmentipsiSMC2
Striatal patch compartmentipsiSPC0
Lateral striatumipsiCPul1
Frontal association cortexipsiFrA2
Frontal cortex area 2ipsiFr2-0.5
Frontal cortex area 3ipsiFr32
Parietal cortex posterior areaipsiParP2
Lateral agranular prefrontal cortexipsiAGl2
Forelimb motor cortexipsiFMCx3
Lateral agranular prefrontal cortex layer 3ipsiAGlL32
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Primary somatosensory cortex layer 5ipsiS1L5-0.5
Primary somatosensory cortex layer 1ipsiS1L1-0.5
Primary somatosensory cortex layer 2ipsiS1L2-0.5
Primary somatosensory cortex hindlimb region lateral partipsiS1HLL3
Primary somatosensory cortex hindlimb region middle partipsiS1HLMi0.5
Secondary somatosensory cortexipsiS2-0.5
Secondary somatosensory cortex layer 3ipsiS2L33
Secondary somatosensory cortex layer 4ipsiS2L43
Caudate putamencontraCPu1
Medial striatumcontraCPum1
Central striatumcontraCPuce1
Dorsal striatumcontraCPud1
Dorsolateral striatumcontraCPudl1
Lateral striatumcontraCPul1
Frontal association cortexcontraFrA2
Frontal cortex area 3contraFr32
Lateral parietal association cortexcontraLPtA1.5
Lateral agranular prefrontal cortexcontraAGl-0.5
Primary somatosensory cortexcontraS13
Primary somatosensory cortex layer 5contraS1L5-0.5
Primary somatosensory cortex layer 3contraS1L32
Primary somatosensory cortex forelimb region layer 5bcontraS1FL5b2
Primary somatosensory cortex forelimb region forepawcontraS1FP3
Primary somatosensory cortex forelimb region forepaw layer 5acontraS1FPL5a2
Primary somatosensory cortex forelimb region forepaw layer 5bcontraS1FPL5b2
Primary somatosensory cortex forelimb wrist region layer 5bcontraS1FLWL5b3
Primary somatosensory cortex hindlimb region lateral partcontraS1HLL1
Primary somatosensory cortex hindlimb region middle partcontraS1HLMi0
Primary somatosensory cortex periangular zone arround barrel fieldscontraS1pg3
Secondary somatosensory cortexcontraS23
Spinal cordcontraMES3

Input from

NameSideAbbr.WeightDetails
Central medial thalamic nucleus caudal partipsiCMca2
Parafascicular thalamic nucleusipsiPF1
Ventral part of the posteromedial thalamic nucleusipsiPoMeV-0.5
Ventrobasal complexipsiVB1
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Ventral posterolateral thalamic nucleus parvicellular partipsiVPLpc-0.5
Frontal association cortexipsiFrA1
Frontal cortex area 2ipsiFr22
Frontal cortex area 3ipsiFr31
Border of frontal cortex 2ipsiFr2B1.5
Primary somatosensory cortex barrel field layer 4ipsiS1BF42
Primary somatosensory cortex dysgranular regionipsiS1DZ2
Primary somatosensory cortex layer 5ipsiS1L5-0.5
Primary somatosensory cortex layer 4ipsiS1L42
Primary somatosensory cortex layer 2 pyramidal neuronsipsiS1L2py-0.5
Primary somatosensory cortex layer 3 pyramidal neuronsipsiS1L3py-0.5
Primary somatosensory cortex forelimb regionipsiS1FL2
Primary somatosensory cortex hindlimb region lateral partipsiS1HLL2
Primary somatosensory cortex hindlimb region medial partipsiS1HLMe1
Secondary somatosensory cortexipsiS20.5
Anterolateral area of subdivision 18a in lateral extrastriate cortexipsiALV2L-0.5
Lateromedial area of subdivision 18a in lateral extrastriate cortexipsiLMV2L-0.5
Anterior portion of the anterolateral part of the lateral extrastriate cortexipsiVISLaLA3
Frontal association cortexcontraFrA1
Frontal cortex area 2contraFr21.5
Frontal cortex area 3contraFr31
Border of frontal cortex 2contraFr2B3
Lateral parietal association cortexcontraLPtA1.5
Primary somatosensory cortexcontraS13
Primary somatosensory cortex layer 3contraS1L32
Primary somatosensory cortex hindlimb region lateral partcontraS1HLL0.5
Primary somatosensory cortex hindlimb region medial partcontraS1HLMe0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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