University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Rhomboid thalamic nucleus left


Abbreviation
Rh
Color       
Superior regionsIntralaminar nuclei of the dorsal thalamus

SynonymsAbbr.Language
 RH 
Nucleus commissuralis rhomboidalis Lat
Nucleus rhomboideus  
Rhomboid nucleusRHEng
Rhomboid nucleusRhNEng
Rhomboid thalamic nucleusRhEng
Thalamic rhomboid nucleus Eng
Rhomboid nucleusrhEng
Rhomboid nucleus of thalamusRHEng
Rhomboid thalamic nucleus Eng

SubregionsSide
Rhomboid thalamic nucleus anterior partleft
Rhomboid thalamic nucleus posterior partleft
Rhomboid thalamic nucleus ventral partleft
Rhomboid thalamic nucleus rostral arealeft
Rostral part of the rhomboid nucleusleft

Output to

NameSideAbbr.WeightDetails
Central gray mesencephalic partipsiCGM-3
Pedunculopontine tegmental nucleusipsiPPTg1.5
Pedunculopontine tegmental nucleus pars compactaipsiPPNC1
Locus coeruleusipsiLC2
Parabrachial nucleusipsiPB1
Endopiriform systemipsiEnN2
Ventral endopiriform nucleusipsiVEn1
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Nucleus of the vertical limb of the diagonal bandipsiVDB2
Medial septal nucleusipsiMS1
Basal nucleus Meynert medial partipsiBmp2
Substantia innominataipsiSI2
Substantia innominata dorsal partipsiSID-0.5
Substantia innominata ventral partipsiSIV1
Substantia innominata caudoventral partipsiSICV-0.5
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA1
Magnocellular preoptic nucleusipsiMCPO1
Median preoptic nucleusipsiMnPO1
Tenia tectaipsiTT2
Dorsal tenia tectaipsiDTT3
Ventral tenia tectaipsiVTT1
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Anterior hypothalamic areaipsiAHA1.5
Posterior hypothalamic areaipsiPHA1
Paraventricular hypothalamic nucleusipsiPa-0.5
Supramammillar nucleusipsiSuM1
Anteromedial thalamic nucleusipsiAM1.5
Anteroventral thalamic nucleusipsiAV1
Interoanteromedial thalamic nucleusipsiIAM1
Central medial thalamic nucleusipsiCM1
Midline in the central medial thalamic nucleusipsiCMmi-0.5
Gelatinosus thalamic nucleusipsiG1.5
Rhomboid thalamic nucleusipsiRh1
Mediodorsal thalamic nucleusipsiMD-0.5
Intermediodorsal thalamic nucleusipsiIMD1
Mediodorsal thalamic nucleus central partipsiMDC1
Mediodorsal thalamic nucleus medial partipsiMDM1
Submedius thalamic nucleusipsiSub2
Paratenial thalamic nucleusipsiPT-0.5
Paraventricular thalamic nucleus anterior partipsiPVA1
Paraventricular thalamic nucleus posterior partipsiPVP1
Reuniens thalamic nucleusipsiRe1
Ventral posterior thalamic complexipsiVPT1.5
Ventromedial thalamic nucleusipsiVM1.5
Reticular thalamic nucleusipsiRt1
Reticular thalamic nucleus intermediate partipsiRti1
Reticular thalamic nucleus medial partipsiRtm2
Zona incertaipsiZI1
Lateral habenular nucleusipsiLHb1
Pineal glandipsiPi1
Amygdaloid complexipsiAC1
Basal nucleusipsiBnc1
Basal nucleus anterior subdivisionipsiBncA3
Basolateral amygdaloid nucleusipsiBL3
Ventral basolateral nucleusipsiBLV-0.5
Basomedial amygdaloid nucleusipsiBM2
Lateral amygdaloid nucleusipsiLA1
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis medial divisionipsiBSTM-0.5
Central amygdaloid nucleus lateral division capsular partipsiCeC1
Central amygdaloid nucleus medial divisionipsiCeM1
Anterior amygdaloid areaipsiAA1
Cortical amygdaloid nucleusipsiCAn1
Anterior cortical amygdaloid nucleusipsiACo1
Periamygdaloid complexipsiPAC1
Medial amygdaloid nucleusipsiMe1.5
ClaustrumipsiCl3
Anterior part of the claustrumipsiACl1
Lateral globus pallidusipsiLGP-0.5
Peripallidal regionipsiPePa2
Subpallidal regionipsiSuPa1
StriatumipsiSTR-0.5
Accumbens nucleusipsiAc2
Accumbens nucleus anterolateral partipsiAcAL2
Accumbens nucleus anteromedial partipsiAcAM1
Accumbens nucleus coreipsiAcbC3
Lateral coreipsiAcbCl2
Accumbens nucleus posterolateral partipsiAcbpl1
Accumbens nucleus rostrolateral partipsiAcRL2
Accumbens nucleus rostromedial partipsiAcRM1
Accumbens nucleus shellipsiAcbSh3
Accumbens nucleus caudomedial shellipsiAcbShcm-0.5
Lateral accumbens shellipsiAcbShl2
Ventrolateral shellipsiAcbShvl1
Lateral nucleus accumbensipsiAcl1
Medial accumbensipsiAcbM1
Posteromedial accumbensipsiAcbPM0
Border between shell and core of the accumbens nucleusipsiAcbsc1
Caudate putamenipsiCPu3
Medial striatumipsiCPum-0.5
Central striatumipsiCPuce-0.5
Rostral striatumipsiCPur-0.5
Rostrolateral striatumipsiCPurl2
Striatal matrix compartmentipsiSMC-0.5
Striatal patch compartmentipsiSPC-0.5
Ventral striatumipsiCPuv1
Ventrolateral striatumipsiCPuvl2
Ventromedial striatumipsiCPuvm2
Lateral striatal cell bridgesipsiStrLCB1
HippocampusipsiHIPP1
Dorsal hippocampusipsiHIPPd1
Field CA1 of hippocampusipsiCA13
Field CA1 of hippocampus dorsalipsiCA1d2
SubiculumipsiS3
Ventral hippocampusipsiHIPPv1
Presubiculum layer 1ipsiPrSL1-0.5
Presubiculum deep layersipsiPrSDL-0.5
ParasubiculumipsiPaS-3
Entorhinal cortexipsiEnt3
Lateral entorhinal cortexipsiLEnt2
Lateral entorhinal cortex layer 5ipsiLEntL52
Piriform cortexipsiPir1
Anterior piriform cortexipsiAPIRC2
Posterior piriform cortexipsiPPIRC1
Prepiriform cortexipsiPRPIR1
Retrosplenial regionsipsiRS3
Retrosplenial dorsalipsiRSd2
Retrosplenial ventral partipsiRSPv2
Retrosplenial agranular cortexipsiRSA-0.5
Retrosplenial agranular cortex layer 1ipsiRSAL13
Retrosplenial agranular cortex layer 3ipsiRSAL33
Retrosplenial dysgranular cortexipsiRSdys2
Cingulate cortexipsiCg3
Anterior cingulate cortexipsiACC3
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2 caudal partipsiCg2c1
Cingulate cortex area 3ipsiCg32
Dorsal anterior cingulate cortex layer 3ipsiDACCL33
Dorsal anterior cingulate cortex layer 5ipsiDACCL53
Dorsal anterior cingulate cortex layer 6ipsiDACCL63
Dorsal anterior cingulate cortex layer 1ipsiDACCL12
Dorsal anterior cingulate cortex layer 1aipsiDACCL1a3
Ventral anterior cingulate cortex layer 1ipsiVACCL12
Ventral anterior cingulate cortex layer 3ipsiVACCL3-0.5
Rostral part of the ventral anterior cingulate cortex layer 1ipsiVACCRL1-0.5
Rostral part of the ventral anterior cingulate cortex layer 3ipsiVACCRL3-0.5
Rostral part of the ventral anterior cingulate cortex layer 6ipsiVACCRL6-0.5
Prelimbic cortexipsiPrL2
Prelimbic cortex layer 1ipsiPrLL12
Prelimbic cortex layer 2ipsiPrLL22
Prelimbic cortex layer 3ipsiPrLL32
Prelimbic cortex layer 4ipsiPrLL42
Prelimbic cortex layer 5ipsiPrLL52
Prelimbic cortex layer 6ipsiPrLL62
Infralimbic areaipsiiLA-0.5
Infralimbic cortexipsiIL2
Infralimbic cortex layer 1ipsiILL12
Infralimbic cortex rostral partipsiILR1.5
Infralimbic cortex ventral part layer 1ipsiILvL12
Frontal association cortexipsiFrA1.5
Frontal cortex area 1ipsiFr12
Frontal cortex area 2 caudal partipsiFr2C1.5
Frontal cortex area 2 rostral partipsiFr2R1.5
Frontal cortex area 2 layer 1ipsiFr2L10.5
Frontal cortex area 2 dorsal part layer 1aipsiFr2DL1a3
Frontal cortex area 2 dorsal part layer 3ipsiFr2DL33
Frontal cortex area 2 dorsal part layer 5ipsiFr2DL53
Frontal cortex area 2 dorsal part layer 6ipsiFr2DL63
Parietal association cortexipsiPtA1
Parietal cortex posterior areaipsiParP2
Parietal cortex posterior area caudal part of the lateral portionipsiParPcL-0.5
Parietal cortex posterior area medial portionipsimPPC1
Parietal cortex posterior area rostrocaudal extent of the medial portionipsimrcPPC1
Temporal cortexipsiTE2
Temporal association area 2ipsiTe2-0.5
Temporal association cortex 1ipsiTeA-0.5
Primary auditory cortex layer 1ipsiAu1L12
Frontal polar cortex lateral partipsiFPl1
Frontal polar cortex medial partipsiFPm3
Insular cortexipsiICX3
Agranular insular cortexipsiAI3
Agranular insular cortex dorsal partipsiAID3
Agranular insular cortex dorsal part superficial layersipsiAIDsL-0.5
Agranular insular cortex dorsal part layer 1ipsiAIDL12
Agranular insular cortex layer 1ipsiAIL12
Agranular insular cortex rostral partipsiRAIC2
Agranular insular cortex posterior partipsiAIP2
Agranular insular cortex ventral partipsiAIV3
Agranular insular cortex ventral part jaw movement areaipsiAIVjm-0.5
Dysgranular insular cortexipsiDI1
Gustatory dysgranular insular cortex layer 5ipsiDIgL52
Visceral dysgranular insular cortexipsiDIv-0.5
Visceral dysgranular insular cortex layer 5ipsiDIvL52
Granular insular cortexipsiGI1
Perirhinal cortexipsiA353
Perirhinal cortex layer 1ipsiA35L12
Perirhinal cortex layer 5ipsiA35L52
Ectorhinal cortexipsiA362
Prefrontal cortexipsiPFC2
Prefrontal cortex dorsomedial partipsiPFCdm2
Motoric regionsipsiM-0.5
Lateral agranular prefrontal cortexipsiAGl1
Elbow flexion motor cortexipsiEFMCx1
Ankle dorsiflexion motor cortexipsiADFMCx0
Ankle plantar flexion motor cortexipsiAPFMCx0
Hip flexion motor cortexipsiHFMCx0
Lateral agranular prefrontal cortex layer 5ipsiAGlL51
Lateral agranular prefrontal cortex layer 6ipsiAGlL61
Jaw movement motor cortexipsiJMCx2.5
Medial prefrontal cortexipsimPFC2
Medial agranular prefrontal cortexipsiAGm1
Medial agranular prefrontal cortex layer 1ipsiAGmL1-0.5
Medial agranular prefrontal cortex layer 2ipsiAGmL21
Medial agranular prefrontal cortex layer 3ipsiAGmL31
Medial agranular prefrontal cortex layer 4ipsiAGmL41
Medial agranular prefrontal cortex layer 5ipsiAGmL52
Medial agranular prefrontal cortex layer 6ipsiAGmL61
Medial agranular prefrontal cortex rostral partipsirAGm1
Posterior part of the medial agranular prefrontal cortexipsiPoAGm1
Sensory regionsipsiSR-0.5
Primary somatosensory cortexipsiS12
Primary somatosensory cortex barrel fieldipsiS1BF2
Posteromedial barrel subfield C3ipsiPMBSFC3-0.5
Primary somatosensory cortex layer 5ipsiS1L52
Primary somatosensory cortex layer 6ipsiS1L62
Secondary somatosensory cortexipsiS22
Secondary somatosensory cortex layer 5ipsiS2L52
Visual regionsipsiVR2
Primary visual cortexipsiV11
Primary visual cortex layer 6ipsiV1L61
Secondary visual cortex layer 6ipsiV2L61
Secondary visual cortex medial areaipsiV2M-0.5
Orbital cortexipsiOrC-0.5
Lateral orbital cortexipsiLO2
Medial orbital cortexipsiMO3
Ventral orbital cortexipsiVO2
Ventrolateral orbital areaipsiVLO1
Ventrolateral orbital area layer 3ipsiVLOL33
Ventrolateral orbital area layer 1ipsiVLOL13
Anterior olfactory nucleus medial partipsiAONm1
Anterior olfactory nucleus ventral partipsiAONv2
Olfactory tubercleipsiTuO2
Olfactory tubercle lateral partipsiTuOL0.5
Lateral septal nucleusipsiLS-0.5
Lateral septal nucleus intermediate partipsiLSI2
Lateral septal nucleus ventral partipsiLSV1
Locus coeruleuscontraLC1
Submedius thalamic nucleus dorsal partcontraSubD2
Lateral amygdaloid nucleuscontraLA-0.5
Ventrolateral striatumcontraCPuvl1
HippocampuscontraHIPP-0.5
Anterior cingulate cortexcontraACC2
Prelimbic cortexcontraPrL2
Infralimbic cortexcontraIL2
Frontal cortex area 1contraFr12
Frontal cortex area 2 anterior partcontraFr2a2
Insular cortexcontraICX1
Agranular insular cortexcontraAI1
Agranular insular cortex rostral partcontraRAIC1
Jaw movement motor cortexcontraJMCx1
Medial prefrontal cortexcontramPFC2
Medial agranular prefrontal cortexcontraAGm2
Medial orbital cortexcontraMO2
Ventral orbital cortexcontraVO2
Ventrolateral orbital areacontraVLO2

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG0
Paralemniscal nucleusipsiPL0
Nucleus of DarkschewitschipsiDk3
Periaqueductal grayipsiPAG-0.5
Aqueductal part of periaqueductal grayipsiAPAG1
Dorsolateral periaqueductal grayipsiDLPAG1
Dorsolateral periaqueductal gray caudal partipsiPAGdlc1
Dorsolateral periaqueductal gray rostral partipsiPAGdlr1
Dorsomedial periaqueductal grayipsiDMPAG1
Lateral periaqueductal grayipsiLPAG1.5
Periaqueductal gray caudal dorsolateral partipsiPAGLDC1
Periaqueductal gray rostrolateral partipsiPAGRL1
Periaqueductal gray rostrocaudal extentipsiPAGroe1
Ventral periaqueductal grayipsiVPAG1.5
Ventrolateral periaqueductal grayipsiVLPAG1.5
Ventrolateral periaqueductal gray caudal partipsiPAGvlc1
Ventrolateral periaqueductal gray rostral partipsiPAGvlr2
Periventricular gray matteripsiPVG1.5
Superior colliculus lateral partipsiSCL1
Superior colliculus medial partipsimSC1
Superior colliculus basal partipsiSCb-0.5
Central tegmental fieldipsiTGAC2
Subpeduncular tegmental nucleusipsiSPTg0
Substantia nigra compact partipsiSNC2
Substantia nigra reticular partipsiSNR3
Ventral tegmental area A10ipsiVTA0
Parabrachial pigmented nucleusipsiPBP1
Caudal linear nucleus of the rapheipsiCLi1
Laterodorsal tegmental nucleusipsiLDTg3
Dorsal tegmental nucleusipsiDTg1.5
Pedunculopontine tegmental nucleusipsiPPTg3
Edinger Westphal nucleusipsiEW2
Interstitial nucleus of CajalipsiInC1
Cerebellar nucleiipsiDCeN-0.5
A5 noradrenaline cellsipsiA50
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC2
Nucleus incertusipsiNI0
Nucleus incertus pars compactaipsiNIc3
Nucleus incertus pars dissipataipsiNId0.5
Dorsomedial tegmental areaipsiDMTg3
Prepositus nucleusipsiPr1
Intermediate reticular nucleusipsiIRt1
Medial reticular formationipsiRFm-0.5
Mesencephalic reticular formationipsiMRF3
Deep mesencephalic nucleusipsiDpMe3
Pontine reticular nucleusipsiPRN-0.5
Pontine reticular nucleus oral partipsiPnO3
Pontine reticular nucleus ventral partipsiPnV1
Pontine reticular nucleus caudal partipsiPNC3
Cuneiforme nucleusipsiCnF2
Parabrachial nucleusipsiPB2
Parabrachial nucleus medialipsiPBnMe2
Medial parabrachial nucleus external partipsiMPBE-0.5
Parabrachial nucleus ventrolateral partipsiPBveLa2
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus alpha partipsiGiA1
Medullary reticular nucleusipsiMdD1
Subnucleus reticularis dorsalisipsiSRD1
Medullary reticular nucleus ventral partipsiMdV1
Parvicellular reticular nucleusipsiPCRt1
Subcoeruleus nucleusipsiSubC1
C3 adrenaline cellsipsiC3-10
Principal sensory trigeminal nucleusipsiPr50
Spinal trigeminal nucleus caudal partipsiSp5C0
Spinal trigeminal nucleus interpolar partipsiSp5I0
Spinal trigeminal nucleus oral partipsiSp5O0
Vestibular nucleiipsiVnc2
Nucleus of the solitary tractipsiSol1
Parasolitary nucleusipsiPSol-2
Dorsal motor nucleus of vagusipsi10-2
Raphe nucleiipsiRAN-0.5
Dorsal raphe nucleusipsiDR1.5
Dorsal raphe nucleus caudal partipsiDRC3
Dorsal raphe nucleus dorsal partipsiDRD2
Dorsal raphe nucleus rostral partipsiDRr2
Dorsal raphe nucleus ventral partipsiDRV3
Dorsal raphe nucleus ventrolateral partipsiDRVL3
Rostral linear nucleus of the rapheipsiRLi1
Median raphe nucleusipsiMnR1.5
Superior central raphe nucleusipsiCS1
Paramedian raphe nucleusipsiPMnR0
Pontine raphe nucleusipsiPnR1
Raphe interpositus nucleusipsiRIP1
Raphe magnus nucleusipsiRMg1
Raphe obscurus nucleusipsiROb0
Raphe pallidus nucleusipsiRPa0
Rostral ventrolateral medullaipsiRVLM0
A1 noradrenergic cellsipsiA1-0.5
Cuneate nucleusipsiCu1
Gracile nucleus principal partipsiGr0
Dorsal paragigantocellular nucleusipsiDPGi1
Lateral paragigantocellular nucleusipsiLPGi0
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the vertical limb of the diagonal bandipsiVDB2
Substantia innominata dorsal partipsiSID1
Intermediate hypothalamic cell groupsipsiIHCG2
Medial preoptic areaipsiMPA0.5
HypothalamusipsiHYPO1
Dorsomedial hypothalamic nucleusipsiDMHy2
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0.5
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar0.5
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR0.5
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp0
Lateral zoneipsiLHA1
Lateral hypothalamic areaipsiLH3
Dorsolateral hypothalamusipsiDLH-0.5
Lateral hypothalamic area juxtadorsomedial regionipsiJDM1
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm0
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa0
Lateral hypothalamic area perifornical partipsiPFx1
Lateral hypothalamic area ventral partipsiLHAvp-0.5
Anterior hypothalamic areaipsiAHA2
Anterior hypothalamic area central partipsiAHAC1
Anterior hypothalamic area immediately caudal to the suprachiasmatic areaipsiAHAcSCh0.5
Anterior part of the anterior hypothalamic nucleusipsiAHna1
Dorsal hypothalamic areaipsiDA2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM3
Posterior hypothalamic areaipsiPHA3
Posterior hypothalamic nucleus caudal partipsiPHCa1
Posterior hypothalamic nucleus rostral partipsiPHRo1
Ventromedial hypothalamic nucleusipsiVMH2
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL0.5
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP-0.5
Paraventricular hypothalamic nucleusipsiPa2
Preoptic periventricular nucleusipsiPePO0.5
Suprachiasmatic nucleusipsiSCh1
Suprachiasmatic nucleus dorsal divisionipsiSChd0.5
Region dorsal to suprachiasmatic nucleusipsiSChDT0.5
Suprachiasmatic preoptic nucleusipsiPSCh0.5
Incerto hypothalamic areaipsiicHYPO1
Medial mammillary nucleus median partipsiMMnm3
Premammillary nucleus dorsal partipsiPMD0.5
Supramammillar nucleusipsiSuM-0.5
Supramammillar nucleus lateral part lateral subpartipsiSuMLL1
Supramammillar nucleus lateral part medial subpartipsiSuMLM2
Supramammillar nucleus medial partipsiSuMM1
A8 dopamine cells retrorubral groupipsiRRF1
Perifornical nucleusipsiPeF1
Retrochiasmatic area lateral partipsiRChL1
Retrochiasmatic area immediately caudal to the suprarchiasmatic areaipsiRChcSCh0.5
Central medial thalamic nucleus caudal partipsiCMca2
Central medial thalamic nucleus rostral partipsiCMr2
Parafascicular thalamic nucleusipsiPF2
Rhomboid thalamic nucleusipsiRh1
Mediodorsal thalamic nucleusipsiMD2
Paratenial thalamic nucleusipsiPT0
Paraventricular thalamic nucleus anterior partipsiPVA0
Paraventricular thalamic nucleus caudal partipsiPVca1
Paraventricular thalamic nucleus dorsal partipsiPVdo1
Paraventricular thalamic nucleus posterior partipsiPVP1
Paraventricular thalamic nucleus rostral partipsiPVr1
Paraventricular thalamic nucleus ventral partipsiPVV1
Reuniens thalamic nucleusipsiRe1
Ventral posteromedial thalamic nucleusipsiVPM2
Ventral thalamusipsiVNT1
Reticular thalamic nucleusipsiRt1
Reticular thalamic nucleus rostral partipsiRtr3
Medial subdivision of the rostral part of the reticular thalamic nucleusipsiRtrM3
Zona incertaipsiZI2
Anterior pretectal nucleusipsiAPT-0.5
Basolateral amygdaloid nucleusipsiBL1
Basomedial amygdaloid nucleusipsiBM1
Anterior basomedial nucleusipsiBMA3
Bed nucleus of the stria terminalis lateral division dorsal partipsiBSTLD-0.5
Central amygdaloid nucleusipsiCe1
Central amygdaloid nucleus medial divisionipsiCeM2
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM1
Anterior cortical amygdaloid nucleusipsiACo2
Amygdalohippocampal areaipsiAHi2
Anterior part of the claustrumipsiACl3
Globus pallidusipsiGP1.5
Peripallidal regionipsiPePa3
Subpallidal regionipsiSuPa2
Parasubthalamic nucleusipsiPSTh4
Dentate gyrusipsiDG1.5
Parahippocampal regionipsiPHR1
Retrosplenial cortexipsiRSCx-0.5
Anterior cingulate cortexipsiACC2
Prelimbic cortexipsiPrL1.5
Infralimbic cortexipsiIL2
Infralimbic cortex rostral partipsiILR1.5
Frontal cortex area 2ipsiFr22
Parietal cortex posterior area medial portionipsimPPC1
Temporal association area 2ipsiTe2-0.5
Insular cortexipsiICX3
Agranular insular cortexipsiAI3
Agranular insular cortex rostral partipsiRAIC2
Agranular insular cortex ventral part jaw movement areaipsiAIVjm-0.5
Perirhinal cortexipsiA35-0.5
Lateral agranular prefrontal cortexipsiAGl3
Jaw movement motor cortexipsiJMCx2.5
Medial prefrontal cortexipsimPFC0.5
Medial agranular prefrontal cortexipsiAGm2
Medial agranular prefrontal cortex rostral partipsirAGm2
Posterior part of the medial agranular prefrontal cortexipsiPoAGm1
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Ventral medial prefrontal cortexipsivmPFC-0.5
Medial orbital cortexipsiMO2
Ventral orbital cortexipsiVO0
Intergeniculate leafipsiIGL-0.5
Intergeniculate leaf rostrocaudal partipsiIGLR2
Ventral lateral geniculate nucleusipsiVLG-0.5
Ventral lateral geniculate nucleus parvicellular partipsiVLGPC-0.5
Interpeduncular nucleusipsiIP0
Lateral septal nucleus caudal partipsiLSc1
Spinal cordipsiMES2
Cervical segment 1ipsiCS1-3
Intermediomedial cell column C1ipsiIMMC1-3
Lateral cervical nucleus C1ipsiLatCC1-3
Lateral spinal nucleus C1ipsiLSpC1-3
Area X C1ipsiSCL10C1-3
Dorsal horn C1ipsiDHC1-3
Spinal cord layer 1 C1ipsiSCL1C1-3
Cervical segment 2ipsiCS2-3
Intermediomedial cell column C2ipsiIMMC2-3
Lateral cervical nucleus C2ipsiLatCC2-3
Lateral spinal nucleus C2ipsiLSpC2-3
Area X C2ipsiSCL10C2-3
Dorsal horn C2ipsiDHC2-3
Spinal cord layer 1 C2ipsiSCL1C2-3
Cervical segment 4ipsiCS4-3
Intermediomedial cell column C4ipsiIMMC4-3
Lateral cervical nucleus C4ipsiLatCC4-3
Lateral spinal nucleus C4ipsiLSpC4-3
Area X C4ipsiSCL10C4-3
Dorsal horn C4ipsiDHC4-3
Spinal cord layer 1 C4ipsiSCL1C4-3
Cervical segment 5ipsiCS5-3
Intermediomedial cell column C5ipsiIMMC5-3
Lateral cervical nucleus C5ipsiLatCC5-3
Lateral spinal nucleus C5ipsiLSpC5-3
Area X C5ipsiSCL10C5-3
Dorsal horn C5ipsiDHC5-3
Spinal cord layer 1 C5ipsiSCL1C5-3
Cervical segment 7ipsiCS7-3
Intermediomedial cell column C7ipsiIMMC7-3
Lateral cervical nucleus C7ipsiLatCC7-3
Lateral spinal nucleus C7ipsiLSpC7-3
Area X C7ipsiSCL10C7-3
Dorsal horn C7ipsiDHC7-3
Spinal cord layer 1 C7ipsiSCL1C7-3
Cervical segment 8ipsiCS8-3
Intermediomedial cell column C8ipsiIMMC8-3
Lateral cervical nucleus C8ipsiLatCC8-3
Lateral spinal nucleus C8ipsiLSpC8-3
Area X C8ipsiSCL10C8-3
Dorsal horn C8ipsiDHC8-3
Spinal cord layer 1 C8ipsiSCL1C8-3
Thoracal segment 4ipsiT4-3
Intermediomedial cell column T4ipsiIMMT4-3
Lateral spinal nucleus T4ipsiLSpT4-3
Area X T4ipsiSCL10T4-3
Dorsal horn T4ipsiDHT4-3
Spinal cord layer 1 T4ipsiSCL1T4-3
Thoracal segment 8ipsiT8-3
Intermediomedial cell column T8ipsiIMMT8-3
Lateral spinal nucleus T8ipsiLSpT8-3
Area X T8ipsiSCL10T8-3
Dorsal horn T8ipsiDHT8-3
Spinal cord layer 1 T8ipsiSCL1T8-3
Thoracal segment 12ipsiT12-3
Intermediomedial cell column T12ipsiIMMT12-3
Lateral spinal nucleus T12ipsiLSpT12-3
Area X T12ipsiSCL10T12-3
Dorsal horn T12ipsiDHT12-3
Spinal cord layer 1 T12ipsiSCL1T12-3
Lumbar segment 1ipsiL1-3
Intermediomedial cell column L1ipsiIMML1-3
Lateral spinal nucleus L1ipsiLSpL1-3
Area X L1ipsiSCL10L1-3
Dorsal horn L1ipsiDHL1-3
Spinal cord layer 1 L1ipsiSCL1L1-3
Lumbar segment 2ipsiL2-3
Intermediomedial cell column L2ipsiIMML2-3
Lateral spinal nucleus L2ipsiLSpL2-3
Area X L2ipsiSCL10L2-3
Dorsal horn L2ipsiDHL2-3
Spinal cord layer 1 L2ipsiSCL1L2-3
Lumbar segment 3ipsiL3-3
Intermediomedial cell column L3ipsiIMML3-3
Lateral spinal nucleus L3ipsiLSpL3-3
Area X L3ipsiSCL10L3-3
Dorsal horn L3ipsiDHL3-3
Spinal cord layer 1 L3ipsiSCL1L3-3
Lumbar segment 4ipsiL4-3
Intermediomedial cell column L4ipsiIMML4-3
Lateral spinal nucleus L4ipsiLSpL4-3
Area X L4ipsiSCL10L4-3
Dorsal horn L4ipsiDHL4-3
Spinal cord layer 1 L4ipsiSCL1L4-3
Lumbar segment 5ipsiL5-3
Intermediomedial cell column L5ipsiIMML5-3
Lateral spinal nucleus L5ipsiLSpL5-3
Area X L5ipsiSCL10L5-3
Dorsal horn L5ipsiDHL5-3
Spinal cord layer 1 L5ipsiSCL1L5-3
Lumbar segment 6ipsiL6-3
Intermediomedial cell column L6ipsiIMML6-3
Lateral spinal nucleus L6ipsiLSpL6-3
Area X L6ipsiSCL10L6-3
Dorsal horn L6ipsiDHL6-3
Spinal cord layer 1 L6ipsiSCL1L6-3
Sacral segment 2ipsiSa2-3
Intermediomedial cell column S2ipsiIMMS2-3
Lateral spinal nucleus S2ipsiLSpS2-3
Area X S2ipsiSCL10S2-3
Dorsal horn S2ipsiDHS2-3
Spinal cord layer 1 S2ipsiSCL1S2-3
Central graycontraCG0
Superior colliculus lateral partcontraSCL1
Superior colliculus medial partcontramSC1
Mesencephalic reticular formationcontraMRF1
Pontine reticular nucleus oral partcontraPnO1
Pontine reticular nucleus caudal partcontraPNC-0.5
Parabrachial nucleuscontraPB1
Medullary reticular nucleus dorsal partcontraMdDd1
Intermediate hypothalamic cell groupscontraIHCG-0.5
Medial preoptic areacontraMPA-0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Lateral zonecontraLHA-0.5
Anterior hypothalamic areacontraAHA-0.5
Anterior hypothalamic area central partcontraAHAC1.5
Anterior hypothalamic area immediately caudal to the suprachiasmatic areacontraAHAcSCh-0.5
Anterior part of the anterior hypothalamic nucleuscontraAHna1.5
Dorsal hypothalamic areacontraDA-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Preoptic periventricular nucleuscontraPePO-0.5
Suprachiasmatic nucleus dorsal divisioncontraSChd-0.5
Region dorsal to suprachiasmatic nucleuscontraSChDT-0.5
Suprachiasmatic preoptic nucleuscontraPSCh-0.5
Perifornical nucleuscontraPeF-0.5
Retrochiasmatic area lateral partcontraRChL1.5
Retrochiasmatic area immediately caudal to the suprarchiasmatic areacontraRChcSCh-0.5
Reticular thalamic nucleus rostral partcontraRtr3
Medial subdivision of the rostral part of the reticular thalamic nucleuscontraRtrM3
Zona incerta caudal partcontraZIC-0.5
Globus palliduscontraGP1
Parasubthalamic nucleuscontraPSTh1
Dentate gyruscontraDG0
Anterior cingulate cortexcontraACC2
Frontal cortex area 2contraFr22
Agranular insular cortexcontraAI1
Agranular insular cortex rostral partcontraRAIC1
Jaw movement motor cortexcontraJMCx1
Medial agranular prefrontal cortexcontraAGm2
Cervical segment 1contraCS14
Cervical segment 2contraCS24
Cervical segment 3contraCS33
Cervical segment 4contraCS42
Cervical segment 5contraCS52
Cervical segment 6contraCS61
Cervical segment 7contraCS72
Cervical segment 8contraCS82
Thoracal segment 1contraT11
Thoracal segment 2contraT21
Thoracal segment 3contraT31
Thoracal segment 4contraT40.5
Thoracal segment 5contraT50.5
Thoracal segment 6contraT60.5
Thoracal segment 7contraT71
Thoracal segment 8contraT80.5
Thoracal segment 9contraT92
Thoracal segment 10contraT102
Thoracal segment 11contraT112
Thoracal segment 12contraT121
Thoracal segment 13contraT131
Lumbar segment 1contraL13
Lumbar segment 2contraL23
Lumbar segment 3contraL33
Lumbar segment 4contraL42
Lumbar segment 5contraL52
Lumbar segment 6contraL63
Sacral segment 1contraSa13
Sacral segment 2contraSa23
Sacral segment 3contraSa31
Sacral segment 4contraSa41
Coccygeal segment 1contraCo11
Coccygeal segment 2contraCo21
Coccygeal segment 3contraCo31

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications