University of Rostock

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Rat connectome



Striatal patch compartment left


Abbreviation
SPC
Color       
Superior regionsCaudate putamen

SynonymsAbbr.Language
Caudate putamen striosomen  
Caudate putamen striosoms  
Striosomes  
Striosomal compartment  
Striatal patch compartmentSPCEng

Output to

NameSideAbbr.WeightDetails
Substantia nigra compact partipsiSNC3
Substantia nigra reticular partipsiSNR3
Globus pallidusipsiGP-0.5
Medial globus pallidusipsiMGP-0.5

Input from

NameSideAbbr.WeightDetails
Substantia nigra compact partipsiSNC-0.5
Substantia nigra compact part dorsal tieripsiSNCD-0.5
Substantia nigra compact part dorsal tier medial divisionipsiSNCDm-0.5
Substantia nigra compact part ventral tieripsiSNCV-0.5
Substantia nigra compact part ventral tier dopaminergic neuron populationipsiSNCVdopa0.5
Ventral tegmental area A10ipsiVTA-0.5
Central medial thalamic nucleusipsiCM-0.5
Centrolateral thalamic nucleusipsiCL-0.5
Paracentral thalamic nucleusipsiPC-0.5
Parafascicular thalamic nucleusipsiPF-0.5
Rhomboid thalamic nucleusipsiRh-0.5
Intermediodorsal thalamic nucleusipsiIMD-0.5
Paratenial thalamic nucleusipsiPT-0.5
Paraventricular thalamic nucleusipsiPV-0.5
Medial globus pallidus rostral partipsiMGPr3
Anterior cingulate cortexipsiACC-0.5
Anterior cingulate cortex deep layer 5ipsiACCDL5-0.5
Anterior cingulate cortex layer 6ipsiACCL6-0.5
Cingulate cortex layer 3ipsiCgL30
Cingulate cortex layer 5 bipsiCgL5b2
Cingulate cortex layer 6ipsiCgL61
Prelimbic cortexipsiPrL-0.5
Prefrontal cortexipsiPFC-0.5
Lateral agranular prefrontal cortexipsiAGl-0.5
Lateral agranular prefrontal cortex layer 3ipsiAGlL30
Lateral agranular prefrontal cortex layer 5aipsiAGlL5a0
Lateral agranular prefrontal cortex layer 5bipsiAGlL5b1
Lateral agranular prefrontal cortex layer 6ipsiAGlL60
Medial agranular prefrontal cortex layer 3ipsiAGmL30
Medial agranular prefrontal cortex layer 5 aipsiAGmL5a1
Medial agranular prefrontal cortex layer 5 bipsiAGmL5b2
Medial agranular prefrontal cortex layer 6ipsiAGmL60
Primary somatosensory cortex layer 5 aipsiS1L5a0
Primary somatosensory cortex layer 5 bipsiS1L5b0
Primary somatosensory cortex layer 6ipsiS1L60
Primary somatosensory cortex layer 4ipsiS1L40
Primary somatosensory cortex layer 3ipsiS1L30
Cingulate cortex layer 3contraCgL30
Cingulate cortex layer 5 bcontraCgL5b2
Cingulate cortex layer 6contraCgL61
Prelimbic cortexcontraPrL-0.5
Lateral agranular prefrontal cortex layer 3contraAGlL30
Lateral agranular prefrontal cortex layer 5acontraAGlL5a0
Lateral agranular prefrontal cortex layer 5bcontraAGlL5b1
Medial agranular prefrontal cortex layer 3contraAGmL30
Medial agranular prefrontal cortex layer 5 acontraAGmL5a1
Medial agranular prefrontal cortex layer 5 bcontraAGmL5b2
Primary somatosensory cortex layer 4contraS1L40

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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