University of Rostock

Department of Anatomy

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Rat connectome



Substantia nigra reticular part medial tier left


Abbreviation
SNRm
Color       
Superior regionsSubstantia nigra reticular part

SynonymsAbbr.Language
Substantia nigra pars reticulata medial part  
Substantia nigra pars reticulata medial  
Substantia nigra reticular part medial tierSNRmEng

SubregionsSide
Caudal medial substantia nigra reticular partleft
Medial half of the substantia nigra reticular partleft
Rostral one-third of the medial substantia nigra reticular partleft
Substantia nigra reticular part medial two-thirdsleft
Substantia nigra reticular part medial tier mediallyleft
Substantia nigra reticular part medial tier centrallyleft
Substantia nigra reticular part medial tier laterallyleft
Substantia nigra reticular part medial one thirdleft

Output to

NameSideAbbr.WeightDetails
Paralemniscal nucleusipsiPL1
Pedunculopontine tegmental nucleusipsiPPTg1
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus oral part central partipsiPnOC1
Pontine reticular nucleus caudal partipsiPNC-0.5
Cuneiforme nucleus caudal partipsiCnFc1
Parvicellular reticular nucleusipsiPCRt1
Central medial thalamic nucleusipsiCM3
Centrolateral thalamic nucleusipsiCL3
Paracentral thalamic nucleusipsiPC3
Parafascicular thalamic nucleusipsiPF4
Mediodorsal thalamic nucleusipsiMD1
Mediodorsal thalamic nucleus lateral partipsiMDL4
Ventral part of the lateral mediodorsal thalamic nucleusipsiMDLV1
Rostrocaudal part of the lateral mediodorsal thalamic nucleusipsiMDLrc1
Mediodorsal thalamic nucleus medial partipsiMDM4
Midline group of the dorsal thalamusipsiMTN1
Reuniens thalamic nucleusipsiRe0.5
Ventrolateral thalamic nucleus medial partipsiVLme4
Ventromedial thalamic nucleusipsiVM1
Intralaminar nucleiipsiILN4
Reticular thalamic nucleus rostral partipsiRtr4
Ventral medial nucleus of the thalamusipsiVMT4
Medial part of tje ventral medial nucleus of the thalamusipsiVMTM4
Rostrocaudal extent of the ventral medial nucleus of the thalamusipsiVMTRC4
Caudate putamenipsiCPu0.5
Anterior striatumipsiAStri0.5
Medial striatumipsiCPum-0.5
Dorsal striatumipsiCPud-0.5
Dorsolateral striatumipsiCPudl0.5
Rostral striatumipsiCPur-0.5
Rostrodorsal striatumipsiCPurd0.5

Input from

NameSideAbbr.WeightDetails
Globus pallidusipsiGP2
Globus pallidus rostrolateral partipsiGPrL2
Ventral pallidumipsiVP2
StriatumipsiSTR2
Accumbens nucleusipsiAc1
Accumbens nucleus coreipsiAcbC3
Accumbens nucleus core dorsolateral partipsiAcbCdl2
Caudate putamenipsiCPu3
Medial striatumipsiCPum2
Medial part of caudalmost striatumipsiCPumcm2
Dorsally in the medial part of the dorsal striatumipsiCPudmd3
Rostromedial striatumipsiCPurm-0.5
Dorsal region of the rostrocaudal intermediate caudate putamenipsiCPurdcim3
Subthalamic nucleus caudomedial partipsiSThCM-0.5
Subthalamic nucleus middle partipsiSThm2
Subthalamic nucleus ventral partipsiSThv-0.5
Medial prefrontal cortexipsimPFC1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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