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Rat connectome



Mediodorsal thalamic nucleus medial part left


Abbreviation
MDM
Color       
Superior regionsMediodorsal thalamic nucleus

SynonymsAbbr.Language
Mediodorsal thalamic nucleus medial division  
Mediodorsal nucleus medial part Eng
Medial mediodorsal thalamic nucleus  
 MDmEng
Medial portion of the mediodorsal thalamic nucleus Eng
Mediodorsal thalamuic nucleus medial portion Eng
Mediodorsal nucleus thalamus medial partMDmEng
Mediodorsal thalamic nucleus medial partMDMEng
Medial subdivision of the mediodorsal thalamic nucleus Eng
Medial division of the mediodorsal thalamic nucleus Eng
Limbic mediodorsal thalamus Eng
Mediodorsal thalamic nucleus medial aspect Eng

SubregionsSide
Middle to dorsal part of the medial mediodorsal thalamic nucleusleft
Middle to caudal part of the medial mediodorsal thalamic nucleusleft
Caudal part of the mediodorsal thalamic nucleus medial partleft
Lateral part of the mediodorsal thalamic nucleus medial partleft
Rostral part of medial segment of the mediodorsal thalamic nucleusleft
Rostral two-thirds of the medial segment of the mediodorsal thalamic nucleusleft
Ventral part of the medial segment of the mediodorsal thalamic nucleusleft
Posterior part of the medial segment of the mediodorsal thalamic nucleusleft
Mediodorsal thalamic nucleus dorsal part of the medial partleft

Output to

NameSideAbbr.WeightDetails
Paralemniscal nucleusipsiPL3
Substantia innominataipsiSI-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Mediodorsal thalamic nucleusipsiMD3
Reticular thalamic nucleus intermediate partipsiRti-10
Reticular thalamic nucleus rostral partipsiRtr-10
Amygdaloid complexipsiAC1
Basal dorsal nucleus anteromedial areaipsiBnDam-0.5
Basolateral amygdaloid nucleusipsiBL-0.5
Anterior basolateral nucleusipsiBLA2
Basolateral amygdaloid nucleus ventral partipsiBLve-0.5
Posterior basolateral nucleusipsiBLP1
Lateral amygdaloid nucleusipsiLA-0.5
Lateral nucleus ventral portionipsiLAVp-0.5
Ventromedial part of the lateral nucleusipsiLaVM1
Amygdalopiriform transition areaipsiAPir1
Medial amygdaloid nucleusipsiMe-0.5
Ventral pallidumipsiVP-0.5
StriatumipsiSTR1.5
Accumbens nucleusipsiAc-0.5
Accumbens nucleus shellipsiAcbSh-0.5
Dorsomedial shellipsiAcbShdm-10
Caudate putamenipsiCPu-0.5
Rostromedial striatumipsiCPurm-0.5
Lateral entorhinal cortex ventral partipsiVLEA1
Lateral entorhinal cortex ventromedial partipsiVMEAL1
Piriform cortexipsiPir-0.5
Retrosplenial dysgranular cortexipsiRSdys0
Cingulate cortexipsiCg-0.5
Anterior cingulate cortexipsiACC-0.5
Cingulate cortex area 1 caudal partipsiCg1c0
Cingulate cortex area 2 caudal partipsiCg2c0
Dorsal anterior cingulate cortexipsiDACC3
Ventral cingulate cortexipsiCgV0
Prelimbic cortexipsiPrL3
Prelimbic cortex rostral partipsiPrLr-0.5
Infralimbic areaipsiiLA3
Infralimbic cortexipsiIL4
Infralimbic cortex rostral partipsiILR2.5
Frontal association cortexipsiFrA-0.5
Frontal cortex area 2ipsiFr23
Insular cortexipsiICX-0.5
Agranular insular cortexipsiAI-0.5
Agranular insular cortex dorsal partipsiAID-0.5
Agranular insular cortex dorsal part deep layersipsiAIDdL-0.5
Agranular insular cortex dorsal part layer 3ipsiAIDL3-0.5
Agranular insular cortex dorsal part superficial layersipsiAIDsL1
Agranular insular cortex posterior partipsiAIP-0.5
Agranular insular cortex ventral partipsiAIV-0.5
Granular insular cortexipsiGI2
Prefrontal cortexipsiPFC2
Motoric regionsipsiM-1
Lateral prefrontal cortexipsilPFC0.5
Lateral agranular prefrontal cortexipsiAGl-0.5
Medial prefrontal cortexipsimPFC0.5
Medial agranular prefrontal cortexipsiAGm-0.5
Medial agranular prefrontal cortex rostral partipsirAGm2
Caudal whisker areaipsiCS1BF1
Ventral medial prefrontal cortexipsivmPFC-0.5
Secondary visual cortexipsiV20
Orbital cortexipsiOrC-0.5
Dorsolateral orbital cortexipsiDLO-0.5
Lateral orbital cortexipsiLO-0.5
Medial orbital cortexipsiMO-0.5
Ventral orbital cortexipsiVO-0.5
Ventrolateral orbital areaipsiVLO-0.5
Olfactory tubercle medial partipsiTuOMP0.5
Prefrontal cortexcontraPFC0

Input from

NameSideAbbr.WeightDetails
MesencephalonipsiMEC2
Paralemniscal nucleusipsiPL3
Periaqueductal grayipsiPAG-10
Dorsal periaqueductal grayipsiDPAG1
Periaqueductal gray rostrocaudal extentipsiPAGroe3
Ventral periaqueductal grayipsiVPAG3
Periventricular gray matteripsiPVG0
Superior colliculus intermediate layersipsiSCi3
Superior colliculus deep layersipsiSCd3
Substantia nigra A9ipsiSN3
Substantia nigra compact partipsiSNC2
Substantia nigra lateral partipsiSNL3
Substantia nigra reticular partipsiSNR3
Substantia nigra reticular part dorsomedial tieripsiSNRDM2
Substantia nigra reticular part medial tieripsiSNRm4
Substantia nigra reticular part ventral subdivisionipsiSNRv2
Substantia nigra reticular part ventrolateral tieripsiSNRVL1
Ventral tegmental area A10ipsiVTA-0.5
Laterodorsal tegmental nucleusipsiLDTg-0.5
Dorsal tegmental nucleusipsiDTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Locus coeruleusipsiLC3
Nucleus incertus pars compactaipsiNIc2
Dorsomedial tegmental areaipsiDMTg3
Intermediate reticular nucleusipsiIRt2
Mesopontine reticular formationipsiMPRF-0.5
Mesencephalic reticular formationipsiMRF3
Pontine reticular nucleusipsiPRN3
Cuneiforme nucleus lateral partipsiCnFL-0.5
Horizontal band of labeled nucleus reticularis cuneiformisipsiCnFHo-0.5
Parabrachial nucleusipsiPB3
Gigantocellular reticular nucleusipsiGi2
Parvicellular reticular nucleusipsiPCRt2
Area postremaipsiAP-10
Mesencephalic trigeminal nucleusipsiMe52
Principal sensory trigeminal nucleusipsiPr52
Trigeminal subnucleus caudalisipsi5SSC1
Medial vestibular nucleusipsiMVe2
Nucleus of the solitary tractipsiSol-0.5
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC1
Median raphe nucleusipsiMnR1
Superior central raphe nucleusipsiCS3
Pontine raphe nucleusipsiPnR0
Raphe magnus nucleusipsiRMg-0.5
Raphe magnus nucleus dorsal partipsiDRMg-10
A1 noradrenergic cellsipsiA11
Paragigantocellular reticular nucleusipsiPGi1
Basal forebrainipsiBAF3
Islands of CallejaipsiICj1
Diagonal band of BrocaipsiDBB1
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the vertical limb of the diagonal band ventral partipsiVDBve2
Medial septal nucleusipsiMS-10
Substantia innominataipsiSI2
Substantia innominata dorsal partipsiSID3
Substantia innominata ventral partipsiSIV-0.5
Preoptic regionipsiPREO-10
Lateral preoptic areaipsiLPO2
Medial preoptic areaipsiMPA2
Median preoptic nucleusipsiMnPO2
Tenia tectaipsiTT-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC1
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar1
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR1
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp1
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area juxtadorsomedial regionipsiJDM1
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm2.5
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0.5
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0.5
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa2
Lateral hypothalamic area perifornical partipsiPFx1
Lateral hypothalamic area rostral partipsiLHro-0.5
Anterior hypothalamic area posterior partipsiAHAP0
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Posterior hypothalamic areaipsiPHA2
Ventromedial hypothalamic nucleusipsiVMH2
Ventromedial hypothalamic nucleus central partipsiVMHC-0.5
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1
Arcuate nucleusipsiArc2
Periventricular hypothalamic nucleusipsiPe2
Suprachiasmatic nucleusipsiSCh-10
Lateral mammillary nucleusipsiLM1
Supramammillar nucleusipsiSuM1
Anteromedial thalamic nucleusipsiAM-10
Rhomboid thalamic nucleusipsiRh1
Paraventricular thalamic nucleusipsiPV-10
Reuniens thalamic nucleusipsiRe1
Reticular thalamic nucleusipsiRt3
Reticular thalamic nucleus caudal partipsiRtc-10
Reticular thalamic nucleus intermediate partipsiRti-10
Reticular thalamic nucleus rostral partipsiRtr-10
Zona incertaipsiZI-10
Lateral habenular nucleusipsiLHb-10
Anterior pretectal nucleusipsiAPT3
Ventral part of the caudal half of the anterior pretectal nucleusipsiAPTcaV3
Amygdaloid complexipsiAC1
Laterobasal nuclear complexipsiLBNC-0.5
Basal nucleusipsiBnc1
Accessory basal nucleusipsiAB1
Basolateral amygdaloid nucleusipsiBL2
Anterior basolateral nucleusipsiBLA-0.5
Posterior basolateral nucleusipsiBLP-0.5
Basomedial amygdaloid nucleusipsiBM2
Anterior basomedial nucleusipsiBMA0.5
Posterior basomedial nucleusipsiBMP0.5
Lateral amygdaloid nucleusipsiLA1
Bed nucleus of the stria terminalisipsiBST0.5
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm1
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM2
Bed nucleus of the stria terminalis anterior ventral areaipsiBSTAV2
Bed nucleus of the stria terminalis magnocellular nucleusipsiBSTmc1
Central amygdaloid nucleusipsiCe2
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM2
Central division of sublenticular extended amygdalaipsiSLEAc-0.5
Amygdalopiriform transition areaipsiAPir1
Anterior amygdaloid areaipsiAA1
Cortical amygdaloid nucleusipsiCAn1
Anterior cortical amygdaloid nucleusipsiACo2
Posterior amygdaloid nucleusipsiCOAp1
Periamygdaloid complexipsiPAC1
Medial amygdaloid nucleusipsiMe1
Amygdalohippocampal areaipsiAHi2
ClaustrumipsiCl2
Globus pallidusipsiGP2
Dorsal globus pallidusipsiDGP1
Ventral pallidumipsiVP3
Ventral pallidum caudal partipsiVPc3
Ventral pallidum lateral partipsiVPlp3
Ventral pallidum medial partipsiVPm-10
Ventral pallidum rostral partipsiVPr-10
Ventral pallidum rostromedial partipsiVPrm2
Ventral pallidum ventromedial partipsiVPvm-10
Accumbens nucleusipsiAc-0.5
Accumbens nucleus shellipsiAcbSh-10
Accumbens nucleus shell caudal partipsiAcbShc-10
Caudate putamenipsiCPu2
Ventral striatumipsiCPuv0
Fundus of the striatumipsiFS0
Parasubthalamic nucleusipsiPSTh1
Subthalamic nucleus medial partipsiSThM1
Subthalamic nucleus medial capipsiSThMc1
Field CA1 of hippocampusipsiCA1-10
Field CA2 of hippocampusipsiCA2-10
Subiculum ventral partipsiSv-10
Entorhinal cortexipsiEnt1
Entorhinal cortex layer 5ipsiEntL51
Lateral entorhinal cortexipsiLEnt-0.5
Piriform cortexipsiPir1
Retrosplenial agranular cortexipsiRSA-0.5
Cingulate cortexipsiCg2
Anterior cingulate cortexipsiACC2.5
Cingulate cortex area 1ipsiCg13
Cingulate cortex area 1 layer 3ipsiCg1L33
Cingulate cortex area 1 layer 5ipsiCg1L53
Cingulate cortex area 1 layer 6ipsiCg1L63
Cingulate cortex area 2ipsiCg23
Cingulate area 2 layer 3ipsiCG2L33
Cingulate area 2 layer 5ipsiCg2L53
Cingulate cortex area 2 layer 6ipsiCg2L63
Dorsal cingulate cortexipsiDCC1
Prelimbic cortexipsiPrL3
Prelimbic cortex layer 3ipsiPrLL31
Prelimbic cortex layer 5ipsiPrLL51
Prelimbic cortex layer 6ipsiPrLL63
Prelimbic cortex rostral partipsiPrLr-0.5
Infralimbic areaipsiiLA2
Infralimbic cortexipsiIL4
Infralimbic cortex layer 5ipsiILL51
Infralimbic cortex layer 6ipsiILL63
Infralimbic cortex layer 3ipsiILL31
Infralimbic cortex rostral partipsiILR2.5
Frontal polar cortex layer 4ipsiFPL42
Frontal polar cortex layer 5ipsiFPL52
Frontal polar cortex layer 6ipsiFPL62
Insular cortexipsiICX2
Agranular insular cortexipsiAI1
Agranular insular cortex rostral partipsiRAIC3
Agranular insular cortex posterior partipsiAIP3
Agranular insular cortex posterior part dorsal partipsiAIPpd3
Ventral part of the agranular posterior insular cortexipsiAIPV0
Agranular insular cortex ventral partipsiAIV2
Dysgranular insular cortexipsiDI2
Granular insular cortexipsiGI2
Dorsal peduncular cortexipsiDP1
Prefrontal cortexipsiPFC2
Frontal pole of prefrontal cortexipsiFPFC3
Prefrontal cortex layer 5ipsiPFCL5-0.5
Lateral prefrontal cortexipsilPFC3
Lateral agranular prefrontal cortexipsiAGl3
Lateral agranular prefrontal cortex layer 6ipsiAGlL63
Medial prefrontal cortexipsimPFC3
Medial prefrontal cortex ventral partipsimPFCV-0.5
Medial agranular prefrontal cortexipsiAGm3
Medial agranular prefrontal cortex layer 6ipsiAGmL63
Anterior medial frontal cortexipsiAMFC2
Orbital cortexipsiOrC-10
Lateral orbital cortexipsiLO2
Medial orbital cortexipsiMO1
Ventral orbital cortexipsiVO2
Interpeduncular nucleusipsiIP3
Olfactory cortexipsiOcx1
Olfactory nucleiipsiONn1
Anterior olfactory nucleusipsiAON2
Anterior olfactory nucleus medial partipsiAONm-0.5
Rostral olfactory nucleusipsiONro2
Olfactory tubercleipsiTuO2
Olfactory tubercle polymorph layeripsiTuOpo2
Lateral septal nucleusipsiLS-10
Periaqueductal gray rostrocaudal extentcontraPAGroe3
Locus coeruleuscontraLC3
Intermediate reticular nucleuscontraIRt1
Pontine reticular nucleuscontraPRN3
Parabrachial nucleus dorsal partcontraPBD3
Gigantocellular reticular nucleuscontraGi1
Parvicellular reticular nucleuscontraPCRt1
Mesencephalic trigeminal nucleuscontraMe51
Principal sensory trigeminal nucleuscontraPr51
Medial vestibular nucleuscontraMVe1
Dorsal raphe nucleuscontraDR3
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL0.5
Reticular thalamic nucleuscontraRt1
Interstitial nucleus of the posterior limb of the anterior commissure medial partcontraIPACM2
Globus palliduscontraGP1
Caudate putamencontraCPu1
Anterior cingulate cortexcontraACC0.5
Cingulate cortex area 1contraCg12
Cingulate cortex area 1 layer 3contraCg1L32
Cingulate cortex area 1 layer 5contraCg1L52
Cingulate cortex area 1 layer 6contraCg1L62
Cingulate cortex area 2contraCg22
Cingulate area 2 layer 3contraCG2L32
Cingulate area 2 layer 5contraCg2L52
Cingulate cortex area 2 layer 6contraCg2L62
Prelimbic cortexcontraPrL1
Prelimbic cortex layer 3contraPrLL31
Prelimbic cortex layer 5contraPrLL51
Prelimbic cortex layer 6contraPrLL61
Infralimbic cortexcontraIL1
Infralimbic cortex layer 5contraILL51
Infralimbic cortex layer 6contraILL61
Infralimbic cortex layer 3contraILL31
Agranular insular cortexcontraAI0.5
Agranular insular cortex rostral partcontraRAIC1
Frontal pole of prefrontal cortexcontraFPFC1.5
Prefrontal cortex layer 6contraPFCL6-0.5
Lateral prefrontal cortexcontralPFC-0.5
Lateral agranular prefrontal cortexcontraAGl1
Lateral agranular prefrontal cortex layer 6contraAGlL61
Medial prefrontal cortexcontramPFC1
Medial agranular prefrontal cortexcontraAGm1
Anterior medial frontal cortexcontraAMFC1
Anterior olfactory nucleuscontraAON1
Stomach wallipsiOrgsStomWS-10

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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