University of Rostock

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Rat connectome



Primary somatosensory cortex layer 1 left


Abbreviation
S1L1
Color       
Superior regionsPrimary somatosensory cortex supragranular layers

SynonymsAbbr.Language
Primary somatosensory cortex layer 1S1L1 
Primary somatosensory cortex molecular layer Eng

SubregionsSide
Primary somatosensory cortex superficial half of the layer 1left

Output to

NameSideAbbr.WeightDetails
Inferior olive dorsal nucleusipsiIOD3
Inferior olive medial nucleusipsiIOM3
Inferior olive principal nucleusipsiIOPr3
Frontal association cortexipsiFrA0
Frontal cortex area 3ipsiFr30
Primary somatosensory cortex barrel fieldipsiS1BF0
Primary somatosensory cortex layer 1ipsiS1L1-0.5
Frontal association cortexcontraFrA0
Frontal cortex area 3contraFr30
Primary somatosensory cortexcontraS11
Primary somatosensory cortex layer 1contraS1L10
Primary somatosensory cortex periangular zone arround barrel fieldscontraS1pg1
Secondary somatosensory cortexcontraS21
Spinal cordcontraMES0

Input from

NameSideAbbr.WeightDetails
Gigantocellular reticular nucleusipsiGi2
ThalamusipsiT-0.5
Central medial thalamic nucleus caudal partipsiCMca2
Centre median nucleusipsiCeMe1.5
Parafascicular thalamic nucleusipsiPF1.5
Posterior thalamic nuclear groupipsiPo-0.5
Posterior thalamic nuclear group anterior partipsiPoA-10
Posterior thalamic nuclear group posterior partipsiPoP-10
Ventrobasal complexipsiVB2
Ventral posterolateral thalamic nucleusipsiVPL3
Ventral posteromedial thalamic nucleusipsiVPM3
Dorsomedial portion of the ventral posteromedial thalamic nucleusipsiVPMdm1
Ventromedial thalamic nucleus lateral partipsiVML1
Ventral posterolateral thalamic nucleus parvicellular partipsiVPLpc-0.5
Posterior groupipsiPTG2
Ventral medial nucleus of the thalamusipsiVMT-0.5
Frontal association cortexipsiFrA2
Frontal cortex area 2ipsiFr22
Frontal cortex area 3ipsiFr32
Lateral parietal association cortexipsiLPtA3
Lateral parietal association cortex layer 3ipsiLPtAL31
Lateral parietal association cortex layer 4ipsiLPtAL41
Lateral parietal association cortex layer 5ipsiLPtAL52
Agranular insular cortexipsiAI-0.5
Dysgranular insular cortexipsiDI-0.5
Lateral agranular prefrontal cortexipsiAGl3
Lateral agranular prefrontal cortex layer 3ipsiAGlL31
Lateral agranular prefrontal cortex layer 5ipsiAGlL51
Whiskers motor cortex layer 5ipsiWMCxL53
Whiskers motor cortex layer 6ipsiWMCxL63
Primary somatosensory cortexipsiS1-0.5
Primary somatosensory cortex barrel fieldipsiS1BF-0.5
Primary somatosensory cortex dysgranular regionipsiS1DZ-0.5
Primary somatosensory cortex layer 5ipsiS1L5-0.5
Primary somatosensory cortex layer 6ipsiS1L60
Primary somatosensory cortex layer 4ipsiS1L40
Primary somatosensory cortex layer 1ipsiS1L1-0.5
Primary somatosensory cortex layer 2ipsiS1L2-0.5
Primary somatosensory cortex layer 3ipsiS1L3-0.5
Forepaw barrel subfieldipsiFPBS1-0.5
Secondary somatosensory cortexipsiS21
Anterolateral area of subdivision 18a in lateral extrastriate cortexipsiALV2L-0.5
Lateromedial area of subdivision 18a in lateral extrastriate cortexipsiLMV2L-0.5
Anterior portion of the anterolateral part of the lateral extrastriate cortexipsiVISLaLA3
Anterior part of the medial extrastriate cortexipsiVISMA3
Ventromedial thalamic nucleuscontraVM0.5
Frontal association cortexcontraFrA2
Frontal cortex area 2contraFr21.5
Frontal cortex area 3contraFr32
Border of frontal cortex 2contraFr2B1
Primary somatosensory cortexcontraS12
Primary somatosensory cortex layer 1contraS1L10

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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