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Rat connectome



Primary somatosensory cortex layer 5 left


Abbreviation
S1L5
Color       
Superior regionsPrimary somatosensory cortex infragranular layers

SynonymsAbbr.Language
Primary somatosensory cortex layer 5S1L5 

SubregionsSide
Primary somatosensory cortex layer 5 aleft
Primary somatosensory cortex layer 5 bleft
Primary somatosensory cortex layer 5 pyramidal neuronsleft
Primary somatosensory cortex layer 5 interneuronsleft

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG3
Superior colliculusipsiSC3
Brachium of the superior colliculusipsibsc-2
Superior colliculus caudal partipsicSC-2
Superior colliculus lateral partipsiSCL3
Superior colliculus intermediate layersipsiSCi0
Superior colliculus mediolateral partipsiSCmL0
Superior colliculus rostrocaudal partipsiSCrc0
Tegmental areaipsiTGA0.5
Reticulotegmental nucleusipsiRETn0.5
Pontine nucleiipsiPn3
Deep mesencephalic nucleusipsiDpMe-0.5
Principal sensory trigeminal nucleusipsiPr53
Spinal trigeminal nucleus caudal partipsiSp5C3
Nucleus of the solitary tractipsiSol4
Dorsal motor nucleus of vagusipsi104
Arcuate nucleusipsiArc-0.5
Dorsal thalamusipsiDOR-0.5
Anterior group of the dorsal thalamusipsiATN3
Parafascicular thalamic nucleusipsiPF1.5
Posterior thalamic nuclear groupipsiPo-0.5
Posterior thalamic nuclear group dorsal partipsiPoDo2.5
Posterior thalamic nuclear group medial partipsiPoMe1
Ventrolateral thalamic nucleusipsiVL3
Ventrobasal complexipsiVB3
External nucleus of ventrobasal complexipsiEVB-0.5
Dorsomedial zone of the ventral posterolateral thalamic nucleusipsiVPLdmz-0.5
Ventral posteromedial thalamic nucleusipsiVPM1
Ventral part of the ventral posteromedial thalamic nucleusipsiVPMvL1
Ventrobasal complex posterior partipsiVBp3
Main thalamic relay nucleiipsiVBMTRN-0.5
Intralaminar nucleiipsiILN-0.5
Lateral posterior thalamic nucleusipsiLP3
Posterior groupipsiPTG3
Reticular thalamic nucleusipsiRt-0.5
Ventral medial nucleus of the thalamusipsiVMT-0.5
Zona incertaipsiZI-0.5
Caudate putamenipsiCPu3
Anterior striatumipsiAStri3
Medial striatumipsiCPum3
Central striatumipsiCPuce3
Dorsal striatumipsiCPud3
Dorsolateral striatumipsiCPudl3
Dorsolateral striatum dorsal partipsiCPudlD1
Dorsolateral striatum ventral partipsiCPudlV3
Lateral striatumipsiCPul3
Frontal association cortexipsiFrA3
Frontal cortex area 2ipsiFr2-0.5
Frontal cortex area 3ipsiFr33
Forelimb motor cortexipsiFMCx3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Primary somatosensory cortex layer 1ipsiS1L1-0.5
Primary somatosensory cortex layer 2ipsiS1L2-0.5
Primary somatosensory cortex layer 3ipsiS1L3-0.5
Primary somatosensory cortex hindlimb region middle partipsiS1HLMi1
Secondary somatosensory cortexipsiS2-0.5
Lateral geniculate complexipsiLG3
Medial geniculate nucleusipsiMG3
Pyramidal tractipsipy1
Cervical segment 1ipsiCS11
Cervical segment 2ipsiCS21
Periaqueductal graycontraPAG0
Superior colliculuscontraSC0
Brachium of the superior colliculuscontrabsc0
Superior colliculus caudal partcontracSC0
Superior colliculus lateral partcontraSCL0
Superior colliculus intermediate layerscontraSCi0
Superior colliculus mediolateral partcontraSCmL0
Superior colliculus rostrocaudal partcontraSCrc0
Pontine nucleicontraPn1
Subnucleus reticularis dorsaliscontraSRD3
Principal sensory trigeminal nucleus frontal nerve regioncontraPr5F3
Principal sensory trigeminal nucleus lingual partcontraPr5L3
Lateral part of the infraorbital part of the principal sensory trigeminal nucleus maxillary partcontraPr5MiL3
Medial part of the infraorbital part of the principal sensory trigeminal nucleus maxillary partcontraPr5MiM3
Principal sensory trigeminal nucleus mental partcontraPr5Me3
Spinal trigeminal nucleuscontraSp5nc-0.5
Spinal trigeminal nucleus caudal partcontraSp5C3
Nucleus of the solitary tractcontraSol3
Dorsal motor nucleus of vaguscontra103
Cuneate nucleuscontraCu3
Ventro anterior thalamic nucleuscontraVA0.5
Dorsal funiculuscontradfu-2
Caudate putamencontraCPu1
Medial striatumcontraCPum3
Central striatumcontraCPuce1
Dorsal striatumcontraCPud1
Dorsolateral striatumcontraCPudl1
Dorsolateral striatum dorsal partcontraCPudlD0.5
Dorsolateral striatum ventral partcontraCPudlV1
Lateral striatumcontraCPul3
Frontal association cortexcontraFrA3
Frontal cortex area 3contraFr33
Lateral parietal association cortexcontraLPtA1.5
Lateral agranular prefrontal cortexcontraAGl-0.5
Primary somatosensory cortexcontraS13
Primary somatosensory cortex layer 5contraS1L54
Primary somatosensory cortex forelimb region layer 5bcontraS1FL5b3
Primary somatosensory cortex forelimb region forepawcontraS1FP3
Primary somatosensory cortex forelimb region forepaw layer 5acontraS1FPL5a3
Primary somatosensory cortex forelimb region forepaw layer 5bcontraS1FPL5b3
Primary somatosensory cortex forelimb wrist region layer 5bcontraS1FLWL5b3
Primary somatosensory cortex hindlimb region middle partcontraS1HLMi0
Primary somatosensory cortex periangular zone arround barrel fieldscontraS1pg3
Secondary somatosensory cortexcontraS23
Spinal cordcontraMES3
Cervical segmentscontraCSeg3
Cervical segment 1contraCS11
Cervical segment 2contraCS23
Spinal cord layer 5 C4contraSCL5C4-0.5
Spinal cord layer 3 C4contraSCL3C4-0.5
Spinal cord layer 4 C4contraSCL4C4-0.5
Spinal cord layer 1 C4contraSCL1C4-0.5
Spinal cord layer 2 C4contraSCL2C4-0.5
Spinal cord layer 7 C4contraSCL7C4-0.5
Spinal cord layer 5 C5contraSCL5C5-0.5
Spinal cord layer 3 C5contraSCL3C5-0.5
Spinal cord layer 4 C5contraSCL4C5-0.5
Spinal cord layer 1 C5contraSCL1C5-0.5
Spinal cord layer 2 C5contraSCL2C5-0.5
Spinal cord layer 7 C5contraSCL7C5-0.5
Spinal cord layer 5 L3contraSCL5L3-0.5
Spinal cord layer 3 L3contraSCL3L3-0.5
Spinal cord layer 4 L3contraSCL4L3-0.5
Spinal cord layer 1 L3contraSCL1L3-0.5
Spinal cord layer 2 L3contraSCL2L3-0.5
Spinal cord layer 7 L3contraSCL7L3-0.5
Spinal cord layer 5 L4contraSCL5L4-0.5
Spinal cord layer 3 L4contraSCL3L4-0.5
Spinal cord layer 4 L4contraSCL4L4-0.5
Spinal cord layer 1 L4contraSCL1L4-0.5
Spinal cord layer 2 L4contraSCL2L4-0.5
Spinal cord layer 7 L4contraSCL7L4-0.5
Sublingual glandipsiOrgSubLGL-0.5
Submandibular glandipsiOrgsSubg1
Sublingual glandcontraOrgSubLGL1
Submandibular glandcontraOrgsSubg1
KidneycontraOrgsKid1

Input from

NameSideAbbr.WeightDetails
Gigantocellular reticular nucleusipsiGi2
Central medial thalamic nucleus caudal partipsiCMca2
Centre median nucleusipsiCeMe1.5
Centrolateral thalamic nucleusipsiCL-0.5
Parafascicular thalamic nucleusipsiPF1.5
Rhomboid thalamic nucleusipsiRh2
Posterior thalamic nuclear groupipsiPo-0.5
Posterior thalamic nuclear group anterior partipsiPoA-10
Posterior thalamic nuclear group posterior partipsiPoP-10
Ventrolateral thalamic nucleusipsiVL-0.5
Ventrobasal complexipsiVB1
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Ventral posterolateral thalamic nucleus parvicellular partipsiVPLpc-0.5
Intralaminar nucleiipsiILN-0.5
Lateral posterior thalamic nucleusipsiLP0
Frontal association cortexipsiFrA3
Frontal cortex area 2ipsiFr21
Frontal cortex area 3ipsiFr33
Border of frontal cortex 2ipsiFr2B3
Gustatory dysgranular insular cortex layer 5ipsiDIgL52
Gustatory dysgranular insular cortex layer 6ipsiDIgL62
Whiskers motor cortex layer 5ipsiWMCxL53
Whiskers motor cortex layer 6ipsiWMCxL6-2
Primary somatosensory cortex dysgranular regionipsiS1DZ-0.5
Primary somatosensory cortex layer 5 a slender untufted pyramidal neuronipsiS1L5asupy-0.5
Primary somatosensory cortex layer 5 a thick tufted pyramidal neuronipsiS1L5attpy-0.5
Primary somatosensory cortex layer 5 b slender untufted pyramidal neuronipsiS1L5bsupy-0.5
Primary somatosensory cortex layer 5 b thick tufted pyramidal neuronipsiS1L5bttpy-0.5
Primary somatosensory cortex layer 2 pyramidal neuronsipsiS1L2py-0.5
Primary somatosensory cortex layer 3ipsiS1L3-0.5
Primary somatosensory cortex layer 3 pyramidal neuronsipsiS1L3py-0.5
Primary somatosensory cortex hindlimb region lateral partipsiS1HLL3
Primary somatosensory cortex hindlimb region medial partipsiS1HLMe2
Secondary somatosensory cortexipsiS20.5
Anterolateral area of subdivision 18a in lateral extrastriate cortexipsiALV2L-0.5
Lateromedial area of subdivision 18a in lateral extrastriate cortexipsiLMV2L-0.5
Anterior portion of the anterolateral part of the lateral extrastriate cortexipsiVISLaLA3
Anterior part of the medial extrastriate cortexipsiVISMA3
Dorsal geniculate nucleus lateral partipsiDLGl0
Frontal association cortexcontraFrA3
Frontal cortex area 2contraFr23
Frontal cortex area 3contraFr33
Border of frontal cortex 2contraFr2B3
Lateral parietal association cortexcontraLPtA1.5
Primary somatosensory cortexcontraS13
Primary somatosensory cortex layer 5contraS1L54
Primary somatosensory cortex layer 6contraS1L6-0.5
Primary somatosensory cortex layer 4contraS1L4-0.5
Primary somatosensory cortex layer 2contraS1L2-0.5
Primary somatosensory cortex layer 3contraS1L3-0.5
Primary somatosensory cortex forelimb region forepawcontraS1FP-0.5
Primary somatosensory cortex hindlimb region lateral partcontraS1HLL0.5
Primary somatosensory cortex hindlimb region medial partcontraS1HLMe0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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