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Rat connectome



Central medial thalamic nucleus caudal part left


Abbreviation
CMca
Color       
Superior regionsCentral medial thalamic nucleus

SynonymsAbbr.Language
Central medial thalamic nucleus caudal partCMca 
Caudal part of central medial thalamic nucleus  
Caudal portion of central medial thalamic nucleus Eng

Output to

NameSideAbbr.WeightDetails
Substantia innominataipsiSI1.5
HypothalamusipsiHYPO0.5
ThalamusipsiT0.5
Rhomboid thalamic nucleusipsiRh2
Paraventricular thalamic nucleus ventral partipsiPVV2
Reuniens thalamic nucleusipsiRe2
Ventromedial thalamic nucleusipsiVM2
Reticular thalamic nucleusipsiRt2
Anterior forceps of the lateral edge of the corpus callosumipsiccaf-2
Basal nucleusipsiBnc-0.5
Basolateral amygdaloid nucleusipsiBL4
Basomedial amygdaloid nucleusipsiBM3
Basomedial nucleus lateral partipsiBML4
Lateral amygdaloid nucleusipsiLA4
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus shellipsiCeSh4
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC-0.5
Interstitial nucleus of the posterior limb of the anterior commissure caudolateral partipsiIPACcl3
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM4
Interstitial nucleus of the posterior limb of the anterior commissure rostral partipsiIPACR3
Anterior amygdaloid areaipsiAA3
Cortical amygdaloid nucleusipsiCAn-0.5
Medial amygdaloid nucleusipsiMe-0.5
ClaustrumipsiCl2
Claustrum deep layersipsiCldL2
Caudal globus pallidus lateral partipsiGPcL3
Accumbens nucleusipsiAc1.5
Accumbens nucleus coreipsiAcbC-0.5
Accumbens nucleus rostrolateral partipsiAcRL3
Accumbens nucleus shellipsiAcbSh-0.5
Anterior accumbensipsiAcbA0.5
Rostral part of the dorsolateral accumbensipsiAcbRDL3
Anterior striatumipsiAStri0.5
Caudal striatumipsiCPuc1
Caudate putamen bordering globus pallidusipsiCPugp1
Dorsal striatum ventral partipsiCPudV3
Dorsal striatum ventromedial partipsiCPudvm3
Rostrocaudal part of the ventral caudate putamenipsiCPuvrc3
Ventrolateral striatumipsiCPuvl2
Ventromedial caudate putamen bordering globus pallidusipsiCPuvmgp3
Lateral striatumipsiCPul2
Fundus of the striatum rostrolateral partipsiFSrl1
Entorhinal cortexipsiEnt1
Lateral entorhinal cortexipsiLEnt1
Piriform cortexipsiPir1
Postpiriform transition areaipsiTR1
Cingulate cortexipsiCg0
Anterior cingulate cortexipsiACC3
Prelimbic cortexipsiPrL3
Medial precentral prelimbic cortexipsiMPPrL3
Infralimbic cortexipsiIL3
Insular cortexipsiICX3
Agranular insular cortex dorsal partipsiAID-0.5
Agranular insular cortex dorsal part rostral subdivisionipsiAIDr2
Lateral part of the dorsal agranular insular cortex layer 1ipsiAILDL13
Lateral part of the dorsal agranular insular cortex layer 2ipsiAILDL22
Lateral part of the dorsal agranular insular cortex layer 3ipsiAILDL33
Lateral part of the dorsal agranular insular cortex layer 4ipsiAILDL42
Lateral part of the dorsal agranular insular cortex layer 5ipsiAILDL52
Lateral part of the dorsal agranular insular cortex layer 6ipsiAILDL62
Agranular insular cortex layer 1ipsiAIL12
Agranular insular cortex posterior partipsiAIP-0.5
Agranular insular cortex posterior part caudal portionipsiAIPc2
Agranular insular cortex posterior part layer 1ipsiAIPL12
Agranular insular cortex posterior part layer 2ipsiAIPL22
Agranular insular cortex posterior part layer 3ipsiAIPL33
Agranular insular cortex posterior part layer 4ipsiAIPL42
Agranular insular cortex posterior part layer 5ipsiAIPL53
Agranular insular cortex posterior part layer 6ipsiAIPL63
Gustatory dysgranular insular cortex dorsal part layer 1ipsiDIgDL13
Gustatory dysgranular insular cortex dorsal part layer 2ipsiDIgDL22
Gustatory dysgranular insular cortex dorsal part layer 3ipsiDIgDL33
Gustatory dysgranular insular cortex dorsal part layer 4ipsiDIgDL42
Gustatory dysgranular insular cortex dorsal part layer 5ipsiDIgDL52
Gustatory dysgranular insular cortex dorsal part layer 6ipsiDIgDL62
Gustatory dysgranular insular cortex layer 5ipsiDIgL52
Gustatory dysgranular insular cortex layer 1ipsiDIgL12
Gustatory dysgranular insular cortex layer 3ipsiDIgL32
Gustatory dysgranular insular cortex rostral partipsiDIgR2
Visceral dysgranular insular cortexipsiDIv3
Visceral dysgranular insular cortex layer 1ipsiDIvL12
Visceral dysgranular insular cortex layer 3ipsiDIvL32
Visceral dysgranular insular cortex layer 5ipsiDIvL52
Granular insular cortexipsiGI-0.5
Perirhinal cortexipsiA353
Perirhinal cortex inner layersipsiPRhiL3
Ectorhinal cortexipsiA361
Anterior prefrontal cortex lateralipsiAPFCL3
Anterior prefrontal cortex middle partipsiAPFCm3
Lateral agranular prefrontal cortexipsiAGl3
Lateral agranular prefrontal cortex layer 1ipsiAGlL12
Lateral agranular prefrontal cortex layer 3ipsiAGlL32
Lateral agranular prefrontal cortex deep layersipsiAGldL3
Lateral agranular prefrontal cortex layer 5ipsiAGlL52
Medial prefrontal cortexipsimPFC0.5
Medial agranular prefrontal cortexipsiAGm0.5
Primary somatosensory cortexipsiS11
Primary somatosensory cortex dorsal partipsiS1D1.5
Primary somatosensory cortex layer 5ipsiS1L52
Primary somatosensory cortex layer 1ipsiS1L12
Primary somatosensory cortex layer 3ipsiS1L32
Secondary somatosensory cortexipsiS21
Prefrontal cortex lateral two thirdsipsiPFCLtt3
Dorsolateral orbital cortexipsiDLO-0.5
Dorsolateral orbital cortex lateral part layer 1ipsiDLaOLL13
Dorsolateral orbital cortex lateral part layer 2ipsiDLaOLL22
Dorsolateral orbital cortex lateral part layer 3ipsiDLaOLL33
Dorsolateral orbital cortex deep layersipsiDLOdL3
Lateral orbital cortexipsiLO3
Lateral orbital cortex lateral part layer 1ipsiLOLL13
Lateral orbital cortex lateral part layer 2ipsiLOLL22
Lateral orbital cortex lateral part layer 3ipsiLOLL33
Lateral orbital cortex deep layersipsiLOLad3
Ventrolateral orbital area deep layersipsiVLOd3
Olfactory tubercleipsiTuO2
Olfactory tubercle anterior partipsiTuOA0.5

Input from

NameSideAbbr.WeightDetails
Parabrachial nucleus ventrolateral partipsiPBveLa2.5
Parasubthalamic nucleusipsiPSTh1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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