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Rat connectome



Lateral agranular prefrontal cortex layer 5 left


Abbreviation
AGlL5
Color       
Superior regionsLateral agranular prefrontal cortex deep layers

SynonymsAbbr.Language
Lateral agranular prefrontal cortex layer 5AGlL5Eng

SubregionsSide
Lateral agranular prefrontal cortex layer 5aleft
Lateral agranular prefrontal cortex layer 5bleft
Lateral agranular prefrontal cortex layer 5cleft
Lateral agranular prefrontal cortex layer 5 pyramid neuronsleft
Lateral agranular prefrontal cortex layer 5 interneuronsleft

Output to

NameSideAbbr.WeightDetails
Tegmental areaipsiTGA1
Pontine grayipsiPG-0.5
Reticulotegmental nucleusipsiRETn1
Pontine nucleiipsiPn3
Parabrachial nucleusipsiPB3
Nucleus of the solitary tractipsiSol4
Dorsal motor nucleus of vagusipsi104
Dorsal column nucleiipsiDCN3
ThalamusipsiT2
Anterior group of the dorsal thalamusipsiATN3
Gelatinosus thalamic nucleusipsiG3
Ventrolateral thalamic nucleusipsiVL3
Ventral posterior thalamic complex medial partipsiVPTm3
Ventrobasal complexipsiVB3
Ventromedial thalamic nucleusipsiVM3
Parafascicular centre-median complexipsiPFCM3
Lateral posterior thalamic nucleusipsiLP3
Reticular thalamic nucleusipsiRt3
Anterior part of the claustrumipsiACl1
Medial part of claustrumipsiMCl0.5
Caudate putamenipsiCPu3
Anterior striatumipsiAStri3
Dorsal striatumipsiCPud3
Dorsolateral striatum dorsal partipsiCPudlD1
Dorsolateral striatum ventral partipsiCPudlV3
Rostral striatumipsiCPur3
Lateral striatumipsiCPul3
Subthalamic nucleus ellipsoidal neuronsipsiSTheN-10
Medial prefrontal cortexipsimPFC2
Primary somatosensory cortex barrel fieldipsiS1BF1.5
Primary somatosensory cortex upper lip regionipsiS1ULp1.5
Anterior part of head region of the primary somatosensory cortexipsiS1aFR3
Lateral anterior part of head region of the primary somatosensory cortexipsiS1LaFR3
Primary somatosensory cortex layer 1ipsiS1L11
Primary somatosensory cortex forelimb region lateral partipsiS1FLL3
Primary somatosensory cortex forelimb region forepawipsiS1FP3
Primary somatosensory cortex forelimb region posterior partipsiS1FLPo3
Primary somatosensory cortex hindlimb region medial partipsiS1HLMe3
Primary somatosensory cortex foot regionipsiS1HPfr3
Primary somatosensory cortex hindlimb region posterior partipsiS1HLPo3
Proximal body region of the primary somatosensory cortexipsiS1PBR3
Ventral orbital cortexipsiVO-0.5
Ventrolateral orbital areaipsiVLO-0.5
Lateral geniculate complexipsiLG3
Dorsal root gangliaipsiDRG3
Pyramidal tractipsipy1
Cervical segment 1ipsiCS11
Cervical segment 2ipsiCS21
Cervical segment 5ipsiCS53
Cervical segment 6ipsiCS63
Thoracal segment 1ipsiT13
Thoracal segment 2ipsiT23
Thoracal segment 3ipsiT33
Thoracal segment 4ipsiT43
Thoracal segment 5ipsiT53
Thoracal segment 6ipsiT63
Spinal cord border between layer 10 and layer 7 L3ipsiSCLb10L7L32
Spinal cord border between layer 10 and layer 7 L4ipsiSCLb10L7L42
Pontine nucleicontraPn1.5
Subnucleus reticularis dorsaliscontraSRD3
Nucleus of the solitary tractcontraSol3
Dorsal motor nucleus of vaguscontra103
Dorsal column nucleicontraDCN3
Cuneate nucleuscontraCu3
Dorsal funiculuscontradfu-2
Anterior part of the claustrumcontraACl0.5
Medial part of claustrumcontraMCl0.5
Caudate putamencontraCPu3
Anterior striatumcontraAStri-0.5
Dorsolateral striatum dorsal partcontraCPudlD0.5
Dorsolateral striatum ventral partcontraCPudlV1
Forelimb motor cortexcontraFMCx3
Primary somatosensory cortexcontraS13
Primary somatosensory cortex periangular zone arround barrel fieldscontraS1pg3
Spinal cordcontraMES-0.5
Pyramidal tractcontrapy-2
Cervical segmentscontraCSeg3
Cervical segment 1contraCS11
Intermediomedial cell column C1contraIMMC13
Dorsal horn C1contraDHC13
Cervical segment 2contraCS23
Dorsal horn C2contraDHC23
Cervical segment 3contraCS3-0.5
Cervical segment 4contraCS4-0.5
Spinal cord layer 5 C4contraSCL5C4-0.5
Spinal cord layer 3 C4contraSCL3C4-0.5
Spinal cord layer 4 C4contraSCL4C4-0.5
Spinal cord layer 1 C4contraSCL1C4-0.5
Spinal cord layer 2 C4contraSCL2C4-0.5
Spinal cord layer 7 C4contraSCL7C4-0.5
Cervical segment 5contraCS53
Spinal cord layer 5 C5contraSCL5C5-0.5
Spinal cord layer 3 C5contraSCL3C5-0.5
Spinal cord layer 4 C5contraSCL4C5-0.5
Spinal cord layer 1 C5contraSCL1C5-0.5
Spinal cord layer 2 C5contraSCL2C5-0.5
Spinal cord layer 7 C5contraSCL7C5-0.5
Cervical segment 6contraCS63
Cervical segment 7contraCS73
Cervical segment 8contraCS83
Cervical enlargementcontraCSegE-0.5
Corticospinal tract of the cervical enlargementcontraCSegEcst-2
Thoracal segment 1contraT13
Thoracal segment 9contraT9-0.5
Thoracal segment 10contraT10-0.5
Lumbar enlargementcontraLSegE-0.5
Spinal cord layer 5 L3contraSCL5L3-0.5
Spinal cord layer 3 L3contraSCL3L3-0.5
Spinal cord layer 4 L3contraSCL4L3-0.5
Spinal cord layer 1 L3contraSCL1L3-0.5
Spinal cord layer 2 L3contraSCL2L3-0.5
Spinal cord layer 7 L3contraSCL7L3-0.5
Spinal cord layer 5 L4contraSCL5L4-0.5
Spinal cord layer 3 L4contraSCL3L4-0.5
Spinal cord layer 4 L4contraSCL4L4-0.5
Spinal cord layer 1 L4contraSCL1L4-0.5
Spinal cord layer 2 L4contraSCL2L4-0.5
Spinal cord layer 7 L4contraSCL7L4-0.5
Sacral segment 1contraSa1-0.5
Sacral segment 2contraSa2-0.5
Sacral segment 3contraSa3-0.5
Sacral segment 4contraSa4-0.5
Coccygeal segment 1contraCo1-0.5
Coccygeal segment 2contraCo2-0.5
FootpadcontraOrgHPSfp-10
KidneycontraOrgsKid4

Input from

NameSideAbbr.WeightDetails
ThalamusipsiT3
Central medial thalamic nucleusipsiCM-0.5
Central medial thalamic nucleus caudal partipsiCMca2
Centre median nucleusipsiCeMe1.5
Centrolateral thalamic nucleusipsiCL-0.5
Paracentral thalamic nucleusipsiPC-0.5
Parafascicular thalamic nucleusipsiPF1.5
Rhomboid thalamic nucleusipsiRh1
Posterior thalamic nuclear groupipsiPo-0.5
Ventro anterior thalamic nucleusipsiVA-0.5
Ventrolateral thalamic nucleusipsiVL2
Ventral posteromedial thalamic nucleusipsiVPM1
Lateral posterior thalamic nucleus mediorostral part lateral regionipsiLPMRl3
Laterodorsal thalamic nucleus ventrolateral part medial regionipsiLDVLm3
Anterior cingulate cortexipsiACC-0.5
Prelimbic cortexipsiPrL-0.5
Insular cortexipsiICX-0.5
Lateral agranular prefrontal cortex layer 3ipsiAGlL3-0.5
Primary somatosensory cortexipsiS1-0.5
Primary somatosensory cortex barrel fieldipsiS1BF1.5
Primary somatosensory cortex upper lip regionipsiS1ULp1.5
Anterior part of head region of the primary somatosensory cortexipsiS1aFR3
Lateral anterior part of head region of the primary somatosensory cortexipsiS1LaFR3
Primary somatosensory cortex forelimb region lateral partipsiS1FLL3
Primary somatosensory cortex forelimb region posterior partipsiS1FLPo3
Primary somatosensory cortex hindlimb region medial partipsiS1HLMe3
Primary somatosensory cortex hindlimb region posterior partipsiS1HLPo3
Proximal body region of the primary somatosensory cortexipsiS1PBR3
Rostral forelimb area of SmithipsiRFA3
Insular cortexcontraICX-0.5
Primary somatosensory cortexcontraS1-0.5
Spinal cord layer 9 C7contraSCL9C7-0.5
Spinal cord layer 9 C8contraSCL9C8-0.5
Spinal cord layer 9 L4contraSCL9L4-0.5
Spinal cord layer 9 L5contraSCL9L5-0.5
Spinal cord layer 9 L6contraSCL9L6-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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