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Rat connectome



Primary visual cortex monocular area left


Abbreviation
V1M
Color       
Superior regionsVisual association cortex

SynonymsAbbr.Language
Primary visual cortex monocular areaV1MEng
 Oc1M 
Primary visual cortex medial partV1meEng

SubregionsSide
Primary visual cortex monocular area layersleft
Primary visual cortex monocular area medial partleft
Anteroposterior division of the medial primary visual cortexleft
Medial two-thirds of the primary visual cortextleft
Medial primary visual cortex between the caudal and rostral arealeft
Rostral part of the medial primary visual cortexleft
Caudal part of the medial primary visual cortexleft
Primary visual cortex medial part layersleft
Medial border of area 17left

Output to

NameSideAbbr.WeightDetails
Superior colliculusipsiSC2
Brachium of the superior colliculusipsibsc-2
Superior colliculus caudal partipsicSC-2
Superior colliculus dorsal part layer 1ipsiSCDoL11
Superior colliculus dorsal part layer 2ipsiSCDoL23
Superior colliculus dorsal part layer 3ipsiSCDoL33
Superior colliculus dorsomedial partipsiSCDM-2
Superior colliculus superficial layersipsiSCs3
Optic nerve layer of the superior colliculusipsiOp-2
Superficial layers of the superior colliculus mediolateral partipsiSCsmL0.5
Pontine nuclei rostrolateral partipsiBPNrL-0.5
Reticular thalamic nucleus lateral partipsiRtL2
Caudate putamenipsiCPu1
Primary visual cortexipsiV1-0.5
Primary visual cortex layer 5ipsiV1L5-2
Primary visual cortex layer 6ipsiV1L6-2
Primary visual cortex monocular areaipsiV1M-0.5
Anterior extrastriate cortexipsiVISA-0.5
Medial part of the anterolateral extrastriate cortexipsiMALExCx-0.5
Lower half of the medial part of the anterolateral extrastriate cortexipsiLhMALExCx2
Lower half of the anteromedial extrastriate cortexipsiLhAMExCx2
Lateral extrastriate cortexipsiVISxL3
Lateral part of the anterolateral part of the lateral extrastriate cortexipsiVISLaLL3
Far lateral extrastriate cortexipsiVISFL2
Laterolateral extrastriate cortex layer 2ipsiVISLL23
Laterolateral extrastriate cortex layer 3ipsiVISLL33
Laterolateral extrastriate cortex layer 4ipsiVISLL43
Laterolateral extrastriate cortex lower part of layer 5ipsiVISLLpL52.5
Laterolateral extrastriate cortex upper half of layer 6ipsiVISLuhL62.5
Central portion of the lateromedial part of the lateral extrastriate cortexipsiVISLLMc3
Lateral portion of the lateromedial part of the lateral extrastriate cortexipsiVISLLML3
Rostral lateral extrastriate cortexipsiVISL-r3
Central portion of the anterolateral cortical visual areaipsiVISalc3
Lateral portion of the anterolateral cortical visual areaipsiVISalL3
Medial part of the lateromedial extrastriate cortexipsiMLMExCx-0.5
Medial part of the lateromedial extrastriate cortex layer 2ipsiMLMExCxL23
Medial part of the lateromedial extrastriate cortex layer 3ipsiMLMExCxL33
Medial part of the lateromedial extrastriate cortex layer 4ipsiMLMExCxL43
Medial part of the lateromedial extrastriate cortex lower part of layer 5ipsiMLMExCxLpL52.5
Medial part of the lateromedial extrastriate cortex upper half of layer 6ipsiUhMLMExCxL62.5
Medial extrastriate cortexipsiVISM3
Posterior extrastriate cortex layer 2ipsiPExCxL2-1
Posterior extrastriate cortex layer 3ipsiPExCxL3-1
Posterior extrastriate cortex layer 4ipsiPExCxL4-1
Posterior extrastriate cortex layer 5ipsiPExCxL5-1
Posterior extrastriate cortex layer 6ipsiPExCxL6-1
Posterior part of the posterior extrastriate cortexipsiPPExCx3
Posterolateral extrastriate cortex layer 2ipsiExCxPLL23
Posterolateral extrastriate cortex layer 3ipsiExCxPLL33
Posterolateral extrastriate cortex layer 4ipsiExCxPLL43
Posterolateral extrastriate cortex layer 5ipsiExCxPLL52.5
Posterolateral extrastriate cortex upper half of layer 6ipsiExCxPLuhL62.5
Commissural systemsipsicos-2
Dorsal geniculate nucleus lateral part lateral aspectipsiDLGLL2
Superior colliculuscontraSC0
Caudate putamencontraCPu0
Primary visual cortex lateral partcontraV1La-1
Dorsal part of the lateral secondary visual cortexcontraV2LD-1
Primary visual cortex monocular areacontraV1M0

Input from

NameSideAbbr.WeightDetails
Superior colliculusipsiSC2
Endopiriform systemipsiEnN3
ThalamusipsiT-0.5
Dorsal part of the lateral geniculate complexipsiLGd3
Ventral part of the lateral geniculate complexipsiLGv3
ClaustrumipsiCl3
Limbic regionsipsiLR-0.5
Frontal association cortexipsiFrA3
Primary visual cortexipsiV13
Primary visual cortex lateral partipsiV1La-0.5
Primary visual cortex layer 5ipsiV1L5-2
Primary visual cortex layer 5 cipsiV1L5c3
Primary visual cortex layer 6ipsiV1L6-2
Lower part of primary visual cortex layer 6 upper partipsiV1L6uL3
Secondary visual cortex lateral areaipsiV2L3
Primary visual cortex monocular areaipsiV1M-0.5
Primary visual cortex medial part layer 6ipsiV1meL63
Medial part of the anterolateral extrastriate cortexipsiMALExCx-0.5
Lower half of the medial part of the anterolateral extrastriate cortexipsiLhMALExCx1
Lower half of the anteromedial extrastriate cortexipsiLhAMExCx1
Laterolateral extrastriate cortexipsiVISLL3
Laterolateral extrastriate cortex layer 2ipsiVISLL22
Laterolateral extrastriate cortex layer 3ipsiVISLL32
Laterolateral extrastriate cortex layer 4ipsiVISLL42
Laterolateral extrastriate cortex layer 5ipsiVISLL52
Laterolateral extrastriate cortex upper half of layer 6ipsiVISLuhL62
Lateromedial extrastriate cortexipsiLMExCx3
Medial part of the lateromedial extrastriate cortexipsiMLMExCx-0.5
Medial part of the lateromedial extrastriate cortex layer 2ipsiMLMExCxL22
Medial part of the lateromedial extrastriate cortex layer 3ipsiMLMExCxL32
Medial part of the lateromedial extrastriate cortex layer 4ipsiMLMExCxL42
Medial part of the lateromedial extrastriate cortex layer 5ipsiMLMExCxL52
Medial part of the lateromedial extrastriate cortex upper half of layer 6ipsiUhMLMExCxL62
Posterior extrastriate cortex layer 2ipsiPExCxL2-1
Posterior extrastriate cortex layer 3ipsiPExCxL3-1
Posterior extrastriate cortex layer 4ipsiPExCxL4-1
Posterior extrastriate cortex layer 5ipsiPExCxL5-1
Posterior extrastriate cortex layer 6ipsiPExCxL6-1
Posterolateral extrastriate cortex layer 2ipsiExCxPLL22
Posterolateral extrastriate cortex layer 3ipsiExCxPLL32
Posterolateral extrastriate cortex layer 4ipsiExCxPLL42
Posterolateral extrastriate cortex layer 5ipsiExCxPLL52
Posterolateral extrastriate cortex upper half of layer 6ipsiExCxPLuhL62
Commissural systemsipsicos-2
Geniculate bodyipsiGB3
Dorsal geniculate nucleus lateral part lateral aspectipsiDLGLL-0.5
Ventromedial margin of the lateral geniculate nucleusipsiVMmLG3
Lateral geniculate body lateral partipsiLGL3
Ventrolateral part of the lateral geniculate nucleusipsiVLLG1
Medial geniculate nucleusipsiMG3
Ventral part of the lateral geniculate complexcontraLGv2
Temporal association cortex 1contraTeA0
Visual regionscontraVR1
Area 17 area 18a border regioncontraVR1B2a3
Primary visual cortex lateral partcontraV1La0
Primary visual cortex monocular areacontraV1M0
Geniculate bodycontraGB2
Ventromedial margin of the lateral geniculate nucleuscontraVMmLG2
Lateral geniculate body lateral partcontraLGL2
Ventrolateral part of the lateral geniculate nucleuscontraVLLG0.5
Medial geniculate nucleuscontraMG2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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