University of Rostock

Department of Anatomy

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Rat connectome



Spinal cord layer 9 S1 left


Abbreviation
SCL9S1
Color       
Superior regionsVentral horn S1

SynonymsAbbr.Language
Spinal cord layer 9 S1SCL9S1Eng

Output to

NameSideAbbr.WeightDetails
Dorsal periaqueductal grayipsiDPAG0.5
Lateral periaqueductal grayipsiLPAG1
Paramedian lobuleipsiPM2
Anterior lobeipsiAnL2
Caudal part of cerebellumipsiCERCca2
Gigantocellular reticular nucleusipsiGi-0.5
Nucleus of the solitary tract medial partipsiSolM-0.5
Raphe pallidus nucleusipsiRPa1
Vasodepressor part of caudal midline medulla oblongataipsiCMeObmVd1.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Lateral group of the dorsal thalamusipsiLAT0
Medial thalamic zoneipsiMTZ0
Ventral horn C1ipsiVHC10
Ventral horn C2ipsiVHC20
Ventral horn C3ipsiVHC30
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Dorsal periaqueductal graycontraDPAG1
Lateral periaqueductal graycontraLPAG1
Paramedian lobulecontraPM2
Anterior lobecontraAnL2
Caudal part of cerebellumcontraCERCca2
Gigantocellular reticular nucleuscontraGi-0.5
Raphe pallidus nucleuscontraRPa1
Lateral paragigantocellular nucleuscontraLPGi-0.5
Lateral group of the dorsal thalamuscontraLAT0
Medial thalamic zonecontraMTZ0
Ventral horn C1contraVHC10.5
Ventral horn C2contraVHC20.5
Ventral horn C3contraVHC30.5
Ventromedial gray substance at the level of the lumbal segment 4contraL4vmg3
Common peronal nerveipsicperonal-2
Sciatic nerveipsisci3
Tibial nerveipsitibial-2
StomachipsiOrgsStomS-1
Tibialis anterior muscleipsiMuscTA-0.5
Gastrocnemius muscleipsiMuscGC3
Medial gastrocnemius muscleipsiMuscMGC3
Soleus muscleipsiMuscSo-0.5
Ischiocavernosus muscleipsiMuscicav-10
Pubococcygeus muscleipsiMuscPuboC3
Extensor caudalis medialis muscleipsiMuscExCaMe-0.5
Medial gastrocnemius musclecontraMuscMGC0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Lateral part of pontine central grayipsiCGPl-0.5
Laterodorsal tegmental nucleusipsiLDTg1
Dorsal tegmental nucleus lateral partipsiDLTN2
A5 noradrenaline cellsipsiA52
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca3
Medial reticular formationipsiRFm-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Pontine reticular nucleusipsiPRN3
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus oral partipsiPnO2
Pontine reticular nucleus oral part caudal partipsiPnOc2.5
Pontine reticular nucleus oral part dorsolateral partipsiPnODL2.5
Pontine reticular nucleus oral part lateral partipsiPnOL2.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Pontine reticular nucleus caudal part ventrolateral partipsiPNCvL2.5
Cuneiforme nucleusipsiCnF2.5
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus dorsal partipsiGidp3
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Gigantocellular reticular nucleus rostral partipsiGiRo-0.5
Lateral reticular nucleusipsiLRt1
Lateral reticular nucleus rostral partipsiLRtr2
Medial subnucleus reticularis ventralis caudal partipsiMSRVc1
Medial subnucleus reticularis ventralis rostral partipsiMSRVr1
Medullary reticular nucleus lateral partipsiMdL1
Subcoeruleus nucleusipsiSubC3
Spinal trigeminal nucleus interpolar partipsiSp5I2
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb2
Raphe pallidus nucleusipsiRPa2
Lateral paragigantocellular nucleusipsiLPGi-0.5
Retroambiguus nucleusipsiRAmb1
Rostral part of the ventromedial medulla oblongataipsiRMeObvm1
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleusipsiPa0.5
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regions layer 5ipsiSMRL53
Dorsal root ganglion L1ipsiDRGL10
Dorsal root ganglion L2ipsiDRGL20
Dorsal root ganglion L3ipsiDRGL30
Dorsal root ganglion L4ipsiDRGL40
Dorsal root ganglion L5ipsiDRGL50
Dorsal root ganglion L6ipsiDRGL60
Dorsal root ganglion S1ipsiDRGS12
Locus coeruleuscontraLC0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Medial reticular formationcontraRFm-0.5
Pontine reticular nucleus oral partcontraPnO0.5
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Somatomotoric regions layer 5contraSMRL53
Dorsal root ganglion S1contraDRGS12
Gastrocnemius muscleipsiMuscGC-0.5
Extensor caudalis medialis muscleipsiMuscExCaMe3
Musculus extensor caudae lateralisipsiMuscExtLat2
Musculus abductor caudae dorsalisipsiMuscAbdCaDo3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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