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Rat connectome



Zona incerta rostromedial part left


Abbreviation
ZIrm
Color       
Superior regionsZona incerta

SynonymsAbbr.Language
Zona incerta rostromedial partZIrm 
Rostromedial part of zona incerta Eng
Rostromedial region of zona incerta Eng

Output to

NameSideAbbr.WeightDetails
Medial aspect of the caudal peduncularpontine nucleusipsiPPNMCa1
Medial aspect of the rostral peduncularpontine nucleusipsiPPNMR2.5
Pedunculopontine tegmental nucleus caudal partipsiPPTgC3
Pedunculopontine tegmental nucleus rostral partipsiPPTgR3
Dorsal midbrainipsiDMEC-0.5
Median eminenceipsiME-0.5
Diagonal band of BrocaipsiDBB2
Medial septal nucleusipsiMS2
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular thalamic nucleusipsiPV2
Posterior lobe of pituitaryipsiPPit-0.5
Cingulate cortex area 1 dorsal partipsiCg1D-0.5
Motoric regionsipsiM0
Area X C1ipsiSCL10C10
Spinal cord layer 5 C1ipsiSCL5C10
Spinal cord layer 6 C1ipsiSCL6C10
Spinal cord layer 3 C1ipsiSCL3C10
Spinal cord layer 4 C1ipsiSCL4C10
Spinal cord layer 1 C1ipsiSCL1C10
Spinal cord layer 2 C1ipsiSCL2C10
Spinal cord layer 7 C1ipsiSCL7C10
Spinal cord layer 8 C1ipsiSCL8C10
Spinal cord layer 9 C1ipsiSCL9C10
Area X C2ipsiSCL10C20
Spinal cord layer 5 C2ipsiSCL5C20
Spinal cord layer 6 C2ipsiSCL6C20
Spinal cord layer 3 C2ipsiSCL3C20
Spinal cord layer 4 C2ipsiSCL4C20
Spinal cord layer 1 C2ipsiSCL1C20
Spinal cord layer 2 C2ipsiSCL2C20
Spinal cord layer 7 C2ipsiSCL7C20
Spinal cord layer 8 C2ipsiSCL8C20
Spinal cord layer 9 C2ipsiSCL9C20
Area X C3ipsiSCL10C30
Spinal cord layer 5 C3ipsiSCL5C30
Spinal cord layer 6 C3ipsiSCL6C30
Spinal cord layer 3 C3ipsiSCL3C30
Spinal cord layer 4 C3ipsiSCL4C30
Spinal cord layer 1 C3ipsiSCL1C30
Spinal cord layer 2 C3ipsiSCL2C30
Spinal cord layer 7 C3ipsiSCL7C30
Spinal cord layer 8 C3ipsiSCL8C30
Spinal cord layer 9 C3ipsiSCL9C30
Area X C4ipsiSCL10C40
Spinal cord layer 5 C4ipsiSCL5C40
Spinal cord layer 6 C4ipsiSCL6C40
Spinal cord layer 3 C4ipsiSCL3C40
Spinal cord layer 4 C4ipsiSCL4C40
Spinal cord layer 1 C4ipsiSCL1C40
Spinal cord layer 2 C4ipsiSCL2C40
Spinal cord layer 7 C4ipsiSCL7C40
Spinal cord layer 8 C4ipsiSCL8C40
Spinal cord layer 9 C4ipsiSCL9C40
Area X C5ipsiSCL10C50
Spinal cord layer 5 C5ipsiSCL5C50
Spinal cord layer 6 C5ipsiSCL6C50
Spinal cord layer 3 C5ipsiSCL3C50
Spinal cord layer 4 C5ipsiSCL4C50
Spinal cord layer 1 C5ipsiSCL1C50
Spinal cord layer 2 C5ipsiSCL2C50
Spinal cord layer 7 C5ipsiSCL7C50
Spinal cord layer 8 C5ipsiSCL8C50
Spinal cord layer 9 C5ipsiSCL9C50
Area X C6ipsiSCL10C60
Spinal cord layer 5 C6ipsiSCL5C60
Spinal cord layer 6 C6ipsiSCL6C60
Spinal cord layer 3 C6ipsiSCL3C60
Spinal cord layer 4 C6ipsiSCL4C60
Spinal cord layer 1 C6ipsiSCL1C60
Spinal cord layer 2 C6ipsiSCL2C60
Spinal cord layer 7 C6ipsiSCL7C60
Spinal cord layer 8 C6ipsiSCL8C60
Spinal cord layer 9 C6ipsiSCL9C60
Area X C7ipsiSCL10C70
Spinal cord layer 5 C7ipsiSCL5C70
Spinal cord layer 6 C7ipsiSCL6C70
Spinal cord layer 3 C7ipsiSCL3C70
Spinal cord layer 4 C7ipsiSCL4C70
Spinal cord layer 1 C7ipsiSCL1C70
Spinal cord layer 2 C7ipsiSCL2C70
Spinal cord layer 7 C7ipsiSCL7C70
Spinal cord layer 8 C7ipsiSCL8C70
Spinal cord layer 9 C7ipsiSCL9C70
Area X C8ipsiSCL10C80
Spinal cord layer 5 C8ipsiSCL5C80
Spinal cord layer 6 C8ipsiSCL6C80
Spinal cord layer 3 C8ipsiSCL3C80
Spinal cord layer 4 C8ipsiSCL4C80
Spinal cord layer 1 C8ipsiSCL1C80
Spinal cord layer 2 C8ipsiSCL2C80
Spinal cord layer 7 C8ipsiSCL7C80
Spinal cord layer 8 C8ipsiSCL8C80
Spinal cord layer 9 C8ipsiSCL9C80
Thoracal segment 1ipsiT10
Area X T1ipsiSCL10T10
Spinal cord layer 5 T1ipsiSCL5T10
Spinal cord layer 6 T1ipsiSCL6T10
Spinal cord layer 3 T1ipsiSCL3T10
Spinal cord layer 4 T1ipsiSCL4T10
Spinal cord layer 1 T1ipsiSCL1T10
Spinal cord layer 2 T1ipsiSCL2T10
Spinal cord layer 7 T1ipsiSCL7T10
Spinal cord layer 8 T1ipsiSCL8T10
Spinal cord layer 9 T1ipsiSCL9T10
Thoracal segment 2ipsiT20
Area X T2ipsiSCL10T20
Spinal cord layer 5 T2ipsiSCL5T20
Spinal cord layer 6 T2ipsiSCL6T20
Spinal cord layer 3 T2ipsiSCL3T20
Spinal cord layer 4 T2ipsiSCL4T20
Spinal cord layer 1 T2ipsiSCL1T20
Spinal cord layer 2 T2ipsiSCL2T20
Spinal cord layer 7 T2ipsiSCL7T20
Spinal cord layer 8 T2ipsiSCL8T20
Spinal cord layer 9 T2ipsiSCL9T20
Thoracal segment 3ipsiT30
Area X T3ipsiSCL10T30
Spinal cord layer 5 T3ipsiSCL5T30
Spinal cord layer 6 T3ipsiSCL6T30
Spinal cord layer 3 T3ipsiSCL3T30
Spinal cord layer 4 T3ipsiSCL4T30
Spinal cord layer 1 T3ipsiSCL1T30
Spinal cord layer 2 T3ipsiSCL2T30
Spinal cord layer 7 T3ipsiSCL7T30
Spinal cord layer 8 T3ipsiSCL8T30
Spinal cord layer 9 T3ipsiSCL9T30
Thoracal segment 4ipsiT40
Area X T4ipsiSCL10T40
Spinal cord layer 5 T4ipsiSCL5T40
Spinal cord layer 6 T4ipsiSCL6T40
Spinal cord layer 3 T4ipsiSCL3T40
Spinal cord layer 4 T4ipsiSCL4T40
Spinal cord layer 1 T4ipsiSCL1T40
Spinal cord layer 2 T4ipsiSCL2T40
Spinal cord layer 7 T4ipsiSCL7T40
Spinal cord layer 8 T4ipsiSCL8T40
Spinal cord layer 9 T4ipsiSCL9T40
Thoracal segment 5ipsiT50
Area X T5ipsiSCL10T50
Spinal cord layer 5 T5ipsiSCL5T50
Spinal cord layer 6 T5ipsiSCL6T50
Spinal cord layer 3 T5ipsiSCL3T50
Spinal cord layer 4 T5ipsiSCL4T50
Spinal cord layer 1 T5ipsiSCL1T50
Spinal cord layer 2 T5ipsiSCL2T50
Spinal cord layer 7 T5ipsiSCL7T50
Spinal cord layer 8 T5ipsiSCL8T50
Spinal cord layer 9 T5ipsiSCL9T50
Thoracal segment 6ipsiT60
Area X T6ipsiSCL10T60
Spinal cord layer 5 T6ipsiSCL5T60
Spinal cord layer 6 T6ipsiSCL6T60
Spinal cord layer 3 T6ipsiSCL3T60
Spinal cord layer 4 T6ipsiSCL4T60
Spinal cord layer 1 T6ipsiSCL1T60
Spinal cord layer 2 T6ipsiSCL2T60
Spinal cord layer 7 T6ipsiSCL7T60
Spinal cord layer 8 T6ipsiSCL8T60
Spinal cord layer 9 T6ipsiSCL9T60
Thoracal segment 7ipsiT70
Area X T7ipsiSCL10T70
Spinal cord layer 5 T7ipsiSCL5T70
Spinal cord layer 6 T7ipsiSCL6T70
Spinal cord layer 3 T7ipsiSCL3T70
Spinal cord layer 4 T7ipsiSCL4T70
Spinal cord layer 1 T7ipsiSCL1T70
Spinal cord layer 2 T7ipsiSCL2T70
Spinal cord layer 7 T7ipsiSCL7T70
Spinal cord layer 8 T7ipsiSCL8T70
Spinal cord layer 9 T7ipsiSCL9T70
Thoracal segment 8ipsiT80
Area X T8ipsiSCL10T80
Spinal cord layer 5 T8ipsiSCL5T80
Spinal cord layer 6 T8ipsiSCL6T80
Spinal cord layer 3 T8ipsiSCL3T80
Spinal cord layer 4 T8ipsiSCL4T80
Spinal cord layer 1 T8ipsiSCL1T80
Spinal cord layer 2 T8ipsiSCL2T80
Spinal cord layer 7 T8ipsiSCL7T80
Spinal cord layer 8 T8ipsiSCL8T80
Spinal cord layer 9 T8ipsiSCL9T80
Thoracal segment 9ipsiT90
Area X T9ipsiSCL10T90
Spinal cord layer 5 T9ipsiSCL5T90
Spinal cord layer 6 T9ipsiSCL6T90
Spinal cord layer 3 T9ipsiSCL3T90
Spinal cord layer 4 T9ipsiSCL4T90
Spinal cord layer 1 T9ipsiSCL1T90
Spinal cord layer 2 T9ipsiSCL2T90
Spinal cord layer 7 T9ipsiSCL7T90
Spinal cord layer 8 T9ipsiSCL8T90
Spinal cord layer 9 T9ipsiSCL9T90
Thoracal segment 10ipsiT100
Area X T10ipsiSCL10T100
Spinal cord layer 5 T10ipsiSCL5T100
Spinal cord layer 6 T10ipsiSCL6T100
Spinal cord layer 3 T10ipsiSCL3T100
Spinal cord layer 4 T10ipsiSCL4T100
Spinal cord layer 1 T10ipsiSCL1T100
Spinal cord layer 2 T10ipsiSCL2T100
Spinal cord layer 7 T10ipsiSCL7T100
Spinal cord layer 8 T10ipsiSCL8T100
Spinal cord layer 9 T10ipsiSCL9T100
Thoracal segment 11ipsiT110
Area X T11ipsiSCL10T110
Spinal cord layer 5 T11ipsiSCL5T110
Spinal cord layer 6 T11ipsiSCL6T110
Spinal cord layer 3 T11ipsiSCL3T110
Spinal cord layer 4 T11ipsiSCL4T110
Spinal cord layer 1 T11ipsiSCL1T110
Spinal cord layer 2 T11ipsiSCL2T110
Spinal cord layer 7 T11ipsiSCL7T110
Spinal cord layer 8 T11ipsiSCL8T110
Spinal cord layer 9 T11ipsiSCL9T110
Thoracal segment 12ipsiT120
Area X T12ipsiSCL10T120
Spinal cord layer 5 T12ipsiSCL5T120
Spinal cord layer 6 T12ipsiSCL6T120
Spinal cord layer 3 T12ipsiSCL3T120
Spinal cord layer 4 T12ipsiSCL4T120
Spinal cord layer 1 T12ipsiSCL1T120
Spinal cord layer 2 T12ipsiSCL2T120
Spinal cord layer 7 T12ipsiSCL7T120
Spinal cord layer 8 T12ipsiSCL8T120
Spinal cord layer 9 T12ipsiSCL9T120
Thoracal segment 13ipsiT130
Area X T13ipsiSCL10T130
Spinal cord layer 5 T13ipsiSCL5T130
Spinal cord layer 6 T13ipsiSCL6T130
Spinal cord layer 3 T13ipsiSCL3T130
Spinal cord layer 4 T13ipsiSCL4T130
Spinal cord layer 1 T13ipsiSCL1T130
Spinal cord layer 2 T13ipsiSCL2T130
Spinal cord layer 7 T13ipsiSCL7T130
Spinal cord layer 8 T13ipsiSCL8T130
Spinal cord layer 9 T13ipsiSCL9T130
Area X L1ipsiSCL10L10
Spinal cord layer 5 L1ipsiSCL5L10
Spinal cord layer 6 L1ipsiSCL6L10
Spinal cord layer 3 L1ipsiSCL3L10
Spinal cord layer 4 L1ipsiSCL4L10
Spinal cord layer 1 L1ipsiSCL1L10
Spinal cord layer 2 L1ipsiSCL2L10
Spinal cord layer 7 L1ipsiSCL7L10
Spinal cord layer 8 L1ipsiSCL8L10
Spinal cord layer 9 L1ipsiSCL9L10
Area X L2ipsiSCL10L20
Spinal cord layer 5 L2ipsiSCL5L20
Spinal cord layer 6 L2ipsiSCL6L20
Spinal cord layer 3 L2ipsiSCL3L20
Spinal cord layer 4 L2ipsiSCL4L20
Spinal cord layer 1 L2ipsiSCL1L20
Spinal cord layer 2 L2ipsiSCL2L20
Spinal cord layer 7 L2ipsiSCL7L20
Spinal cord layer 8 L2ipsiSCL8L20
Spinal cord layer 9 L2ipsiSCL9L20
Area X L3ipsiSCL10L30
Spinal cord layer 5 L3ipsiSCL5L30
Spinal cord layer 6 L3ipsiSCL6L30
Spinal cord layer 3 L3ipsiSCL3L30
Spinal cord layer 4 L3ipsiSCL4L30
Spinal cord layer 1 L3ipsiSCL1L30
Spinal cord layer 2 L3ipsiSCL2L30
Spinal cord layer 7 L3ipsiSCL7L30
Spinal cord layer 8 L3ipsiSCL8L30
Spinal cord layer 9 L3ipsiSCL9L30
Area X L4ipsiSCL10L40
Spinal cord layer 5 L4ipsiSCL5L40
Spinal cord layer 6 L4ipsiSCL6L40
Spinal cord layer 3 L4ipsiSCL3L40
Spinal cord layer 4 L4ipsiSCL4L40
Spinal cord layer 1 L4ipsiSCL1L40
Spinal cord layer 2 L4ipsiSCL2L40
Spinal cord layer 7 L4ipsiSCL7L40
Spinal cord layer 8 L4ipsiSCL8L40
Spinal cord layer 9 L4ipsiSCL9L40
Area X L5ipsiSCL10L50
Spinal cord layer 5 L5ipsiSCL5L50
Spinal cord layer 6 L5ipsiSCL6L50
Spinal cord layer 3 L5ipsiSCL3L50
Spinal cord layer 4 L5ipsiSCL4L50
Spinal cord layer 1 L5ipsiSCL1L50
Spinal cord layer 2 L5ipsiSCL2L50
Spinal cord layer 7 L5ipsiSCL7L50
Spinal cord layer 8 L5ipsiSCL8L50
Spinal cord layer 9 L5ipsiSCL9L50
Area X L6ipsiSCL10L60
Spinal cord layer 5 L6ipsiSCL5L60
Spinal cord layer 6 L6ipsiSCL6L60
Spinal cord layer 3 L6ipsiSCL3L60
Spinal cord layer 4 L6ipsiSCL4L60
Spinal cord layer 1 L6ipsiSCL1L60
Spinal cord layer 2 L6ipsiSCL2L60
Spinal cord layer 7 L6ipsiSCL7L60
Spinal cord layer 8 L6ipsiSCL8L60
Spinal cord layer 9 L6ipsiSCL9L60
Area X S1ipsiSCL10S10
Spinal cord layer 5 S1ipsiSCL5S10
Spinal cord layer 6 S1ipsiSCL6S10
Spinal cord layer 3 S1ipsiSCL3S10
Spinal cord layer 4 S1ipsiSCL4S10
Spinal cord layer 1 S1ipsiSCL1S10
Spinal cord layer 2 S1ipsiSCL2S10
Spinal cord layer 7 S1ipsiSCL7S10
Spinal cord layer 8 S1ipsiSCL8S10
Spinal cord layer 9 S1ipsiSCL9S10
Area X S2ipsiSCL10S20
Spinal cord layer 5 S2ipsiSCL5S20
Spinal cord layer 6 S2ipsiSCL6S20
Spinal cord layer 3 S2ipsiSCL3S20
Spinal cord layer 4 S2ipsiSCL4S20
Spinal cord layer 1 S2ipsiSCL1S20
Spinal cord layer 2 S2ipsiSCL2S20
Spinal cord layer 7 S2ipsiSCL7S20
Spinal cord layer 8 S2ipsiSCL8S20
Spinal cord layer 9 S2ipsiSCL9S20
Area X S3ipsiSCL10S30
Spinal cord layer 5 S3ipsiSCL5S30
Spinal cord layer 6 S3ipsiSCL6S30
Spinal cord layer 3 S3ipsiSCL3S30
Spinal cord layer 4 S3ipsiSCL4S30
Spinal cord layer 1 S3ipsiSCL1S30
Spinal cord layer 2 S3ipsiSCL2S30
Spinal cord layer 7 S3ipsiSCL7S30
Spinal cord layer 8 S3ipsiSCL8S30
Spinal cord layer 9 S3ipsiSCL9S30
Area X S4ipsiSCL10S40
Spinal cord layer 5 S4ipsiSCL5S40
Spinal cord layer 6 S4ipsiSCL6S40
Spinal cord layer 3 S4ipsiSCL3S40
Spinal cord layer 4 S4ipsiSCL4S40
Spinal cord layer 1 S4ipsiSCL1S40
Spinal cord layer 2 S4ipsiSCL2S40
Spinal cord layer 7 S4ipsiSCL7S40
Spinal cord layer 8 S4ipsiSCL8S40
Spinal cord layer 9 S4ipsiSCL9S40
Area X Co1ipsiSCL10Co10
Spinal cord layer 5 Co1ipsiSCL5Co10
Spinal cord layer 6 Co1ipsiSCL6Co10
Spinal cord layer 3 Co1ipsiSCL3Co10
Spinal cord layer 4 Co1ipsiSCL4Co10
Spinal cord layer 1 Co1ipsiSCL1Co10
Spinal cord layer 2 Co1ipsiSCL2Co10
Spinal cord layer 7 Co1ipsiSCL7Co10
Spinal cord layer 8 Co1ipsiSCL8Co10
Spinal cord layer 9 Co1ipsiSCL9Co10
Area X Co2ipsiSCL10Co20
Spinal cord layer 5 Co2ipsiSCL5Co20
Spinal cord layer 6 Co2ipsiSCL6Co20
Spinal cord layer 3 Co2ipsiSCL3Co20
Spinal cord layer 4 Co2ipsiSCL4Co20
Spinal cord layer 1 Co2ipsiSCL1Co20
Spinal cord layer 2 Co2ipsiSCL2Co20
Spinal cord layer 7 Co2ipsiSCL7Co20
Spinal cord layer 8 Co2ipsiSCL8Co20
Spinal cord layer 9 Co2ipsiSCL9Co20
Area X Co3ipsiSCL10Co30
Spinal cord layer 5 Co3ipsiSCL5Co30
Spinal cord layer 6 Co3ipsiSCL6Co30
Spinal cord layer 3 Co3ipsiSCL3Co30
Spinal cord layer 4 Co3ipsiSCL4Co30
Spinal cord layer 1 Co3ipsiSCL1Co30
Spinal cord layer 2 Co3ipsiSCL2Co30
Spinal cord layer 7 Co3ipsiSCL7Co30
Spinal cord layer 8 Co3ipsiSCL8Co30
Spinal cord layer 9 Co3ipsiSCL9Co30
Medial aspect of the caudal peduncularpontine nucleuscontraPPNMCa0.5
Medial aspect of the rostral peduncularpontine nucleuscontraPPNMR0.5
Pedunculopontine tegmental nucleus caudal partcontraPPTgC0.5
Pedunculopontine tegmental nucleus rostral partcontraPPTgR0.5
Motoric regionscontraM0.5

Input from

NameSideAbbr.WeightDetails
Peduncularpontine nucleusipsiPPN-0.5
Laterodorsal tegmental nucleusipsiLDTg-0.5
Pontomesencephalic grayipsiPoMG3
Diagonal band of BrocaipsiDBB-0.5
Medial septal nucleusipsiMS3
Substantia innominataipsiSI3
Substantia innominata medial partipsiSIme1
Lateral preoptic area medial partipsiLPOm-0.5
HypothalamusipsiHYPO3
Arcuate nucleusipsiArc3
Supramammillar nucleusipsiSuM-0.5
Perifornical nucleusipsiPeF3
Bed nucleus of the stria terminalisipsiBST2
Field CA1 of hippocampus ventral poleipsiCA1vp1
Retrosplenial agranular cortexipsiRSA3
Lateral septal nucleus dorsal partipsiLSD-0.5
Ventrally lateral septal nucleus rostral part medial zoneipsiLSrmV1
Ventral telencephalonipsiVTEL3
Peduncularpontine nucleuscontraPPN-0.5
Laterodorsal tegmental nucleuscontraLDTg-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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