University of Rostock

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Rat connectome



Ventral horn C1 left


Abbreviation
VHC1
Color       
Superior regionsSpinal cord layers C1

SynonymsAbbr.Language
Ventral horn C1VHC1Eng
Anterior horn C1 Eng

SubregionsSide
Base of ventral horn C1left
Dorsolateral motor nuclei of the ventral horn C1left
Dorsomedial motor nuclei C1left
Intermediate zone C1left
Intermediate zone of ventral horn C1left
Interneuron groups of layer 9 C1left
Motoneuron groups of layer 9 C1left
Spinal cord layer 9 C1left
Ventromedial motor nuclei of the ventral horn C1left
Ventrolateral motor nuclei of the ventral horn C1left

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG1
Inferior colliculusipsiICOL1
Superior colliculusipsiSC1
Tegmental areaipsiTGA1
Posterior lobe of the cerebellumipsiCERCPL1
Anterior lobeipsiAnL2
Mesencephalic reticular formationipsiMRF1
Cuneiforme nucleusipsiCnF1
Gigantocellular reticular nucleusipsiGi3
Lateral reticular nucleusipsiLRt-0.5
Lateral reticular nucleus magnocellular partipsiLRtMC2
Lateral reticular nucleus parvicellular partipsiLRtPC1
Lateral reticular nucleus subtrigeminal partipsiLRtS50
Spinal accessory nerveipsiSAN3
Nucleus of the solitary tractipsiSol-0.5
Dorsal column nucleiipsiDCN2
Cuneate nucleusipsiCu3
Retrotrapezoid nucleusipsiRTN1
Lateral hypothalamic areaipsiLH1.5
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0.5
Paraventricular hypothalamic nucleusipsiPa0.5
Suprachiasmatic nucleusipsiSCh0.5
Supraoptic nucleus [Supraoptic region]ipsiSO0.5
ThalamusipsiT3
Lateral group of the dorsal thalamusipsiLAT3
Posterior thalamic nuclear group medial partipsiPoMe-0.5
Submedius thalamic nucleusipsiSub1.5
Ventrobasal complex anterior partipsiVBa0.5
Central amygdaloid nucleusipsiCe2
Orbital cortexipsiOrC0.5
Lumbar segment 1ipsiL1-1
Dorsal horn L5ipsiDHL53
Dorsal horn L6ipsiDHL63
Dorsal horn S1ipsiDHS13
Central graycontraCG-0.5
Caudal one third of the superior colliculuscontracotSC-0.5
Tegmental areacontraTGA-0.5
Cuneiforme nucleuscontraCnF-0.5
Lateral reticular nucleus magnocellular partcontraLRtMC3
Lateral reticular nucleus parvicellular partcontraLRtPC1
Lateral reticular nucleus subtrigeminal partcontraLRtS51
Cuneate nucleuscontraCu1
Retrotrapezoid nucleuscontraRTN0.5
Lateral hypothalamic areacontraLH3
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT3
Posterior thalamic nuclear group medial partcontraPoMe-0.5
Submedius thalamic nucleuscontraSub3
Ventrobasal complex anterior partcontraVBa1
Central amygdaloid nucleuscontraCe0.5
Orbital cortexcontraOrC0.5
Dorsal horn L5contraDHL53
Dorsal horn L6contraDHL63
Dorsal horn S1contraDHS13
Vagus nerveipsiAutoV-0.5
Facial nerveipsi7fn-0.5
Greater occipital nerveipsiPNSgo-0.5
Longus capitis muscleipsiMuscLoCa-0.5

Input from

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC1
Interposed cerebellar nucleiipsiICN2
Lateral cerebellar nucleusipsiCERL2
Medial cerebellar nucleusipsiMed3
A5 noradrenaline cellsipsiA51.5
A7 noradrenaline cellsipsiA71.5
Locus coeruleusipsiLC2
Locus coeruleus caudal partipsiLCca-0.5
Locus coeruleus ventral partipsiLCv-0.5
Parapyramidal nucleusipsiPPy-0.5
Mesencephalic reticular formationipsiMRF0.5
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA2
Gigantocellular reticular nucleus ventral partipsiGiV1
Dorsomedial part of the subnucleus reticularis dorsalisipsiSRDm-0.5
Medial medullary reticular nucleusipsiMMdD3
Medial subnucleus reticularis ventralisipsiMSRV1
Subcoeruleus nucleusipsiSubC1.5
Subcoeruleus nucleus alpha partipsiSubCA-0.5
Subcoeruleus nucleus dorsal partipsiSubCD-0.5
Subcoeruleus nucleus ventral partipsiSubCV-0.5
Subcoeruleus nucleus dorsoventral extentipsiSubCdv3
Spinal vestibular nucleusipsiSpVe3
Superior vestibular nucleusipsiSuVe3
Medial vestibular nucleus caudal partipsiMVeP-0.5
Medial vestibular nucleus rostral partipsiMVeR-0.5
Lateral vestibular nucleusipsiLVe3
Nucleus of the solitary tract ventrolateral partipsiSolVL-0.5
Raphe nucleiipsiRAN3
Caudal raphe nucleiipsiRANc-0.5
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb3
Raphe pallidus nucleusipsiRPa3
Ventral lateral medulla oblongataipsiMVL-0.5
Nucleus interfascicularis hypoglossiipsiNIFH-0.5
Paragigantocellular reticular nucleusipsiPGi1
Lateral paragigantocellular nucleusipsiLPGi2
Retrotrapezoid nucleusipsiRTN-0.5
Ventral medulla oblongataipsiVMeO-0.5
Lateral hypothalamic areaipsiLH1
Midlateral posterior hypothalamic areaipsiPHAmL0
Parafascicular thalamic nucleusipsiPF1
Parafascicular thalamic nucleus lateral partipsiPFL-3
Zona incertaipsiZI-0.5
Dorsal root ganglion C7ipsiDRGC7-0.5
Lateral spinal nucleus L3ipsiLSpL31
Area X L3ipsiSCL10L30.5
Spinal cord layer 5 L3ipsiSCL5L32
Spinal cord layer 6 L3ipsiSCL6L32
Spinal cord layer 3 L3ipsiSCL3L30.5
Spinal cord layer 4 L3ipsiSCL4L32
Spinal cord layer 1 L3ipsiSCL1L30.5
Spinal cord layer 2 L3ipsiSCL2L30.5
Spinal cord layer 7 L3ipsiSCL7L33
Spinal cord layer 8 L3ipsiSCL8L33
Spinal cord layer 9 L3ipsiSCL9L30
Lateral spinal nucleus L4ipsiLSpL40.5
Area X L4ipsiSCL10L40.5
Spinal cord layer 5 L4ipsiSCL5L40.5
Spinal cord layer 6 L4ipsiSCL6L40.5
Spinal cord layer 3 L4ipsiSCL3L40.5
Spinal cord layer 4 L4ipsiSCL4L40.5
Spinal cord layer 1 L4ipsiSCL1L40.5
Spinal cord layer 2 L4ipsiSCL2L40.5
Spinal cord layer 7 L4ipsiSCL7L41
Spinal cord layer 8 L4ipsiSCL8L41
Spinal cord layer 9 L4ipsiSCL9L40
Lateral spinal nucleus L5ipsiLSpL51
Area X L5ipsiSCL10L51
Spinal cord layer 5 L5ipsiSCL5L51
Spinal cord layer 6 L5ipsiSCL6L51
Spinal cord layer 3 L5ipsiSCL3L50.5
Spinal cord layer 4 L5ipsiSCL4L51
Spinal cord layer 1 L5ipsiSCL1L50.5
Spinal cord layer 2 L5ipsiSCL2L50.5
Spinal cord layer 7 L5ipsiSCL7L51
Spinal cord layer 8 L5ipsiSCL8L51
Spinal cord layer 9 L5ipsiSCL9L50
Lateral spinal nucleus L6ipsiLSpL61
Area X L6ipsiSCL10L60.5
Spinal cord layer 5 L6ipsiSCL5L61
Spinal cord layer 6 L6ipsiSCL6L61
Spinal cord layer 3 L6ipsiSCL3L60
Spinal cord layer 4 L6ipsiSCL4L61
Spinal cord layer 1 L6ipsiSCL1L60.5
Spinal cord layer 2 L6ipsiSCL2L60.5
Spinal cord layer 7 L6ipsiSCL7L61
Spinal cord layer 8 L6ipsiSCL8L61
Spinal cord layer 9 L6ipsiSCL9L60
Lateral spinal nucleus S1ipsiLSpS11
Area X S1ipsiSCL10S10.5
Spinal cord layer 5 S1ipsiSCL5S11
Spinal cord layer 6 S1ipsiSCL6S11
Spinal cord layer 3 S1ipsiSCL3S10
Spinal cord layer 4 S1ipsiSCL4S11
Spinal cord layer 1 S1ipsiSCL1S10.5
Spinal cord layer 2 S1ipsiSCL2S10.5
Spinal cord layer 7 S1ipsiSCL7S11
Spinal cord layer 8 S1ipsiSCL8S11
Spinal cord layer 9 S1ipsiSCL9S10
Lateral spinal nucleus S2ipsiLSpS21
Area X S2ipsiSCL10S20.5
Spinal cord layer 5 S2ipsiSCL5S21
Spinal cord layer 6 S2ipsiSCL6S21
Spinal cord layer 3 S2ipsiSCL3S20
Spinal cord layer 4 S2ipsiSCL4S21
Spinal cord layer 1 S2ipsiSCL1S20.5
Spinal cord layer 2 S2ipsiSCL2S20.5
Spinal cord layer 7 S2ipsiSCL7S21
Spinal cord layer 8 S2ipsiSCL8S21
Spinal cord layer 9 S2ipsiSCL9S20
Lateral spinal nucleus S3ipsiLSpS31
Area X S3ipsiSCL10S30.5
Spinal cord layer 5 S3ipsiSCL5S31
Spinal cord layer 6 S3ipsiSCL6S31
Spinal cord layer 3 S3ipsiSCL3S30
Spinal cord layer 4 S3ipsiSCL4S31
Spinal cord layer 1 S3ipsiSCL1S30.5
Spinal cord layer 2 S3ipsiSCL2S30.5
Spinal cord layer 7 S3ipsiSCL7S31
Spinal cord layer 8 S3ipsiSCL8S31
Spinal cord layer 9 S3ipsiSCL9S30
Lateral spinal nucleus S4ipsiLSpS41
Area X S4ipsiSCL10S40.5
Spinal cord layer 5 S4ipsiSCL5S41
Spinal cord layer 6 S4ipsiSCL6S41
Spinal cord layer 3 S4ipsiSCL3S40
Spinal cord layer 4 S4ipsiSCL4S41
Spinal cord layer 1 S4ipsiSCL1S40.5
Spinal cord layer 2 S4ipsiSCL2S40.5
Spinal cord layer 7 S4ipsiSCL7S41
Spinal cord layer 8 S4ipsiSCL8S41
Spinal cord layer 9 S4ipsiSCL9S40
Periaqueductal graycontraPAG0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0
Caudal one third of the superior colliculuscontracotSC-0.5
Superior colliculus intermediate layerscontraSCi3
Mid-ventral part of the intermediate white layer of the superior colliculuscontraInWhmv-0.5
Pedunculopontine tegmental nucleuscontraPPTg3
Interstitial nucleus of CajalcontraInC0.5
A5 noradrenaline cellscontraA51
A7 noradrenaline cellscontraA71
Locus coeruleuscontraLC2
Mesencephalic reticular formationcontraMRF0.5
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus alpha partcontraGiA0.5
Gigantocellular reticular nucleus ventral partcontraGiV0.5
Dorsomedial part of the subnucleus reticularis dorsaliscontraSRDm-0.5
Medial medullary reticular nucleuscontraMMdD3
Medial subnucleus reticularis ventraliscontraMSRV1
Subcoeruleus nucleuscontraSubC1
Subcoeruleus nucleus alpha partcontraSubCA-0.5
Subcoeruleus nucleus dorsal partcontraSubCD-0.5
Subcoeruleus nucleus ventral partcontraSubCV-0.5
Subcoeruleus nucleus dorsoventral extentcontraSubCdv3
Spinal vestibular nucleuscontraSpVe3
Superior vestibular nucleuscontraSuVe3
Medial vestibular nucleus caudal partcontraMVeP-0.5
Medial vestibular nucleus rostral partcontraMVeR-0.5
Lateral vestibular nucleuscontraLVe3
Raphe nucleicontraRAN3
Nucleus interfascicularis hypoglossicontraNIFH-0.5
Paragigantocellular reticular nucleuscontraPGi1
Lateral paragigantocellular nucleuscontraLPGi1
Retrotrapezoid nucleuscontraRTN-0.5
Rostral ventral respiratory groupcontraRVRG-0.5
Ventral medulla oblongatacontraVMeO-0.5
Parafascicular thalamic nucleuscontraPF1
Parafascicular thalamic nucleus lateral partcontraPFL1
Cerebral cortexcontraCEC1
Lateral spinal nucleus L3contraLSpL30.5
Area X L3contraSCL10L30.5
Spinal cord layer 5 L3contraSCL5L32
Spinal cord layer 6 L3contraSCL6L32
Spinal cord layer 3 L3contraSCL3L30.5
Spinal cord layer 4 L3contraSCL4L32
Spinal cord layer 1 L3contraSCL1L31
Spinal cord layer 2 L3contraSCL2L31
Spinal cord layer 7 L3contraSCL7L34
Spinal cord layer 8 L3contraSCL8L34
Spinal cord layer 9 L3contraSCL9L30.5
Lateral spinal nucleus L4contraLSpL41
Area X L4contraSCL10L40.5
Spinal cord layer 5 L4contraSCL5L42
Spinal cord layer 6 L4contraSCL6L42
Spinal cord layer 3 L4contraSCL3L40.5
Spinal cord layer 4 L4contraSCL4L42
Spinal cord layer 1 L4contraSCL1L41
Spinal cord layer 2 L4contraSCL2L41
Spinal cord layer 7 L4contraSCL7L43
Spinal cord layer 8 L4contraSCL8L43
Spinal cord layer 9 L4contraSCL9L40
Lateral spinal nucleus L5contraLSpL51
Area X L5contraSCL10L51
Spinal cord layer 5 L5contraSCL5L51
Spinal cord layer 6 L5contraSCL6L51
Spinal cord layer 3 L5contraSCL3L50.5
Spinal cord layer 4 L5contraSCL4L51
Spinal cord layer 1 L5contraSCL1L51
Spinal cord layer 2 L5contraSCL2L51
Spinal cord layer 7 L5contraSCL7L54
Spinal cord layer 8 L5contraSCL8L54
Spinal cord layer 9 L5contraSCL9L50.5
Lateral spinal nucleus L6contraLSpL61
Area X L6contraSCL10L61
Spinal cord layer 5 L6contraSCL5L61
Spinal cord layer 6 L6contraSCL6L61
Spinal cord layer 3 L6contraSCL3L60.5
Spinal cord layer 4 L6contraSCL4L61
Spinal cord layer 1 L6contraSCL1L61
Spinal cord layer 2 L6contraSCL2L61
Spinal cord layer 7 L6contraSCL7L64
Spinal cord layer 8 L6contraSCL8L64
Spinal cord layer 9 L6contraSCL9L60.5
Lateral spinal nucleus S1contraLSpS11
Area X S1contraSCL10S11
Spinal cord layer 5 S1contraSCL5S11
Spinal cord layer 6 S1contraSCL6S11
Spinal cord layer 3 S1contraSCL3S10.5
Spinal cord layer 4 S1contraSCL4S11
Spinal cord layer 1 S1contraSCL1S11
Spinal cord layer 2 S1contraSCL2S11
Spinal cord layer 7 S1contraSCL7S14
Spinal cord layer 8 S1contraSCL8S14
Spinal cord layer 9 S1contraSCL9S10.5
Lateral spinal nucleus S2contraLSpS21
Area X S2contraSCL10S21
Spinal cord layer 5 S2contraSCL5S21
Spinal cord layer 6 S2contraSCL6S21
Spinal cord layer 3 S2contraSCL3S20.5
Spinal cord layer 4 S2contraSCL4S21
Spinal cord layer 1 S2contraSCL1S21
Spinal cord layer 2 S2contraSCL2S21
Spinal cord layer 7 S2contraSCL7S23
Spinal cord layer 8 S2contraSCL8S23
Spinal cord layer 9 S2contraSCL9S20.5
Lateral spinal nucleus S3contraLSpS31
Area X S3contraSCL10S31
Spinal cord layer 5 S3contraSCL5S31
Spinal cord layer 6 S3contraSCL6S31
Spinal cord layer 3 S3contraSCL3S30.5
Spinal cord layer 4 S3contraSCL4S31
Spinal cord layer 1 S3contraSCL1S31
Spinal cord layer 2 S3contraSCL2S31
Spinal cord layer 7 S3contraSCL7S33
Spinal cord layer 8 S3contraSCL8S33
Spinal cord layer 9 S3contraSCL9S30.5
Lateral spinal nucleus S4contraLSpS40.5
Area X S4contraSCL10S40.5
Spinal cord layer 5 S4contraSCL5S41
Spinal cord layer 6 S4contraSCL6S41
Spinal cord layer 3 S4contraSCL3S40.5
Spinal cord layer 4 S4contraSCL4S41
Spinal cord layer 1 S4contraSCL1S40.5
Spinal cord layer 2 S4contraSCL2S40.5
Spinal cord layer 7 S4contraSCL7S41
Spinal cord layer 8 S4contraSCL8S41
Spinal cord layer 9 S4contraSCL9S40
Vibrissal follicle row AipsiVFCrA0.5
Trachea wallipsiOrgsTrasW-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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