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Rat connectome



Ischiocavernosus muscle left


Abbreviation
Muscicav
Color       
Superior regionsPelvic

SynonymsAbbr.Language
Ischiocavernosus muscleMuscicav 

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG-10
Central gray mesencephalic partipsiCGM-10
Ventral tegmental area A10ipsiVTA-10
Ventral tegmental nucleusipsiVTg-10
A5 noradrenaline cellsipsiA5-10
Barringtons nucleusipsiBar-10
Locus coeruleusipsiLC-10
Parapyramidal nucleusipsiPPy-10
Reticular systemipsiRF-10
Pontine reticular nucleusipsiPRN-10
Medullary reticular nucleusipsiMdD-10
Subcoeruleus nucleusipsiSubC-10
Raphe nucleiipsiRAN-10
Ventral lateral medulla oblongataipsiMVL-10
Ventromedial medulla oblongataipsiMeObvm-10
Medial preoptic areaipsiMPA-10
Lateral hypothalamic areaipsiLH-10
Anterior hypothalamic areaipsiAHA-10
Anterior hypothalamic area lateral partipsiAHAl-10
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM-10
Periventricular zoneipsiPVZ-10
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR-10
Paraventricular hypothalamic nucleusipsiPa-10
Periventricular hypothalamic nucleusipsiPe-10
Ventral hypothalamic regionipsiVHR-10
Cervical segment 1ipsiCS1-10
Spinal cord layers C1ipsiSCLC1-10
Cervical segment 2ipsiCS2-10
Spinal cord layers C2ipsiSCLC2-10
Cervical segment 3ipsiCS3-10
Spinal cord layers C3ipsiSCLC3-10
Cervical segment 4ipsiCS4-10
Spinal cord layers C4ipsiSCLC4-10
Cervical segment 5ipsiCS5-10
Spinal cord layers C5ipsiSCLC5-10
Cervical segment 6ipsiCS6-10
Spinal cord layers C6ipsiSCLC6-10
Cervical segment 7ipsiCS7-10
Spinal cord layers C7ipsiSCLC7-10
Spinal cord layers T1ipsiSCLT1-10
Area X T1ipsiSCL10T1-10
Spinal cord layer 5 T1ipsiSCL5T1-10
Spinal cord layer 7 T1ipsiSCL7T1-10
Spinal cord layers T2ipsiSCLT2-10
Area X T2ipsiSCL10T2-10
Spinal cord layer 5 T2ipsiSCL5T2-10
Spinal cord layer 7 T2ipsiSCL7T2-10
Spinal cord layers T3ipsiSCLT3-10
Area X T3ipsiSCL10T3-10
Spinal cord layer 5 T3ipsiSCL5T3-10
Spinal cord layer 7 T3ipsiSCL7T3-10
Spinal cord layers T4ipsiSCLT4-10
Area X T4ipsiSCL10T4-10
Spinal cord layer 5 T4ipsiSCL5T4-10
Spinal cord layer 7 T4ipsiSCL7T4-10
Spinal cord layers T5ipsiSCLT5-10
Area X T5ipsiSCL10T5-10
Spinal cord layer 5 T5ipsiSCL5T5-10
Spinal cord layer 7 T5ipsiSCL7T5-10
Spinal cord layers T6ipsiSCLT6-10
Area X T6ipsiSCL10T6-10
Spinal cord layer 5 T6ipsiSCL5T6-10
Spinal cord layer 7 T6ipsiSCL7T6-10
Spinal cord layers T7ipsiSCLT7-10
Area X T7ipsiSCL10T7-10
Spinal cord layer 5 T7ipsiSCL5T7-10
Spinal cord layer 7 T7ipsiSCL7T7-10
Spinal cord layers T8ipsiSCLT8-10
Area X T8ipsiSCL10T8-10
Spinal cord layer 5 T8ipsiSCL5T8-10
Spinal cord layer 7 T8ipsiSCL7T8-10
Spinal cord layers T9ipsiSCLT9-10
Area X T9ipsiSCL10T9-10
Spinal cord layer 5 T9ipsiSCL5T9-10
Spinal cord layer 7 T9ipsiSCL7T9-10
Spinal cord layers T10ipsiSCLT10-10
Area X T10ipsiSCL10T10-10
Spinal cord layer 5 T10ipsiSCL5T10-10
Spinal cord layer 7 T10ipsiSCL7T10-10
Area X T11ipsiSCL10T11-10
Spinal cord layer 5 T11ipsiSCL5T11-10
Spinal cord layer 7 T11ipsiSCL7T11-10
Area X T12ipsiSCL10T12-10
Spinal cord layer 5 T12ipsiSCL5T12-10
Spinal cord layer 7 T12ipsiSCL7T12-10
Intermediolateral cell column T13ipsiIMLT13-10
Area X T13ipsiSCL10T13-10
Spinal cord layer 5 T13ipsiSCL5T13-10
Spinal cord layer 3 T13ipsiSCL3T13-10
Spinal cord layer 1 T13ipsiSCL1T13-10
Spinal cord layer 2 T13ipsiSCL2T13-10
Spinal cord layer 7 T13ipsiSCL7T13-10
Spinal cord layer 8 T13ipsiSCL8T13-10
Spinal cord layer 9 T13ipsiSCL9T13-10
Intermediolateral cell column L1ipsiIMLL1-10
Area X L1ipsiSCL10L1-10
Spinal cord layer 5 L1ipsiSCL5L1-10
Spinal cord layer 3 L1ipsiSCL3L1-10
Spinal cord layer 1 L1ipsiSCL1L1-10
Spinal cord layer 2 L1ipsiSCL2L1-10
Spinal cord layer 7 L1ipsiSCL7L1-10
Spinal cord layer 8 L1ipsiSCL8L1-10
Spinal cord layer 9 L1ipsiSCL9L1-10
Intermediolateral cell column L2ipsiIMLL2-10
Area X L2ipsiSCL10L2-10
Spinal cord layer 5 L2ipsiSCL5L2-10
Spinal cord layer 3 L2ipsiSCL3L2-10
Spinal cord layer 1 L2ipsiSCL1L2-10
Spinal cord layer 2 L2ipsiSCL2L2-10
Spinal cord layer 7 L2ipsiSCL7L2-10
Spinal cord layer 8 L2ipsiSCL8L2-10
Spinal cord layer 9 L2ipsiSCL9L2-10
Area X L3ipsiSCL10L3-10
Spinal cord layer 5 L3ipsiSCL5L3-10
Spinal cord layer 3 L3ipsiSCL3L3-10
Spinal cord layer 1 L3ipsiSCL1L3-10
Spinal cord layer 2 L3ipsiSCL2L3-10
Spinal cord layer 7 L3ipsiSCL7L3-10
Spinal cord layer 8 L3ipsiSCL8L3-10
Spinal cord layer 9 L3ipsiSCL9L3-10
Area X L4ipsiSCL10L4-10
Spinal cord layer 5 L4ipsiSCL5L4-10
Spinal cord layer 3 L4ipsiSCL3L4-10
Spinal cord layer 1 L4ipsiSCL1L4-10
Spinal cord layer 2 L4ipsiSCL2L4-10
Spinal cord layer 7 L4ipsiSCL7L4-10
Spinal cord layer 8 L4ipsiSCL8L4-10
Spinal cord layer 9 L4ipsiSCL9L4-10
Dorsolateral nucleus lumbal segment 5ipsiDLNL5-0.5
Lateral division of dorsolateral nucleus lumbal segment 5ipsiLDLNL5-10
Medial division of dorsolateral nucleus lumbal segment 5ipsiMDLNL5-0.5
Dorsomedial nucleus lumbal segment 5ipsiDMNL5-0.5
Intermediolateral cell column L5ipsiIMLL5-10
Intermediomedial cell column L5 Onufs nucleus dorsolateral partipsiIMML5onudL-0.5
Intermediomedial cell column L5 Onufs nucleus dorsolateral part medial partipsiIMML5onudLm-0.5
Intermediomedial cell column L5 Onufs nucleus dorsomedial partipsiIMML5onudM-0.5
Area X L5ipsiSCL10L5-10
Spinal cord layer 5 L5ipsiSCL5L5-10
Spinal cord layer 6 L5ipsiSCL6L5-10
Spinal cord layer 3 L5ipsiSCL3L5-10
Spinal cord layer 4 L5ipsiSCL4L5-10
Spinal cord layer 1 L5ipsiSCL1L5-10
Spinal cord layer 2 L5ipsiSCL2L5-10
Spinal cord layer 7 L5ipsiSCL7L5-10
Spinal cord layer 8 L5ipsiSCL8L5-10
Spinal cord layer 9 L5ipsiSCL9L5-10
Dorsolateral nucleus lumbal segment 6ipsiDLNL6-0.5
Lateral division of dorsolateral nucleus lumbal segment 6ipsiLDLNL6-10
Medial part of the dorsolateral nucleus lumbal segment 6ipsiMDLNL6-0.5
Dorsomedial nucleus lumbal segment 6ipsiDMNL6-0.5
Intermediolateral cell column L6ipsiIMLL6-0.5
Intermediomedial cell column L6 Onufs nucleusipsiIMML6onu-0.5
Intermediomedial cell column L6 Onufs nucleus dorsolateral partipsiIMML6onudL-0.5
Intermediomedial cell column L6 Onufs nucleus dorsolateral part medial partipsiIMML6onudLm-0.5
Intermediomedial cell column L6 Onufs nucleus dorsomedial partipsiIMML6onudM-0.5
Area X L6ipsiSCL10L6-10
Spinal cord layer 5 L6ipsiSCL5L6-0.5
Spinal cord layer 6 L6ipsiSCL6L6-10
Spinal cord layer 3 L6ipsiSCL3L6-10
Spinal cord layer 4 L6ipsiSCL4L6-10
Spinal cord layer 1 L6ipsiSCL1L6-10
Spinal cord layer 2 L6ipsiSCL2L6-10
Spinal cord layer 7 L6ipsiSCL7L6-0.5
Spinal cord layer 8 L6ipsiSCL8L6-0.5
Spinal cord layer 9 L6ipsiSCL9L6-0.5
Spinal cord layer 9 L6 dorsomedial motoneuronsipsiSCL9L6dm-0.5
Dorsolateral motoneuron nucleus of the lumbar spinal cordipsiLSegmnL-0.5
Medial part of the dorsolateral motoneuron nucleus of the lumbar spinal cordipsiLSegmnLM-0.5
Dorsolateral nucleus of the sacral segment 1ipsiSa1DL-0.5
Intermediolateral cell column S1ipsiIMLS1-0.5
Area X S1ipsiSCL10S1-10
Spinal cord layer 5 S1ipsiSCL5S1-10
Spinal cord layer 6 S1ipsiSCL6S1-10
Spinal cord layer 3 S1ipsiSCL3S1-10
Spinal cord layer 4 S1ipsiSCL4S1-10
Spinal cord layer 1 S1ipsiSCL1S1-10
Spinal cord layer 2 S1ipsiSCL2S1-10
Spinal cord layer 7 S1ipsiSCL7S1-10
Spinal cord layer 8 S1ipsiSCL8S1-10
Spinal cord layer 9 S1ipsiSCL9S1-10
Intermediolateral cell column S2ipsiIMLS2-0.5
Central gray mesencephalic partcontraCGM-10
Ventral tegmental nucleuscontraVTg-10
A5 noradrenaline cellscontraA5-10
Barringtons nucleuscontraBar-10
Locus coeruleuscontraLC-10
Parapyramidal nucleuscontraPPy-10
Reticular systemcontraRF-10
Raphe nucleicontraRAN-10
Ventral lateral medulla oblongatacontraMVL-10
Medial preoptic areacontraMPA-10
Anterior hypothalamic area lateral partcontraAHAl-10
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-10
Periventricular zonecontraPVZ-10
Nucleus paraventricularis [Periventricular zone anterior region]contraPaPAR-10
Ventral hypothalamic regioncontraVHR-10
Lateral division of dorsolateral nucleus lumbal segment 5contraLDLNL5-10
Dorsomedial nucleus lumbal segment 5contraDMNL5-0.5
Area X L5contraSCL10L5-10
Spinal cord layer 7 L5contraSCL7L5-10
Spinal cord layer 8 L5contraSCL8L5-10
Lateral division of dorsolateral nucleus lumbal segment 6contraLDLNL6-10
Dorsomedial nucleus lumbal segment 6contraDMNL6-0.5
Area X L6contraSCL10L6-10
Spinal cord layer 7 L6contraSCL7L6-10
Spinal cord layer 8 L6contraSCL8L6-10

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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