University of Rostock

Department of Anatomy

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Rat connectome



Central gray mesencephalic part superior colliculus level right


Abbreviation
CGMsc
Color       
Superior regionsCentral gray mesencephalic part

SynonymsAbbr.Language
Central gray mesencephalic part superior colliculus levelCGMscEng

Input from

NameSideAbbr.WeightDetails
Substantia nigra compact partipsiSNC0.5
Substantia nigra reticular partipsiSNR-1
Ventral tegmental area A10ipsiVTA-1
Nucleus of the horizontal limb of the diagonal bandipsiHDB-1
Nucleus of the vertical limb of the diagonal bandipsiVDB-1
Medial preoptic areaipsiMPA1.5
Magnocellular preoptic nucleusipsiMCPO-1
Lateral hypothalamic areaipsiLH-1
Lateral hypothalamic area ventral partipsiLHAvp-1
Anterior hypothalamic areaipsiAHA2
Anterior hypothalamic area lateral partipsiAHAl-1
Anterior hypothalamic area medial partipsiAHAm-1
Posterior hypothalamic areaipsiPHA-1
Ventromedial hypothalamic nucleus anterior partipsiVMHA2
Ventromedial hypothalamic nucleus central partipsiVMHC-1
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM2
Ventromedial hypothalamic nucleus posterior partipsiVMHP0.5
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL2.5
Arcuate nucleusipsiArc-1
Paraventricular hypothalamic nucleusipsiPa0.5
Suprachiasmatic nucleusipsiSCh2
Premammillary nucleus dorsal partipsiPMD1
Supramammillar nucleusipsiSuM-1
Parafascicular thalamic nucleusipsiPF0.5
Zona incertaipsiZI2
Nucleus of the fields of ForelipsiF2
Zona incerta mediolateral extendipsiZIml1.5
Zona incerta rostral partipsiZIR1.5
Lateral habenular nucleusipsiLHb1
Cerebral peduncle basal partipsicp-1
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd0.5
Bed nucleus of the stria terminalis ventral partipsiBNSTv-1
Central amygdaloid nucleusipsiCe1
Central amygdaloid nucleus medial divisionipsiCeM1
Central amygdaloid nucleus ventral partipsiCeV1
Anterior amygdaloid areaipsiAA0.5
Medial amygdaloid nucleusipsiMe0.5
Fornixipsif1
Cerebral cortex layer 5ipsiCCL5-1
Cingulate cortexipsiCg-1
Cingulate cortex area 2ipsiCg2-1
Prelimbic cortexipsiPrL-1
Retrolimbic areaipsiReLA-1
Frontal cortex area 1ipsiFr1-1
Frontal cortex area 2ipsiFr2-1
Frontal cortex area 3ipsiFr3-1
Lateral agranular prefrontal cortexipsiAGl-1
Primary visual cortexipsiV1-1
Secondary visual cortexipsiV2-1
Lateral orbital cortexipsiLO-1
Posterior orbital cortexipsiOrCP-1
Septal regionipsiSER-1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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