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Rat connectome



Anterior hypothalamic area right


Abbreviation
AHA
Color       
Superior regionsMedial zone

SynonymsAbbr.Language
Anterior hypothalamic area [Regio rostralis]  
Anterior hypothalamic areaAHAEng
Anterior hypothalamic nucleus Eng
Area hypothalamica anteriorAHLat
Anterior nucleus of the hypothalamus  
 AHyEng
Anterior hypothalamus  
Anterior hypothalamic areaAHEng

SubregionsSide
Accessory neurophysin cell groupsright
Anterior hypothalamic area anterior partright
Anterior hypothalamic area central partright
Anterior hypothalamic area dorsal partright
Anterior hypothalamic area inferior partright
Anterior hypothalamic area lateral partright
Anterior hypothalamic area medial partright
Anterior hypothalamic area posterior partright
Anterior hypothalamic area properright
Anterior hypothalamic area ventral partright
Anterior hypothalamic area ventrolateralright
Anterior hypothalamic nucleus ventromedial partright
Periventricular hypothalamic nucleus [Anterior hypothalamic area]right
Anterior hypothalamic area rostral partright
Margins of central anterior hypothalamic arearight
Anterior hypothalamic area caudal partright
Anterior hypothalamic area around the fornixright
Anterior hypothalamic area around blood vesselsright
Anterior hypothalamic area middle partright
Anterior hypothalamic area dorsomedial partright
Anterior hypothalamic area rostrocaudal extentright
Anterior hypothalamic medial preoptic region medial portionright
Anterior hypothalamic area at the posterolateral border of the suprachiasmatic nucleusright
Anterior hypothalamic area lateral and dorsal to the suprachiasmatic nucleusright
Anterior hypothalamic area immediately caudal to the suprachiasmatic arearight
Retinorecipient anterior hypothalamic arearight
Anterior hypothalamic area anterodorsal condensationright

Output to

NameSideAbbr.WeightDetails
Central graycontraCG-0.5
Center of the dorsal central graycontraCGCD-0.5
Central gray dorsomedialcontraCGDM-0.5
Central gray lateral dorsal central partcontraCGLDc-0.5
Central gray lateral ventral partcontraCGVD-0.5
Central gray lateral ventral central partcontraCGVDc-0.5
Central gray pons partcontraCGP-0.5
Central gray dorsolateral peripheral partcontraCGDLp-0.5
Central gray dorsolateral central partcontraCGDLc-0.5
Central gray periventricular partcontraCGpv-0.5
Dorsolateral periaqueductal graycontraDLPAG1
Lateral periaqueductal graycontraLPAG2
Periaqueductal gray rostral partcontraPAGR-0.5
Periaqueductal gray rostral most partcontraPAGRmo3
Ventrolateral periaqueductal graycontraVLPAG1
Red nucleuscontraR0
Central tegmental fieldcontraTGAC-0.5
Ventral tegmental area A10contraVTA-0.5
Ventrolateral tegmental areacontraVLTg-0.5
Ventral tegmental nucleuscontraVTg0
Pedunculopontine tegmental nucleuscontraPPTg-0.5
A5 noradrenaline cellscontraA52
Locus coeruleuscontraLC-0.5
Cuneiforme nucleuscontraCnF-0.5
Parabrachial nucleuscontraPB1
Lateral parabrachial nucleuscontraLPB-0.5
Gigantocellular reticular nucleuscontraGi1
Medulla oblongatacontraMeOb0.5
Nucleus of the solitary tractcontraSol-0.5
Dorsal raphe nucleuscontraDR-0.5
Median raphe nucleuscontraMnR-0.5
Raphe magnus nucleuscontraRMg-0.5
Ventral lateral medulla oblongatacontraMVL-0.5
Caudal medulla oblongatacontraCMeOb-0.5
Paragigantocellular reticular nucleuscontraPGi-0.5
Inferior salivatory nucleuscontraIS1
Superior salivatory nucleuscontraSuS2
Median eminencecontraME-0.5
Median eminence ventral partcontraMEv-2
Diagonal band of BrocacontraDBB-0.5
Medial septal nucleuscontraMS-0.5
Substantia innominata pars subcommissuraliscontraSIsc-0.5
Substantia innominata sublenticular partcontraSIS-0.5
Lateral preoptic areacontraLPO-0.5
Medial preoptic areacontraMPA-0.5
Ventrolateral preoptic nucleuscontraVLPO-0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Dorsomedial hypothalamic nucleus non-compact partcontraDMHyncp-0.5
Lateral zonecontraLHA-0.5
Anterior hypothalamic areacontraAHA0
Anteroventral periventricular nucleus [Anterior hypothalamic area]contraAVPe0
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Arcuate nucleuscontraArc0.5
Paraventricular hypothalamic nucleuscontraPa3
Paraventricular hypothalamic nucleus parvocellular divisioncontraPavPo-0.5
Paraventricular nucleus medial partcontraPame0.5
Premammillary nucleus dorsal partcontraPMD3
Premammillary nucleus ventral partcontraPMV-0.5
Retrochiasmatic areacontraRCh0.5
Dorsochiasmatic areacontraDRCh2
Central medial thalamic nucleuscontraCM-0.5
Centrolateral thalamic nucleuscontraCL-0.5
Rhomboid thalamic nucleuscontraRh-0.5
Mediodorsal thalamic nucleuscontraMD-0.5
Paratenial thalamic nucleuscontraPT-0.5
Paraventricular thalamic nucleuscontraPV-0.5
Reuniens thalamic nucleuscontraRe-0.5
Zona incertacontraZI-0.5
Lateral habenular nucleuscontraLHb-0.5
Lateral habenular nucleus medial partcontraLHbM3
Pituitary glandcontraPIT2
RetinacontraRET2
Stria medullaris of the thalamuscontrasm-0.5
Amygdaloid complexcontraAC-0.5
Bed nucleus of the stria terminaliscontraBST-0.5
Bed nucleus of the stria terminalis intraamygdaloid divisioncontraBSTIA-0.5
Central amygdaloid nucleuscontraCe-0.5
Medial amygdaloid nucleuscontraMe-0.5
Amygdalohippocampal areacontraAHi-0.5
Field CA1 of hippocampuscontraCA1-0.5
Fornixcontraf0
Entorhinal cortexcontraEnt0.5
Infralimbic cortexcontraIL1
Precommissural nucleuscontraPrC-0.5
Intergeniculate leafcontraIGL-0.5
Septal regioncontraSER1
Lateral septal nucleus dorsal partcontraLSD-0.5
Lateral septal nucleus intermediate partcontraLSI-0.5
Lateral septal nucleus intermediate part ventral subdivisioncontraLSVIV-0.5
Dorsolateral subdivision of the lateral septal nucleus intermediate partcontraLSIDL-0.5
Dorsomedial subdivision of the lateral septal nucleus intermediate partcontraLSIDM-0.5
Lateral subdivision of the lateral septal nucleus intermediate partcontraLSIL-0.5
Medial subdivision of the lateral septal nucleus intermediate partcontraLSIm-0.5
Lateral septal nucleus ventral partcontraLSV-0.5
Stria terminaliscontrast-0.5
Cervical segmentscontraCSeg1
Cervical segment 7contraCS7-1
Lumbar segmentscontraLSeg0.5
Sacral segmentscontraSSeg1
Central grayipsiCG3
Central gray dorsal partipsiCGD-0.5
Center of the dorsal central grayipsiCGCD3
Central gray dorsal peripheral partipsiCGDp0
Central gray dorsomedialipsiCGDM3
Central gray lateral dorsal peripheral partipsiCGLDp0
Central gray lateral dorsal central partipsiCGLDc1
Central gray lateral ventral partipsiCGVD1
Central gray lateral ventral peripheral partipsiCGVDp0
Central gray lateral ventral central partipsiCGVDc1
Central gray medial partipsiCGMe1
Central grey periaqueductalipsiCGPAG-0.5
Central gray mesencephalic partipsiCGM3
Central gray mesencephalic part inferior colliculus levelipsiCGMinf1
Central gray mesencephalic part intercollicular levelipsiCGMint0.5
Central gray mesencephalic part superior colliculus levelipsiCGMsc2
Central gray mesencephalic part lateral borderipsiCGMLb-0.5
Central gray pons partipsiCGP2
Central gray dorsolateral peripheral partipsiCGDLp3
Central gray dorsolateral central partipsiCGDLc3
Central gray periventricular partipsiCGpv1
Periaqueductal grayipsiPAG-0.5
Dorsal periaqueductal grayipsiDPAG3
Dorsolateral periaqueductal grayipsiDLPAG2
Lateral periaqueductal grayipsiLPAG3
Periaqueductal gray caudal partipsiPAGc-0.5
Periaqueductal gray rostral partipsiPAGR3
Periaqueductal gray rostrolateral partipsiPAGRL1
Periaqueductal gray rostral most partipsiPAGRmo3
Ventral periaqueductal grayipsiVPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG1
Red nucleusipsiR1
Superior colliculusipsiSC-0.5
Tegmental areaipsiTGA-1
Central tegmental fieldipsiTGAC1
Parainterfascicular nucleus of the ventral tegmental areaipsiPIF3
Peduncularpontine nucleusipsiPPN-0.5
Rostromedial tegmental nucleusipsiRMTg1
Substantia nigra A9ipsiSN-0.5
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 caudal partipsiVTAcp1
Interfascicular nucleusipsiIF3
Ventral tegmental area rostral partipsiVTAR1
Ventral tegmental area anterior partipsiVTAA-0.5
Ventral tegmental area posterior partipsiVTAP-0.5
Parabrachial pigmented nucleusipsiPBP3
Paranigral nucleusipsiPN3
Caudal linear nucleus of the rapheipsiCLi2
Ventrolateral tegmental areaipsiVLTg1
Lateral tegmental areaipsiLTGA-0.5
Laterodorsal tegmental nucleusipsiLDTg-0.5
Ventral tegmental nucleusipsiVTg0
Dorsal tegmental nucleus ventromedial partipsiDTgVM1
Pedunculopontine tegmental nucleusipsiPPTg2
Paraflocculus ventral partipsiPFlv1
Anterior lobeipsiAnL1
FlocculusipsiFl1
A5 noradrenaline cellsipsiA53
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC1
Locus coeruleus caudal partipsiLCca1
Locus coeruleus coreipsiLCco3
Locus coeruleus rostral partipsiLCRo2
Pontine nucleiipsiPn-1
Mesencephalic reticular formationipsiMRF0
Cuneiforme nucleusipsiCnF2
Parabrachial nucleusipsiPB1
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Medullary reticular nucleus ventrolateral partipsiMdVL-0.5
Ventromedial medullary reticular formationipsiVMMdD-0.5
Medulla oblongataipsiMeOb1
Ambiguus nucleusipsiAmb-0.5
Trochlear nucleusipsi4-0.5
Nucleus of the solitary tractipsiSol3
Nucleus of the solitary tract adjacent to the nucleus nervi vagiipsiSola10-0.5
Dorsal motor nucleus of vagusipsi10-0.5
Raphe nucleiipsiRAN-0.5
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus median partipsiDRM2
Rostral linear nucleus of the rapheipsiRLi3
Median raphe nucleusipsiMnR2
Central raphe nucleus dorsal partipsiCRNdp2
Raphe magnus nucleusipsiRMg1
B9 serotonin cellsipsiB91
Ventral lateral medulla oblongataipsiMVL1
Caudal medulla oblongataipsiCMeOb1
Paragigantocellular reticular nucleusipsiPGi1
Inferior salivatory nucleusipsiIS1
Superior salivatory nucleusipsiSuS4
Basal forebrainipsiBAF-2
Median eminenceipsiME1
Median eminence external layeripsiMEeL-0.5
Median eminence ventral partipsiMEv-2
Diagonal band of BrocaipsiDBB2
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Medial septal nucleusipsiMS3
Substantia innominataipsiSI2
Substantia innominata anterior partipsiSIA1
Substantia innominata dorsal partipsiSID-0.5
Substantia innominata pars subcommissuralisipsiSIsc1
Substantia innominata posterior partipsiSIP1
Substantia innominata sublenticular partipsiSIS2
Substantia innominata ventral partipsiSIV1
Lateral preoptic areaipsiLPO3
Medial preoptic areaipsiMPA3
Magnocellular preoptic nucleusipsiMCPO1
Medial preoptic nucleusipsiMPO1
Median preoptic nucleusipsiMnPO3
Ventrolateral preoptic nucleusipsiVLPO2
Ventromedial preoptic nucleusipsiVMPO-2
Tuberomammillary nucleusipsiTuM3
Dorsal tuberomammillary nucleusipsiDTM1.5
Dense plexus engulfing the magnocellular neurons of the ventral tuberomammillary nucleusipsiVTMdpm3
Vascular organ of the lamina terminalisipsiVOLT-0.5
Dorsomedial hypothalamic nucleusipsiDMHy2
Dorsomedial hypothalamic nucleus non-compact partipsiDMHyncp4
Posterior region [Lateral division of the hypothalamus]ipsiPReg3
Preoptic anterior regionipsiPAreg-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC1
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR1
Lateral zoneipsiLHA2
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area anterior region ventral zoneipsiLHAanv-0.5
Lateral hypothalamic area juxtadorsomedial regionipsiJDM1
Lateral hypothalamic area medial partipsiLHAm3
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd1
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv2
Lateral hypothalamic area perifornical partipsiPFx3
Lateral hypothalamic nucleusipsiLHN-0.5
Tuberal region of lateral hypothalamusipsiTuLH2
Ventral segment of the tuberal region of lateral hypothalamusipsiTuLHv-0.5
Lateral hypothalamic area [Lateral zone tuberal level]ipsiLHtu0.5
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Mediobasal hypothalamusipsiMeHypo2.5
Medial division of the hypothalamusipsiMdH0.5
Anterior hypothalamic areaipsiAHA2
Anterior hypothalamic area posterior partipsiAHAP0
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe1.5
Anterior hypothalamic area caudal partipsiAHAca3
Anterior hypothalamic nucleusipsiAHn-0.5
Anterior hypothalamic nucleus rostral zoneipsiAHnR3
Dorsomedial hypothalamic areaipsiDMHyA1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus anterior partipsiDMA2
Dorsomedial hypothalamic nucleus ventral partipsiDMV-0.5
Ventral sections of the posterior dorsomedial nucleusipsiDMHpve2
Posterior hypothalamic areaipsiPHA-0.5
Posterior hypothalamic area dorsal partipsiPHD1
Midlateral posterior hypothalamic areaipsiPHAmL-0.5
Posterior hypothalamic nucleusipsiPH-0.5
Tuberal area ventral to the fornixipsiTAvf1
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus central partipsiVMHC2
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM3
Ventromedial hypothalamic nucleus medial partipsiVMHM1.5
Ventromedial hypothalamic nucleus rostral partipsiVMHR1.5
Perinuclear shell of the ventromedial hypothalamic nucleusipsiVMSp4
Ventromedial hypothalamic nucleus ventral partipsiVMHV-0.5
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL2
Nuclear core of the ventromedial hypothalamic nucleusipsiVMHnc3
Anterior periventricular nucleusipsiPeA0
Arcuate nucleusipsiArc3
Arcuate nucleus middle partipsiArcMi-0.5
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR2.5
Paraventricular hypothalamic nucleus lateral magnocellular part [Periventricular zone anterior region]ipsiPaLM3
Paraventricular hypothalamic nucleus posterior part [Periventricular zone anterior region]ipsiPaPo0.5
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP3
Paraventricular hypothalamic nucleus medial parvocellular partipsiMPPa2
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP3
Paraventricular nucleus of the hypothalamus magnocellular division anterior magnocellular partipsiPaAMa1
Paraventricular nucleus of the hypothalamus magnocellular division medial magnocellular partipsiPaAMm3
Paraventricular nucleus of the hypothalamus magnocellular division posterior magnocellular partipsiPaAMp1
Paraventricular hypothalamic nucleusipsiPa2
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag1
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP0
Paraventricular hypothalamic nucleus magnocellular division posterior part lateral zoneipsiPVHpml0.5
Paraventricular hypothalamic nucleus magnocellular division posterior part medial zoneipsiPVHpmm0
Paraventricular hypothalamic nucleus magnocellular division posterior part caudal levelipsiPaMagPC0.5
Paraventricular hypothalamic nucleus magnocellular division between PaLM and PaAMmipsiPaMagb-0.5
Paraventricular hypothalamic nucleus magnocellular division medial partipsiPaMagM0
Paraventricular hypothalamic nucleus anterior magnocellular divisionipsiPaMagA0
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo3
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD2
Paraventricular nucleus lateral parvocellular partipsiPaLp1
Paraventricular nucleus medial parvicellular part dorsal zoneipsiPVHmpdo1
Paraventricular nucleus medial parvocellular part ventral zoneipsiPaMepv1
Paraventricular hypothalamic nucleus parvocellular division posterior partipsiPavPoP3
Paraventricular hypothalamic nucleus parvocellular division lateroposterior subnucleiipsiPavPoLP0
Paraventricular hypothalamic nucleus anterior parvicellular subdivisionipsiaPavPo2
Paraventricular hypothalamic nucleus periventricular partipsiPapv2
Paraventricular hypothalamic nucleus rostral partipsiPaRo-0.5
Paraventricular nucleus anterior partipsiPaan1
Paraventricular nucleus dorsal most portionipsiPaDom1
Paraventricular nucleus dorsal edgeipsiPaDoE0.5
Paraventricular nucleus medial partipsiPame2
Paraventricular nucleus medial part at mid paraventricular hypothalamic nucleus levelipsiPamemi0.5
Paraventricular nucleus medial part at posterior paraventricular hypothalamic nucleus levelipsiPamepo0.5
Paraventricular hypothalamic nucleus dorsomedial capipsiPadmc-0.5
Mid paraventricular hypothalamic nucleusipsiMiPa-0.5
Paraventricular hypothalamic nucleus ventral to mid levelipsiPavmi-0.5
Peri-paraventricular hypothalamic nucleusipsiPPa1
Ventral perinuclear paraventricular hypothalamic areaipsiPPaV-0.5
Border of the posterior magnocellular and medial parvocellular subdivision at mid-level of the rostrocaudal extentipsiPabPmmp0.5
Suprachiasmatic nucleusipsiSCh2
Rostral part of suprachiasmatic nucleus ventrolateral partipsiSCnVLR2
Ventral supraoptic commissureipsivsox-2
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Supraoptic nucleus anterior divisionipsiSOA1
Supraoptic nucleus dorsal partipsiSOd1
Supraoptic nucleus posterior partipsiSOP1
Supraoptic nucleus ventral part [Supraoptic region]ipsiSOV1
Supraoptic nucleus vasopressin cellsipsiSOVa0
Supraoptic nucleus oxytocin cellsipsiSOo0
Mammillary bodyipsiCMAM-0.5
Medial mammillary nucleus lateral partipsiML-0.5
Premammillary nucleus dorsal partipsiPMD3
Premammillary nucleus ventral partipsiPMV2
Supramammillar nucleusipsiSuM3
Perifornical nucleusipsiPeF3
Periventricular fiber systemipsipv-2
Retrochiasmatic areaipsiRCh1.5
Retrochiasmatic area lateral partipsiRChL2
Dorsochiasmatic areaipsiDRCh3
Dorsal part of the lateral geniculate complexipsiLGd-1
Ventral part of the lateral geniculate complexipsiLGv-1
Intralaminar nuclei of the dorsal thalamusipsiILM1
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL1
Parafascicular thalamic nucleusipsiPF-0.5
Rhomboid thalamic nucleusipsiRh2
Mediodorsal thalamic nucleusipsiMD2
Midline group of the dorsal thalamusipsiMTN1
Paratenial thalamic nucleusipsiPT3
Paraventricular thalamic nucleusipsiPV3
Paraventricular thalamic nucleus posterior partipsiPVP-0.5
Reuniens thalamic nucleusipsiRe3
Reuniens thalamic nucleus caudomedial divisionipsiRecm2
Reunienes thalamic nucleus rostromedial divisionipsiRerm2
Reuniens thalamic nucleus rostrolateral divisionipsiRerl3
Subfornical organipsiSFO1
Ventral posterolateral thalamic nucleus caudal partipsiVPLca-0.5
Zona incertaipsiZI2
Zona incerta medial tipipsiZImt1
Lateral habenular nucleusipsiLHb3
Lateral habenular nucleus lateral partipsiLHbL1
Lateral habenular nucleus medial partipsiLHbM3
Pineal glandipsiPi-0.5
Pituitary glandipsiPIT2
Posterior lobe of pituitaryipsiPPit3
Medial forebrain bundleipsimfb-2
Stria medullaris of the thalamusipsism1
RetinaipsiRET1
Amygdaloid complexipsiAC2
Accessory basal nucleusipsiAB2
Basolateral amygdaloid nucleusipsiBL0.5
Anterior basolateral nucleusipsiBLA0.5
Posterior basolateral nucleusipsiBLP0.5
Posterior basomedial nucleusipsiBMP-0.5
Lateral amygdaloid nucleusipsiLA-0.5
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA2
Bed nucleus of the stria terminalis lateral divisionipsiBSTL-0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM-0.5
Bed nucleus of the stria terminalis posterior divisionipsiBSTP2
Central amygdaloid nucleusipsiCe2
Anterodorsal partipsiCeMad-0.5
Central division of sublenticular extended amygdalaipsiSLEAc-0.5
Medial division of the sublenticular extended amygdalaipsiSLEAm-0.5
Amygdalopiriform transition areaipsiAPir-0.5
Anterior amygdaloid areaipsiAA-0.5
Anterior cortical amygdaloid nucleusipsiACo-0.5
Periamygdaloid complexipsiPAC2
Medial amygdaloid nucleusipsiMe2
Amygdalohippocampal areaipsiAHi2
Subthalamic nucleusipsiSTh2
Dentate gyrusipsiDG-0.5
Field CA1 of hippocampusipsiCA12
Subiculum ventral partipsiSv-0.5
Ventral hippocampusipsiHIPPv-0.5
Fornixipsif-2
ParasubiculumipsiPaS-0.5
Entorhinal cortexipsiEnt1
Lateral entorhinal cortexipsiLEnt-0.5
Medial entorhinal cortexipsiMEnt-0.5
Retrosplenial cortexipsiRSCx-0.5
Anterior cingulate cortexipsiACC-0.5
Posterior cingulate cortexipsiPCC-0.5
Infralimbic cortexipsiIL1
Insular cortexipsiICX-0.5
Lateral neocortexipsiLCX2
Medial prefrontal cortexipsimPFC0
Precommissural nucleusipsiPrC2
Intergeniculate leafipsiIGL-0.5
Interpeduncular nucleus rostral subnucleus central partipsiIPRce1
Septal regionipsiSER4
Lateral septal nucleusipsiLS3
Lateral septal nucleus dorsal partipsiLSD1
Lateral septal nucleus intermediate partipsiLSI3
Lateral septal nucleus intermediate part ventral subdivisionipsiLSVIV2
Dorsolateral subdivision of the lateral septal nucleus intermediate partipsiLSIDL3
Dorsomedial subdivision of the lateral septal nucleus intermediate partipsiLSIDM1
Lateral subdivision of the lateral septal nucleus intermediate partipsiLSIL2
Medial subdivision of the lateral septal nucleus intermediate partipsiLSIm3
Lateral septal nucleus ventral partipsiLSV4
Septohypothalamic nucleusipsiSHy4
Ventral medial septumipsiVMSe3
Stria terminalisipsist3
Spinal cordipsiMES0
Cervical segmentsipsiCSeg1
Cervical segment 7ipsiCS7-1
Intermediolateral cell column T1ipsiIMLT10
Intermediolateral cell column T2ipsiIMLT20
Intermediolateral cell column T3ipsiIMLT30
Intermediolateral cell column T4ipsiIMLT40
Intermediolateral cell column T5ipsiIMLT50
Intermediolateral cell column T6ipsiIMLT60
Intermediolateral cell column T7ipsiIMLT70
Intermediolateral cell column T8ipsiIMLT80
Intermediolateral cell column T9ipsiIMLT90
Intermediolateral cell column T10ipsiIMLT100
Intermediolateral cell column T11ipsiIMLT110
Intermediolateral cell column T12ipsiIMLT120
Intermediolateral cell column T13ipsiIMLT130
Lumbar segmentsipsiLSeg0.5
Lumbar segment 6ipsiL63
Sacral segmentsipsiSSeg0.5
Sacral segment 1ipsiSa13
Liver sideipsiOrgsLivs-0.5
Liver lobeipsiOrgsLivL2
Mammary glandcontraOrgMamG-0.5
OvarycontraOrgOvar-0.5
KidneycontraOrgsKid1
Adrenal glandipsiADRE-0.5
Thyroid glandipsiOrgThyroid2
Orbicularis oculi muscleipsiMuscOrbOc-0.5
Gastrocnemius muscleipsiMuscGC-10
Lumbar epaxial musclesipsiMuscLep-0.5
Bulbocavernosus muscleipsiMuscBCV-10
Bulbospongiosus muscleipsiMuscbsp1
Ischiocavernosus muscleipsiMuscicav-10
Musculus levator aniipsiMuscLevAn1
Mammary glandipsiOrgMamG2
OvaryipsiOrgOvar1
Epididymis caudaipsiOrgEpiCau2
ProstateipsiOrgProst-0.5
KidneyipsiOrgsKid1

Input from

NameSideAbbr.WeightDetails
Central graycontraCG0.5
Central gray lateral partcontraCGL0.5
Central gray mesencephalic partcontraCGM-0.5
Periaqueductal graycontraPAG1
Dorsal periaqueductal gray caudal partcontraDPAGC0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0.5
Dorsolateral periaqueductal gray rostral partcontraPAGdlr0.5
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0.5
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0.5
Commissural nucleus of the inferior colliculuscontraCom1
Interstitial nucleus of CajalcontraInC1
Interposed cerebellar nucleicontraICN0
Lateral cerebellar nucleuscontraCERL0
Medial cerebellar nucleuscontraMed0
Locus coeruleuscontraLC1
Lateral parabrachial nucleuscontraLPB1
Lateral reticular nucleuscontraLRt1
Principal sensory trigeminal nucleuscontraPr52
Spinal trigeminal nucleus interpolar partcontraSp5I2
Spinal trigeminal nucleus oral partcontraSp5O2
Trigeminal subnucleus caudaliscontra5SSC2
Nucleus of the solitary tractcontraSol1
Dorsal raphe nucleus caudal partcontraDRC2.5
Rostral ventrolateral medullacontraRVLM-0.5
Caudoventral reticular nucleuscontraCVL-0.5
Lateral paragigantocellular nucleuscontraLPGi0.5
Medial septal nucleuscontraMS-2
Medial preoptic areacontraMPA0.5
Caudal pole of medial preoptic areacontraMPAc1
Magnocellular preoptic nucleuscontraMCPO0
Tuberomammillary nucleuscontraTuM2
Tuberomammillary nucleus medial partcontraTuMM2
Dorsomedial hypothalamic nucleuscontraDMHy0.5
Lateral hypothalamic areacontraLH0
Anterior hypothalamic areacontraAHA0
Anterior hypothalamic area immediately caudal to the suprachiasmatic areacontraAHAcSCh-0.5
Parastriatal nucleuscontraPS0.5
Subparaventricular zonecontraSuPZ-0.5
Ventromedial hypothalamic nucleuscontraVMH1
Ventromedial hypothalamic nucleus anterior partcontraVMHA0
Ventromedial hypothalamic nucleus central partcontraVMHC1
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL1
Ventromedial hypothalamic nucleus ventromedial partcontraVMHvm1
Arcuate nucleus parts part 2contraArcPaP20
Arcuate nucleus parts part 3contraArcPaP30.5
Arcuate nucleus parts part 4contraArcPaP40.5
Arcuate nucleus parts part 5contraArcPaP50
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contravPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAPav-0.5
Paraventricular hypothalamic nucleuscontraPa0
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleuscontraPVPapvA-0.5
Preoptic periventricular nucleuscontraPePO-0.5
Suprachiasmatic nucleuscontraSCh3
Suprachiasmatic nucleus dorsal divisioncontraSChd-0.5
Suprachiasmatic nucleus dorsomedial partcontraSCnDM-0.5
Suprachiasmatic nucleus ventral divisioncontraSChv1
Suprachiasmatic nucleus ventrolateral partcontraSCnVL-0.5
Region dorsal to suprachiasmatic nucleuscontraSChDT-0.5
Suprachiasmatic preoptic nucleuscontraPSCh-0.5
Supraoptic nucleus [Supraoptic region]contraSO-0.5
Incerto hypothalamic areacontraicHYPO-0.5
Lateral mammillary nucleuscontraLM0
Premammillary nucleuscontraPMAN0
Supramammillar nucleuscontraSuM0.5
Perifornical nucleuscontraPeF-0.5
Retrochiasmatic area immediately caudal to the suprarchiasmatic areacontraRChcSCh-0.5
RetinacontraRET3
Basomedial amygdaloid nucleuscontraBM0
Bed nucleus of the stria terminaliscontraBST0
Anterior cortical amygdaloid nucleuscontraACo0
Medial amygdaloid nucleuscontraMe0.5
Medial amygdaloid nucleus posteroventral partcontraMePV1
Field CA1 of hippocampus temporal polecontraCA1tp0
Subiculum ventral partcontraSv-0.5
Lateral septal nucleuscontraLS0.5
Lateral septal nucleus dorsal partcontraLSD-2
Lateral septal nucleus intermediate partcontraLSI-2
Lateral septal nucleus ventral partcontraLSV-2
Anteroposterior extension of the lateral septal nucleuscontraLSap-2
Ventroposterior extension of the lateral septal nucleuscontraLSvp-2
Area X C1contraSCL10C12
Spinal cord layer 3 C1contraSCL3C12
Spinal cord layer 4 C1contraSCL4C12
Spinal cord layer 1 C1contraSCL1C12
Spinal cord layer 2 C1contraSCL2C12
Area X C2contraSCL10C22
Spinal cord layer 3 C2contraSCL3C22
Spinal cord layer 4 C2contraSCL4C22
Spinal cord layer 1 C2contraSCL1C22
Spinal cord layer 2 C2contraSCL2C22
Central grayipsiCG1
Central gray lateral partipsiCGL1
Central gray ventral marginipsiCGvam-0.5
Central gray mesencephalic partipsiCGM1
Central gray pons partipsiCGP1
Periaqueductal grayipsiPAG2
Dorsal periaqueductal grayipsiDPAG3
Dorsal periaqueductal gray caudal partipsiDPAGC3
Dorsolateral periaqueductal grayipsiDLPAG3
Dorsolateral periaqueductal gray caudal partipsiPAGdlc2
Dorsolateral periaqueductal gray rostral partipsiPAGdlr3
Periaqueductal gray caudal dorsolateral partipsiPAGLDC2
Periaqueductal gray rostrocaudal extentipsiPAGroe3
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0.5
Ventrolateral periaqueductal gray rostral partipsiPAGvlr2
Ventral peripeduncular periaqueductal grayipsiVPPAG-0.5
Commissural nucleus of the inferior colliculusipsiCom2
Central tegmental fieldipsiTGAC-1
Substantia nigra A9ipsiSN-1
Ventral tegmental area A10ipsiVTA-1
Peripeduncular areaipsiPPA-0.5
Peripeduncular nucleusipsiPP2
Retrorubral nucleusipsiRR-1
Dorsal tegmental nucleus lateral partipsiDLTN1
Pedunculopontine tegmental nucleus pars compactaipsiPPNC-1
Edinger Westphal nucleusipsiEW2
Interstitial nucleus of CajalipsiInC1
Interposed cerebellar nucleiipsiICN0
Lateral cerebellar nucleusipsiCERL0
Medial cerebellar nucleusipsiMed0
Barringtons nucleusipsiBar-0.5
Locus coeruleusipsiLC3
Locus coeruleus cell body regionipsiLCcB3
Locus coeruleus anterior partipsiLCa3
Extreme dorsal edge of the locus coeruleusipsiEDLC0
Central position of the compact dorsal locus coeruleusipsiLCCCD3
Locus coeruleus posterior partipsiLCp1
Locus coeruleus ventral partipsiLCv1
Locus coeruleus ventromedial partipsiVMLC0
Nucleus incertusipsiNI1
Nucleus incertus pars compactaipsiNIc3
Reticular systemipsiRF0.5
Mesencephalic reticular formationipsiMRF1
Cuneiforme nucleusipsiCnF1
Parabrachial nucleusipsiPB1
Lateral parabrachial nucleusipsiLPB2
Lateral parabrachial nucleus superior partipsiLPBS3
Parabrachial nucleus rostral partipsiPBro-1
Lateral reticular nucleusipsiLRt3
Subcoeruleus nucleusipsiSubC0
Principal sensory trigeminal nucleusipsiPr52
Spinal trigeminal nucleus interpolar partipsiSp5I2
Spinal trigeminal nucleus oral partipsiSp5O2
Trigeminal subnucleus caudalisipsi5SSC2
Nucleus of the solitary tractipsiSol3
Raphe nucleiipsiRAN-0.5
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC3
Dorsal raphe nucleus middle part lateral regionipsiDRmiL0.5
Dorsal raphe nucleus middle part shell regionipsiDRsh3
Dorsal raphe nucleus middle part ventral regionipsiDRmiV2
Median raphe nucleusipsiMnR1
Central raphe nucleusipsiCRN-1
Superior central raphe nucleusipsiCS1.5
Raphe magnus nucleusipsiRMg-0.5
Rostral ventrolateral medullaipsiRVLM-0.5
A1 noradrenergic cellsipsiA1-0.5
A2 noradrenergic cellsipsiA2-0.5
Caudoventral reticular nucleusipsiCVL-0.5
Lateral paragigantocellular nucleusipsiLPGi2
Median eminenceipsiME-2
Diagonal band of BrocaipsiDBB1
Medial septal nucleusipsiMS1
Medial septal nucleus mid-dorsal aspectipsiMSmda-0.5
Substantia innominataipsiSI1
Substantia innominata dorsal partipsiSID-0.5
Substantia innominata ventral partipsiSIV2
Medial tuberal nucleusipsiMTuN-0.5
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA3
Medial preoptic area dorsolateral partipsiMPADL2
Magnocellular preoptic nucleusipsiMCPO0.5
Medial preoptic nucleusipsiMPO3
Tuberomammillary nucleusipsiTuM3
Tuberomammillary nucleus medial partipsiTuMM3
Dorsomedial hypothalamic nucleusipsiDMHy3
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC1
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR2
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar0.5
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR0.5
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp2
Lateral zoneipsiLHA2
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area anteriorposterior partipsiLHapo2
Lateral hypothalamic area juxtadorsomedial regionipsiJDM2
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm2
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd1
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv1
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa1
Lateral hypothalamic area perifornical partipsiPFx1
Lateral hypothalamic area posterior partipsiLHAp2
Tuberal region of lateral hypothalamusipsiTuLH-0.5
Tuberal division of the lateral hypothalamic areaipsiLHTC-0.5
Tuberal division of the lateral hypothalamic area posterolateral partipsiLHTCPL-0.5
Tuberal division of the lateral hypothalamic area medial partipsiLHTCM-0.5
Caudomedial hypothalamusipsiCMdH-0.5
Anterior hypothalamic areaipsiAHA2
Anterior hypothalamic area central partipsiAHAC3
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe-0.5
Anterior hypothalamic area rostrocaudal extentipsiAHArc3
Anterior hypothalamic area at the posterolateral border of the suprachiasmatic nucleusipsiAHApLSCh0
Anterior hypothalamic area immediately caudal to the suprachiasmatic areaipsiAHAcSCh-0.5
Anterior part of the anterior hypothalamic nucleusipsiAHna3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Parastriatal nucleusipsiPS1.5
Posterior hypothalamic areaipsiPHA3
Subparaventricular zoneipsiSuPZ-0.5
Lateral part of ventral subparaventricular zoneipsiSuPZvL3
Subparaventricular zone ventromedial partipsiSuPZvm3
Subparaventricular zone dorsomedial partipsiSuPZdm1.5
Subparaventricular zone dorsolateral partipsiSuPZdL4
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus anterior partipsiVMHA1
Ventromedial hypothalamic nucleus central partipsiVMHC4
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM3
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL4
Ventromedial hypothalamic nucleus ventromedial partipsiVMHvm3
Arcuate nucleusipsiArc0.5
Arcuate nucleus parts part 2ipsiArcPaP21
Arcuate nucleus parts part 3ipsiArcPaP31
Arcuate nucleus parts part 4ipsiArcPaP41
Arcuate nucleus parts part 5ipsiArcPaP51
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsivPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAPav-0.5
Perichiasmatic regionipsiPeCC3
Paraventricular hypothalamic nucleusipsiPa1.5
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleusipsiPVPapvA-0.5
Preoptic periventricular nucleusipsiPePO-0.5
Suprachiasmatic nucleusipsiSCh3
Suprachiasmatic nucleus caudal partipsiSChC0.5
Suprachiasmatic nucleus dorsal divisionipsiSChd-0.5
Suprachiasmatic nucleus dorsomedial partipsiSCnDM1
Suprachiasmatic nucleus rostral part of the lateral divisionipsiSChrL1
Suprachiasmatic nucleus ventral divisionipsiSChv3
Suprachiasmatic nucleus ventrolateral partipsiSCnVL2
Mid suprachiasmatic nucleus ventrolateral partipsiMSCnVL1
Region dorsal to suprachiasmatic nucleusipsiSChDT-0.5
Area surrounding the suprachiasmatic nucleusipsiSChsu3
Suprachiasmatic preoptic nucleusipsiPSCh-0.5
Supraoptic nucleus [Supraoptic region]ipsiSO1.5
Incerto hypothalamic areaipsiicHYPO-2
Lateral mammillary nucleusipsiLM0
Premammillary nucleusipsiPMAN1
Supramammillar nucleusipsiSuM1.5
Perifornical nucleusipsiPeF-0.5
Retrochiasmatic area lateral partipsiRChL3
Retrochiasmatic area anterior partipsiRChA-0.5
Retrochiasmatic area immediately caudal to the suprarchiasmatic areaipsiRChcSCh-0.5
Rhomboid thalamic nucleusipsiRh1.5
Subfornical organipsiSFO3
Posterior intralaminar thalamic nucleusipsiPIL3
Subparafascicular thalamic nucleusipsiSPF3
Subparafascicular thalamic nucleus rostral partipsiSPFr2
Zona incertaipsiZI-0.5
Zona incerta medial partipsiZIm3
Internal capsuleipsiic-2
RetinaipsiRET2
Retinal ganglion cellsipsiRETg3
Amygdaloid complexipsiAC0.5
Accessory basal nucleusipsiAB2
Basolateral amygdaloid nucleusipsiBL0.5
Basomedial amygdaloid nucleusipsiBM1.5
Anterior basomedial nucleusipsiBMA1
Posterior basomedial nucleusipsiBMP-0.5
Lateral amygdaloid nucleusipsiLA0
Bed nucleus of the stria terminalisipsiBST0.5
Bed nucleus of the stria terminalis anterior divisionipsiBSTA2.5
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm2
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM2
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL-0.5
Bed nucleus of the stria terminalis medial division posteromedial partipsiBSTMPM-0.5
Bed nucleus of the stria terminalis posterior divisionipsiBSTP-0.5
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd3
Bed nucleus of the stria terminalis ventral tipipsiBNSTvt2
Central amygdaloid nucleusipsiCe2
Central amygdaloid nucleus lateral divisionipsiCeL0
Central amygdaloid nucleus medial divisionipsiCeM1
Anterior amygdaloid area dorsal partipsiAAD-0.5
Cortical amygdaloid nucleusipsiCAn0.5
Anterior cortical amygdaloid nucleusipsiACo1
Posterior amygdaloid nucleusipsiCOAp0
Nucleus of the lateral olfactory tractipsiLOT0.5
Medial amygdaloid nucleusipsiMe3
Medial amygdaloid nucleus caudal partipsiMeC1
Medial amygdaloid nucleus posterodorsal partipsiMePD1
Medial amygdaloid nucleus posteroventral partipsiMePV3
Medial amygdaloid nucleus rostral partipsiMeRo1
Amygdalohippocampal areaipsiAHi1
Posteromedial cortical nucleusipsiPMCo1
Globus pallidusipsiGP0
Accumbens nucleusipsiAc1
Caudate putamenipsiCPu0
Subthalamic nucleusipsiSTh1
Subthalamic nucleus medial partipsiSThM2
Field CA1 of hippocampus temporal poleipsiCA1tp-0.5
Field CA1 of hippocampus ventral poleipsiCA1vp1
Subiculum dorsal partipsiSd2.5
Subiculum dorsal distal partipsiSdd1
Subiculum dorsal proximal partipsiSdp1
Dorsal subiculum medial partipsiSdMe1
Subiculum ventral partipsiSv3
Subiculum ventral part caudal subdivisionipsiSvc3
Midmediolateral caudal part of the ventral subiculumipsiSvcMM2
Ventral subiculum rostromedial partipsiSvrm3
PresubiculumipsiPrS0
ParasubiculumipsiPaS0
Anterior cingulate cortexipsiACC1
Prelimbic cortexipsiPrL3
Prelimbic cortex caudal partipsiPrLc2
Prelimbic cortex rostral partipsiPrLr1
Infralimbic cortexipsiIL3
Agranular insular cortex dorsal partipsiAID0.5
Dorsal peduncular cortexipsiDP1
Primary somatosensory cortexipsiS10
Dorsolateral orbital cortexipsiDLO0.5
Intergeniculate leafipsiIGL2
Septal regionipsiSER-2
Lateral septal nucleusipsiLS3
Lateral septal nucleus caudal partipsiLSc-0.5
Lateral septal nucleus dorsal partipsiLSD-0.5
Lateral septal nucleus intermediate partipsiLSI-2
Lateral septal nucleus medial partipsiLSM3
Lateral septal nucleus rostral part dorsolateral zoneipsiLSrdl3
Ventrally lateral septal nucleus rostral part medial zoneipsiLSrmV-0.5
Lateral septal nucleus ventral partipsiLSV1
Lateral septal nucleus ventrolateral partipsiLSvl3
Anteroposterior extension of the lateral septal nucleusipsiLSap-2
Ventroposterior extension of the lateral septal nucleusipsiLSvp-2
Septofimbrial nucleusipsiSFi1
Ventrolateral septal regionipsiVLSER-0.5
Stria terminalisipsist-2
Area X C1ipsiSCL10C11
Spinal cord layer 3 C1ipsiSCL3C11
Spinal cord layer 4 C1ipsiSCL4C12
Spinal cord layer 1 C1ipsiSCL1C12
Spinal cord layer 2 C1ipsiSCL2C12
Area X C2ipsiSCL10C21
Spinal cord layer 3 C2ipsiSCL3C21
Spinal cord layer 4 C2ipsiSCL4C22
Spinal cord layer 1 C2ipsiSCL1C22
Spinal cord layer 2 C2ipsiSCL2C22
Thoracal segment 6ipsiT60.5
Thoracal segment 7ipsiT70.5
Thoracal segment 8ipsiT80.5
Thoracal segment 9ipsiT90.5
Lumbar segment 6ipsiL60
Trachea sidecontraOrgsTras1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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