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Rat connectome



Lateral habenular nucleus right


Abbreviation
LHb
Color       
Superior regionsHabenula

SynonymsAbbr.Language
Lateral habenular complexLH 
Lateral habenula nucleus  
Lateral habenular area  
Epithalamic lateral nucleus of the habenula Eng
 LHabEng
Lateral habenula Eng
Nucleus habenularis lateralis Eng
Lateral habenular nucleusLHbEng

SubregionsSide
Lateral habenular nucleus central partright
Lateral habenular nucleus lateral partright
Lateral habenular nucleus medial partright
Lateral habenular nucleus posterior halfright
Lateral habenular nucleus ventral partright
Lateral habenular nucleus caudal subfieldright
Lateral habenular nucleus rostral partright
Lateral habenular nucleus oval subnucleusright
Lateral habenular nucleus ventrolateral partright
Medio lateral habenular nucleusright

Output to

NameSideAbbr.WeightDetails
MesencephaloncontraMEC2
Central gray ventral areacontraCGva0.5
Nuclei of the lateral lemniscuscontraNLL0.5
Periaqueductal graycontraPAG3
Lateral periaqueductal graycontraLPAG1
Periaqueductal gray medial partcontraPAGm1
Periaqueductal gray rostral partcontraPAGR-0.5
Red nucleuscontraR2
Tegmental areacontraTGA2
Central tegmental field dorsal partcontraTGACd1
Midbrain extrapyramidal areacontraMEA2
Rostromedial tegmental nucleuscontraRMTg1
Ventral tegmental area A10contraVTA3
Ventral tegmental area posterior partcontraVTAP-0.5
Ventral tegmental area A10 rostral linear nucleuscontraVTARLi-0.5
Caudal linear nucleus of the raphecontraCLi-0.5
Lateral tegmental nucleuscontraLTN3
Laterodorsal tegmental nucleuscontraLDTg2
Ventral tegmental nucleuscontraVTg3
Dorsal tegmental nucleuscontraDTg3
Pedunculopontine tegmental nucleuscontraPPTg1
Locus coeruleuscontraLC1
Nucleus incertus pars dissipatacontraNId2
Pontine tegmental fieldcontraPTF0
Pontine nucleicontraPn2
Pontine reticular nucleuscontraPRN3
Parabrachial nucleuscontraPB0
Lateral parabrachial nucleuscontraLPB0.5
Raphe nucleicontraRAN3
Dorsal raphe nucleuscontraDR3
Linear nucleus of the raphecontraLIR-0.5
Median raphe nucleuscontraMnR4
Pontine raphe nucleuscontraPnR0
Raphe magnus nucleuscontraRMg0
Dorsomedial hypothalamic nucleuscontraDMHy1
Dorsomedial hypothalamic nucleus non-compact partcontraDMHyncp-0.5
Lateral zonecontraLHA1
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Posterior hypothalamic areacontraPHA1
Supramammillar nucleuscontraSuM0.5
A8 dopamine cells retrorubral groupcontraRRF0
Dorsochiasmatic areacontraDRCh2
Central medial thalamic nucleuscontraCM-0.5
Submedius thalamic nucleuscontraSub1
Ventromedial thalamic nucleus caudal partcontraVMc-0.5
Ventromedial thalamic nucleus caudal two thirdscontraVMctt-0.5
Subparafascicular thalamic nucleus caudal partcontraSPFc0.5
Subparafascicular thalamic nucleus medial partcontraSPFme0.5
Subparafascicular thalamic nucleus rostral partcontraSPFr0.5
Basal nucleus ventral divisoncontraBncV-0.5
Cerebral cortexcontraCEC0
Interpeduncular nucleuscontraIP1
Interpeduncular nucleus apical subnucleuscontraIPA2.5
Interpeduncular nucleus caudal subnucleuscontraIPC2.5
Interpeduncular nucleus central subnucleuscontraIPRc2.5
Interpeduncular nucleus dorsal subnucleuscontraIPRd2.5
Interpeduncular nucleus dorsolateral partcontraIPRdL0.5
Interpeduncular nucleus intermediate subnucleuscontraIPI2.5
Interpeduncular nucleus lateral subnucleuscontraIPL2.5
Interpeduncular nucleus rostrolateral subnucleuscontraIPRL-0.5
Interpeduncular nucleus perivascular zonecontraIPpz1
MesencephalonipsiMEC2
Central gray lateral ventral partipsiCGVD3
Central gray ventral areaipsiCGva2
Central grey caudal areaipsicCG2
Central gray mesencephalic part inferior colliculus levelipsiCGMinf0.5
Central gray mesencephalic part intercollicular levelipsiCGMint1
Central gray mesencephalic part superior colliculus levelipsiCGMsc1
Fasciculus retroflexusipsifr-2
Nuclei of the lateral lemniscusipsiNLL0.5
Periaqueductal grayipsiPAG3
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray medial partipsiPAGm1
Periaqueductal gray rostral partipsiPAGR3
Ventrolateral periaqueductal grayipsiVLPAG3
Red nucleusipsiR3
Superior colliculusipsiSC1
Tegmental areaipsiTGA2
Central tegmental field dorsal partipsiTGACd1
Mesopontine tegmental area rostromedial partipsiTGAmRM-0.5
Midbrain extrapyramidal areaipsiMEA4
Rostromedial tegmental nucleusipsiRMTg3
Substantia nigra A9ipsiSN1
Substantia nigra compact partipsiSNC3
Substantia nigra lateral partipsiSNL-0.5
Substantia nigra reticular partipsiSNR-0.5
Ventral tegmental area A10ipsiVTA4
Ventral tegmental area A10 caudal partipsiVTAcp2
Interfascicular nucleusipsiIF1
Ventral tegmental area A10 middle thirdipsiVTAmit-0.5
Ventral tegmental area A10 parabrachial divisionipsiVTApb2
Ventral tegmental area A10 paranigral divisionipsiVTApn2
Ventral tegmental area A10 rostrocaudal partipsiVTArc2
Ventral tegmental area rostral partipsiVTAR2
Ventral tegmental tailipsiVTTa-0.5
Ventral tegmental area posterior partipsiVTAP1
Ventral tegmental area A10 rostral linear nucleusipsiVTARLi-0.5
Parabrachial pigmented nucleusipsiPBP-0.5
Paranigral nucleusipsiPN-0.5
Caudal linear nucleus of the rapheipsiCLi1
Retrorubral nucleusipsiRR-0.5
Middle part of the retrorubral fieldipsiRRmi2
Lateral tegmental nucleusipsiLTN3
Laterodorsal tegmental nucleusipsiLDTg3
Ventral tegmental nucleusipsiVTg4
Dorsal tegmental nucleusipsiDTg3
Dorsal tegmental nucleus central partipsiDTgC1
Dorsal tegmental nucleus ventromedial partipsiDTgVM2
Pedunculopontine tegmental nucleusipsiPPTg1
Pedunculopontine tegmental nucleus pars compactaipsiPPNC3
Barringtons nucleusipsiBar0.5
Locus coeruleusipsiLC2
Pericoerulear regionipsiPCR0.5
Nucleus incertusipsiNI-0.5
Pontine tegmental fieldipsiPTF0
Dorsomedial tegmental areaipsiDMTg-0.5
Pontine nucleiipsiPn3
Reticular systemipsiRF0
Mesencephalic reticular formationipsiMRF0
Deep mesencephalic nucleusipsiDpMe1
Pontine reticular nucleusipsiPRN3
Pontine reticular nucleus oral partipsiPnO3
Parabrachial nucleusipsiPB1
Lateral parabrachial nucleusipsiLPB1
Gigantocellular reticular nucleus alpha partipsiGiA0.5
Parvicellular reticular nucleusipsiPCRt0.5
MyelencephalonipsiMYC3
Mesencephalic trigeminal nucleusipsiMe50.5
Mesencephalic trigeminal nucleus medial partipsiperiMe51
Raphe nucleiipsiRAN3
Dorsal raphe nucleusipsiDR4
Dorsal raphe nucleus dorsal partipsiDRD2
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm3
Dorsal raphe nucleus dorsomedian partipsiDRdmm3
Dorsal raphe nucleus lateral wingipsiDRlw2
Dorsal raphe nucleus median partipsiDRM-0.5
Dorsal raphe nucleus caudal midlineipsiDRcmip3
Dorsal raphe nucleus ventral partipsiDRV2
Dorsal raphe nucleus ventrolateral partipsiDRVL2
Dorsal raphe nucleus ventromedial subdivisionipsiDRvme2
Rostral linear nucleus of the rapheipsiRLi-0.5
Median raphe nucleusipsiMnR4
Paramedian raphe nucleusipsiPMnR3
Pontine raphe nucleusipsiPnR1
Raphe magnus nucleusipsiRMg0
Raphe magnus nucleus caudal partipsiRMgc1
Raphe magnus nucleus rostral partipsiRMgR1
Raphe pallidus nucleusipsiRPa0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Medial septal nucleusipsiMS-0.5
Basal nucleus Meynert medial partipsiBmp2
Substantia innominataipsiSI1
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA-0.5
Magnocellular preoptic nucleusipsiMCPO3
Medial preoptic nucleusipsiMPO0
Ventrolateral preoptic nucleusipsiVLPO1
Ventromedial preoptic nucleusipsiVMPO-0.5
Dorsomedial hypothalamic nucleusipsiDMHy2
Dorsomedial hypothalamic nucleus non-compact partipsiDMHyncp1
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral zoneipsiLHA2
Lateral hypothalamic areaipsiLH-0.5
Lateral hypothalamic area caudal partipsiLHc1
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0.5
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0.5
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Lateral hypothalamic area [Lateral zone mammillary level]ipsiLHLZM1
Lateral hypothalamic area [Lateral zone tuberal level]ipsiLHtu1
Lateral hypothalamic area at the level of the caudal half to the ventromedial hypothalamic nucleusipsiLHAaCVMH1
Medial division of the hypothalamusipsiMdH0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Posterior hypothalamic areaipsiPHA2
Midlateral posterior hypothalamic areaipsiPHAmL-0.5
Suprachiasmatic nucleusipsiSCh2
Nucleus properipsiSOnP1
Mammillary bodyipsiCMAM0
Supramammillar nucleusipsiSuM3
A8 dopamine cells retrorubral groupipsiRRF1
A8 dopamine cells retrorubral group lateral partipsiRRFL2
A8 dopamine cells retrorubral group medial partipsiRRFm3
Dorsochiasmatic areaipsiDRCh3
Central medial thalamic nucleusipsiCM2
Parafascicular thalamic nucleusipsiPF-0.5
Mediodorsal thalamic nucleusipsiMD2
Intermediodorsal thalamic nucleusipsiIMD2
Mediodorsal thalamic nucleus lateral partipsiMDL2
Mediodorsal thalamic nucleus medial partipsiMDM-10
Mediodorsal thalamic nucleus posterior partipsiMDP2
Submedius thalamic nucleusipsiSub2
Submedius thalamic nucleus lateral partipsiSubL2
Submedius thalamic nucleus posterior partipsiSubPo2
Paraventricular thalamic nucleusipsiPV2
Reuniens thalamic nucleusipsiRe-0.5
Reuniens thalamic nucleus caudomedial divisionipsiRecm2
Reunienes thalamic nucleus rostromedial divisionipsiRerm1
Reuniens thalamic nucleus rostrolateral divisionipsiRerl1
Ventrolateral thalamic nucleusipsiVL0
Ventromedial thalamic nucleusipsiVM-0.5
Ventromedial thalamic nucleus caudal partipsiVMc-0.5
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt-0.5
Ventromedial part of the ventromedial thalamic nucleusipsiVMVM-0.5
Reticular thalamic nucleus rostral partipsiRtr3
Subparafascicular thalamic nucleus caudal partipsiSPFc2
Subparafascicular thalamic nucleus medial partipsiSPFme1
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Ventral medial nucleus of the thalamusipsiVMT-0.5
Zona incertaipsiZI1
Forel field H1ipsiFFH11
Forel field H2ipsiFFH21
Lateral habenular nucleusipsiLHb1
Lateral habenular nucleus lateral partipsiLHbL1
Medial forebrain bundleipsimfb-0.5
Medial forebrain bundle at the level of the anterior commissureipsimfbac-2
Medial forebrain bundle at the level of the lateral preoptic areraipsimfbLpa-2
Medial forebrain bundle at the level of the anterior hypothalamic nucleusipsimfbahn-2
Medial forebrain bundle at the level of the lateral hypothalamusipsimfbLH0
Medial forebrain bundle at the level of the posterior hypothalamic nucleusipsimfbPH0
Medial lemniscusipsiml1
Accessory basal nucleusipsiAB0.5
Basal nucleus anterior subdivisionipsiBncA0.5
Basal nucleus ventral divisonipsiBncV-0.5
Basolateral amygdaloid nucleusipsiBL0.5
Dorsolateral part of the lateral nucleusipsiLaDL0.5
Bed nucleus of the stria terminalisipsiBST0.5
Central amygdaloid nucleusipsiCe3
Lateral half shell of the central complexipsiCecLh0.5
Medial half shell of the central amygdaloid nucleusipsiCecMh0.5
Central partipsiCeLc1
Anterior cortical amygdaloid nucleusipsiACo0.5
Medial amygdaloid nucleus anterior partipsiMeAn0.5
Medial amygdaloid nucleus posterior partipsiMePo0.5
Globus pallidusipsiGP-0.5
Medial globus pallidusipsiMGP-0.5
Peripallidal regionipsiPePa0
Subpallidal regionipsiSuPa0
Ventral pallidumipsiVP1
Accumbens nucleus shellipsiAcbSh1
Dorsal caudomedial extent of the accumbens nucleus shellipsiAcbShdcm-0.5
Cone like caudal dorsomedial extremity of the accumbens shellipsiAcbShco1
Septal pole of the accumbens nucleusipsiAcSe-0.5
Caudate putamenipsiCPu0
Subthalamic nucleusipsiSTh2
Parasubthalamic nucleusipsiPSTh1
Retrosplenial granular cortex layer 3ipsiRSGL31
Anterior cingulate cortexipsiACC-0.5
Dorsal anterior cingulate cortex layer 3ipsiDACCL33
Ventral anterior cingulate cortex layer 3ipsiVACCL3-0.5
Prelimbic cortex layer 3ipsiPrLL3-0.5
Infralimbic cortex layer 3ipsiILL3-0.5
Frontal cortex area 2ipsiFr2-0.5
Frontal cortex area 2 layer 3ipsiFr2L3-0.5
Agranular insular cortex dorsal partipsiAID-0.5
Agranular insular cortex dorsal part layer 3ipsiAIDL3-0.5
Agranular insular cortex layer 3ipsiAIL3-0.5
Agranular insular cortex ventral part layer 3ipsiAIVL3-0.5
Somatomotoric regionsipsiSMR-0.5
Lateral agranular prefrontal cortex layer 3ipsiAGlL3-0.5
Sensory regionsipsiSR0
Lateral orbital cortex caudal partipsiLOc-0.5
Lateral orbital cortex layer 3ipsiLOLaL33
Lateral orbital cortex rostral partipsiLOr-0.5
Medial orbital cortexipsiMO-0.5
Medial orbital cortex layer 3ipsiMOcxL3-0.5
Ventral orbital cortexipsiVO-0.5
Ventral orbital cortex layer 3ipsiVOL33
Ventrolateral orbital areaipsiVLO-0.5
Ventrolateral orbital area layer 3ipsiVLOL30
Precommissural nucleusipsiPrC1
Interpeduncular nucleusipsiIP2
Interpeduncular nucleus apical subnucleusipsiIPA2.5
Interpeduncular nucleus caudal subnucleusipsiIPC2.5
Ventral part of the caudal interpeduncular nucleusipsiIPCv2
Interpeduncular nucleus central subnucleusipsiIPRc2.5
Interpeduncular nucleus dorsal subnucleusipsiIPRd2.5
Interpeduncular nucleus dorsolateral partipsiIPRdL-0.5
Ventral part of the dorsal lateral interpeduncular nucleusipsiIPRvdL0.5
Interpeduncular nucleus intermediate subnucleusipsiIPI2.5
Interpeduncular nucleus lateral subnucleusipsiIPL2.5
Intermediate lateral half of the caudal part of the lateral interpeduncular nucleusipsiIPLcimL-0.5
Interpeduncular nucleus rostral subnucleusipsiIPR1
Interpeduncular nucleus rostral subnucleus central partipsiIPRce-0.5
Interpeduncular nucleus rostrolateral subnucleusipsiIPRL0.5
Caudoventral part of the rostral lateral interpeduncular nucleusipsiIPcvRL0.5
Interpeduncular nucleus perivascular zoneipsiIPpz1
Olfactory bulb A16ipsiMOB1
Olfactory tubercleipsiTuO2
Ventrolateral septal regionipsiVLSER-0.5

Input from

NameSideAbbr.WeightDetails
MesencephaloncontraMEC0.5
Central graycontraCG0.5
Central gray lateral partcontraCGL0.5
Periaqueductal graycontraPAG0
Dorsal periaqueductal gray caudal partcontraDPAGC0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Dorsolateral periaqueductal gray rostral partcontraPAGdlr0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc2
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0.5
Superior colliculuscontraSC1
Substantia nigra compact partcontraSNC-0.5
Ventral tegmental area A10contraVTA4
Laterodorsal tegmental nucleuscontraLDTg-0.5
Dorsal tegmental nucleuscontraDTg3
Dorsal tegmental nucleus lateral partcontraDLTN1
Locus coeruleuscontraLC2
Nucleus incertus pars compactacontraNIc2
Nucleus incertus pars dissipatacontraNId2
Pontine reticular nucleuscontraPRN0
Median raphe nucleuscontraMnR0.5
Superior central raphe nucleuscontraCS0.5
Basal forebraincontraBAF0.5
Diagonal band of BrocacontraDBB0.5
Substantia innominatacontraSI0.5
Intermediate hypothalamic cell groupscontraIHCG-0.5
Lateral preoptic areacontraLPO1
Lateral preoptic lateral hypothalamic continuumcontraLPOLH2
Medial preoptic areacontraMPA2
Medial preoptic nucleuscontraMPO-0.5
HypothalamuscontraHYPO0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Lateral zonecontraLHA4
Lateral hypothalamic areacontraLH0.5
Lateral hypothalamic area anterior partcontraLHAa-0.5
Lateral hypothalamic area perifornical partcontraPFx-0.5
Lateral hypothalamic area rostral partcontraLHro-0.5
Tuberal region of lateral hypothalamuscontraTuLH-0.5
Anterior hypothalamic areacontraAHA-0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]contraAVPe0.5
Dorsal hypothalamic areacontraDA-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Ventromedial hypothalamic nucleus central partcontraVMHC0
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contravPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAPav-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleuscontraPVPapvA-0.5
Perifornical nucleuscontraPeF-0.5
Tip of the internal capsulecontratic4
Central amygdaloid nucleuscontraCe-1
Globus palliduscontraGP0.5
Medial globus palliduscontraMGP0.5
Medial globus pallidus rostral partcontraMGPr1
Ventral pallidumcontraVP0.5
Medial accumbenscontraAcbM1
Interpeduncular nucleuscontraIP1
Interpeduncular nucleus lateral subnucleuscontraIPL0
Triangular septal nucleuscontraTS0
MesencephalonipsiMEC1.5
Central grayipsiCG2
Central gray lateral partipsiCGL1
Medial longitudinal fasciculusipsimlf3
Periaqueductal grayipsiPAG3
Dorsal periaqueductal grayipsiDPAG2
Dorsal periaqueductal gray caudal partipsiDPAGC0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Dorsolateral periaqueductal gray rostral partipsiPAGdlr0
Lateral periaqueductal grayipsiLPAG2
Periaqueductal gray lateroventral partipsiPAGLV1
Ventral periaqueductal grayipsiVPAG1
Ventrolateral periaqueductal grayipsiVLPAG1
Ventrolateral periaqueductal gray caudal partipsiPAGvlc2
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0
Periventricular gray matteripsiPVG-0.5
Superior colliculusipsiSC1
Posterodorsal tegmental nucleusipsiPDTg0
Substantia nigra A9ipsiSN1
Substantia nigra compact partipsiSNC1
Substantia nigra compact part medial tieripsiSNCM0.5
Substantia nigra compact part ventral tier dopaminergic neuron populationipsiSNCVdopa0.5
Substantia nigra reticular partipsiSNR1
Ventral tegmental area A10ipsiVTA4
Ventral tegmental area A10 dorsal partipsiVTAd0.5
Ventral tegmental area A10 lateral nucleiipsiVTALN2
Ventral tegmental area A10 medial nucleiipsiVTAmn1
Interfascicular nucleusipsiIF2
Ventral tegmental area rostral partipsiVTAR1
Ventral tegmental area rostrodorsolateral partipsiVTARDL1
Ventral tegmental tailipsiVTTa1
Ventral tegmental area anterior partipsiVTAA3
Ventral tegmental area posterior partipsiVTAP2
Parabrachial pigmented nucleusipsiPBP2
Paranigral nucleusipsiPN3
Caudal linear nucleus of the rapheipsiCLi1
Laterodorsal tegmental nucleusipsiLDTg1
Laterodorsal tegmental nucleus rostral halfipsiLDTgrh3
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleusipsiDTg2
Dorsal tegmental nucleus dorsal partipsiDTgD3
Dorsal tegmental nucleus lateral partipsiDLTN2
Ventromedial part of the ventral aprt of the dorsal tegmental nucleusipsiDTgVVM3
Pedunculopontine tegmental nucleusipsiPPTg1
Paramedian region of the midbrainipsiMECparam1
Edinger Westphal nucleusipsiEW1
Cerebellar nucleiipsiDCeN1
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC1
Locus coeruleus dorsal partipsiLCD3
Locus coeruleus rostral partipsiLCRo3
Nucleus incertus pars compactaipsiNIc3
Nucleus incertus pars dissipataipsiNId3
Pontomesencephalic grayipsiPoMG-0.5
Deep mesencephalic nucleusipsiDpMe1
Pontine reticular nucleusipsiPRN1
Cuneiforme nucleusipsiCnF1
Parabrachial nucleusipsiPB-0.5
Parabrachial nucleus medialipsiPBnMe2
MyelencephalonipsiMYC2
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus dorsal partipsiDRD3
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm1
Dorsal raphe nucleus lateral wingipsiDRlw1
Dorsal raphe nucleus rostral partipsiDRr2
Dorsal raphe nucleus ventral partipsiDRV3
Rostral linear nucleus of the rapheipsiRLi2
Median raphe nucleusipsiMnR3
Medial raphe nucleusipsiMeR3
Superior central raphe nucleusipsiCS3
Paramedian raphe nucleusipsiPMnR-0.5
Pontine raphe nucleusipsiPnR1.5
Raphe interpositus nucleusipsiRIP1
Raphe magnus nucleusipsiRMg1
Raphe magnus nucleus rostral partipsiRMgR1
Basal forebrainipsiBAF3
Endopiriform systemipsiEnN1
Magnocellular basal forebrain neuronal complexipsiMBFNC1.5
Diagonal band of BrocaipsiDBB4
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Lateral part of the nucleus of the horizontal limb of the diagonal bandipsiLPHDB0
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Nucleus of the vertical limb of the diagonal band lateral partipsiVDBL2
Medial septal nucleusipsiMS2
Medial septal nucleus medial partipsiMSm-0.5
Basal nucleus MeynertipsiB0.5
Substantia innominataipsiSI3
Substantia innominata caudal aspectipsiSIc1
Substantia innominata dorsal partipsiSID-0.5
Navicular nucleus of the basal forebrainipsiNv1
Intermediate hypothalamic cell groupsipsiIHCG2
Lateral preoptic areaipsiLPO4
Lateral preoptic area anterior partipsiLPOa2
Lateral preoptic area caudal partipsiLPOc1.5
Lateral preoptic area dorsal partipsiLPOd1
Lateral preoptic area rostral partipsiLPOr1.5
Lateral preoptic area rostral part dorsal subfieldipsiLPOrd1
Lateral preoptic area rostral part ventromedian subfieldipsiLPOrvms3
Lateral preoptic area ventral partipsiLPOv1
Region of transition between lateral preoptic area and lateral hypothalamic areaipsiLPOTLH3
Lateral preoptic lateral hypothalamic continuumipsiLPOLH3
Medial preoptic areaipsiMPA4
Medial preoptic area dorsolateral partipsiMPADL1
Magnocellular preoptic nucleusipsiMCPO1
Medial preoptic nucleusipsiMPO1
Ventrolateral preoptic nucleusipsiVLPO3
Preoptic region rostral partipsiPREOr3
Nucleus preoptic ventrolateralisipsiPREOVL1
Dorsolateral preoptic regionipsiPREOdL3
Tenia tectaipsiTT1
HypothalamusipsiHYPO2
Dorsomedial hypothalamic nucleusipsiDMHy1
Caudal part of the dorsomedial hypothalamic nucleusipsiDMHyC-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC4
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR4
Lateral zoneipsiLHA4
Lateral hypothalamic areaipsiLH4
Lateral hypothalamic area anterior partipsiLHAa-0.5
Lateral hypothalamic area juxtadorsomedial regionipsiJDM3
Lateral hypothalamic area medial partipsiLHAm-0.5
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0.5
Lateral hypothalamic area perifornical partipsiPFx3
Lateral hypothalamic area posterior partipsiLHAp2
Lateral hypothalamic area rostral partipsiLHro2
Lateral hypothalamic area ventral partipsiLHAvp2
Tuberal region of lateral hypothalamusipsiTuLH-0.5
Tuberal division of the lateral hypothalamic areaipsiLHTC-0.5
Anterior hypothalamic areaipsiAHA3
Anterior hypothalamic area posterior partipsiAHAP2.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe1
Anterior hypothalamic nucleusipsiAHn1
Dorsal hypothalamic areaipsiDA2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM3
Parastriatal nucleusipsiPS3
Posterior hypothalamic areaipsiPHA1
Midlateral posterior hypothalamic areaipsiPHAmL-0.5
Posterior hypothalamic nucleus caudal partipsiPHCa0
Posterior hypothalamic nucleus rostral partipsiPHRo0
Subparaventricular zoneipsiSuPZ-0.5
Subparaventricular zone dorsomedial partipsiSuPZdm0
Ventromedial hypothalamic nucleusipsiVMH2
Ventromedial hypothalamic nucleus central partipsiVMHC3
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM0.5
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL3
Arcuate nucleusipsiArc2
Area around the suprachiasmatic nucleusipsiAASCh1
Paraventricular hypothalamic nucleus caudal partipsiPaPoC-0.5
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP-0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsivPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAPav-0.5
Paraventricular hypothalamic nucleusipsiPa2
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleusipsiPVPapvA-0.5
Suprachiasmatic nucleusipsiSCh1
Suprachiasmatic nucleus dorsal divisionipsiSChd-0.5
Supraoptic nucleus [Supraoptic region]ipsiSO3
Mammillary bodyipsiCMAM1
Premammillary nucleusipsiPMAN1
Supramammillar nucleus lateral part lateral subpartipsiSuMLL0
Supramammillar nucleus lateral part medial subpartipsiSuMLM0
Supramammillar nucleus medial partipsiSuMM0
A8 dopamine cells retrorubral groupipsiRRF1
Perifornical nucleusipsiPeF1
Perifornical nucleus medial partipsiPeFM1
Anteroventral thalamic nucleusipsiAV1
Parafascicular thalamic nucleusipsiPF-0.5
Rhomboid thalamic nucleusipsiRh1
Mediodorsal thalamic nucleusipsiMD-2
Paraventricular thalamic nucleusipsiPV1
Reuniens thalamic nucleusipsiRe1
Subfornical organipsiSFO3
Laterodorsal thalamic nucleusipsiLD1
Reticular thalamic nucleusipsiRt2
Reticular thalamic nucleus rostrocaudal partipsiRtrc3
Subparafascicular thalamic nucleusipsiSPF2
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Zona incertaipsiZI1
Tuber cinereum areaipsiTC-0.5
Lateral habenular nucleusipsiLHb1
Medial habenular nucleusipsiMHb-2
Tip of the internal capsuleipsitic4
Ventromedial edge of the internal capsuleipsivmic-2
Inferior thalamic peduncleipsiitp4
Retina nasal part ganglion cell layer retinal ganglion cellsipsiRETngcLc-0.5
Retina temporal part ganglion cell layer retinal ganglion cellsipsiRETtgcLc-0.5
Retinal ganglion cellsipsiRETg1
Bed nucleus of the stria terminalisipsiBST4
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm2
Bed nucleus of the stria terminalis magnocellular nucleusipsiBSTmc1
Bed nucleus of the stria terminalis oval nucleusipsiBSTo-10
Bed nucleus of the stria terminalis lateral divisionipsiBSTL2.5
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd2
Bed nucleus of the stria terminalis posterior division ventral nucleusipsiBSTV-0.5
Bed nucleus of the stria terminalis ventral tipipsiBNSTvt1
Bed nucleus of the stria terminalis subcommissural partipsiBSTsuco2.5
Central amygdaloid nucleusipsiCe-1
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC1
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM-0.5
Sublenticular extended amygdalaipsiSLEA1
Anterior amygdaloid areaipsiAA-0.5
Anterior cortical amygdaloid nucleusipsiACo0.5
Medial amygdaloid nucleusipsiMe3
Medial amygdaloid nucleus anterodorsal partipsiMeAD0.5
ClaustrumipsiCl1
Globus pallidusipsiGP2
Lateral globus pallidusipsiLGP-0.5
Medial globus pallidusipsiMGP4
Medial globus pallidus caudal partipsiMGPc2
Medial globus pallidus caudal one-thirdipsiMGPcot-0.5
Medial globus pallidus dorsal partipsiMGPd1
Medial globus pallidus rostral partipsiMGPr2
Rostral two-third of the entopeduncular nucleusipsiMGPrtt4
Medial globus pallidus ventral partipsiMGPv1
Peripallidal regionipsiPePa0
Ventral part of rostral globus pallidusipsiGPrv2.5
Subpallidal regionipsiSuPa0
Ventral pallidumipsiVP2.5
Ventral pallidum caudal partipsiVPc2.5
Ventral pallidum lateral partipsiVPlp2.5
Ventral pallidum medial partipsiVPm-0.5
Accumbens nucleusipsiAc2
Accumbens nucleus shellipsiAcbSh1
Medial accumbensipsiAcbM3
Subthalamic nucleusipsiSTh1
Bed nucleus of the anterior commissureipsiBAC1
HippocampusipsiHIPP4
Subiculum ventral partipsiSv1
Ventral hippocampal commissureipsivhc1
Cingulate cortexipsiCg2
Anterior cingulate cortexipsiACC1
Dorsal anterior cingulate cortex layer 5ipsiDACCL5-0.5
Dorsal anterior cingulate cortex layer 6ipsiDACCL6-0.5
Dorsal cingulate cortexipsiDCC3
Prelimbic cortexipsiPrL2
Infralimbic cortexipsiIL1
Infralimbic cortex layer 6ipsiILL62
NeocortexipsiNEOCX4
Frontal cortex area 1ipsiFr1-0.5
Insular cortexipsiICX1
Dorsal peduncular cortexipsiDP1
Medial prefrontal cortexipsimPFC3
Medial agranular prefrontal cortexipsiAGm0
Primary somatosensory cortexipsiS10.5
Lateral orbital cortexipsiLO1
Medial orbital cortexipsiMO1
Ventral orbital cortexipsiVO1
Ventral lateral geniculate nucleusipsiVLG1
Medial geniculate nucleusipsiMG1
Interpeduncular nucleusipsiIP1
Interpeduncular nucleus lateral subnucleusipsiIPL1
Septal regionipsiSER4
Dorsal medial septumipsiDMS0
Dorsolateral septumipsiDLSER0
Lateral septal nucleusipsiLS3
Lateral septal nucleus most caudal aspectipsiLSmca1
Lateral septal nucleus ventral partipsiLSV1
Posterior septal complexipsiPSC1
Septofimbrial nucleusipsiSFi1
Triangular septal nucleusipsiTS1
Ventrolateral septal regionipsiVLSER0
Gray matter of the floor of the 4th ventricleipsiGMF4V3
Thoracal segment 6ipsiT60.5
Thoracal segment 7ipsiT70.5
Thoracal segment 8ipsiT80.5
Thoracal segment 9ipsiT90.5
Lumbar segment 6ipsiL60.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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