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Rat connectome



Septal region right


Abbreviation
SER
Color       
Superior regionsTelencephalon

SynonymsAbbr.Language
 SEP 
Septal nuclei  
Area septalis Eng
Septal area  
Septal complex Eng
Septal nucleus Eng
Septal regionSEREng
Septum  

SubregionsSide
Anterior septal regionright
Dorsal septumright
Lambdoid septal zoneright
Lateral septal nucleusright
Paralambdoid septal nucleusright
Posterior septal complexright
Rostrolateral part of the septumright
Septal region intermediate partright
Septal region rostral partright
Septo-accumbens arearight
Septohypothalamic nucleusright
Supracommissural septumright
Ventral medial septumright
Ventral septal regionright
Ventrolateral septal regionright
Midline of the septumright
Border between medial and lateral septumright
Caudal septumright
Intermediolateral septal arearight
Postcommissural septumright
Septal wallright
Septohippocampal subdivision of the septumright
Medial septal regionright
Fimbrial nucleus of septumright

Output to

NameSideAbbr.WeightDetails
A5 noradrenaline cellscontraA51
Inferior salivatory nucleuscontraIS1
Superior salivatory nucleuscontraSuS1
Lateral zonecontraLHA1
Supraoptic nucleus anterior divisioncontraSOA-0.5
Dorsal hippocampuscontraHIPPd-0.5
Dorsal hippocampus dentate gyruscontraDDG3
Field CA1 of hippocampus stratum lacunosum-moleculare deep partcontraCA1deLM-0.5
Field CA1 of hippocampus layer stratum radiatumcontraCA1rad-0.5
Ventral hippocampuscontraHIPPv-0.5
Alveus of the hippocampuscontraalv-0.5
Cingulate cortex area 3contraCg31
Primary visual cortexcontraV1-0.5
Secondary visual cortex lateral areacontraV2L-0.5
Central grey rostral midbrainipsirmCG-2
Central gray mesencephalic part inferior colliculus levelipsiCGMinf-1
Central gray mesencephalic part intercollicular levelipsiCGMint-1
Central gray mesencephalic part superior colliculus levelipsiCGMsc-1
Middle central gray mesencephalic partipsiCGMi-2
Epithalamic central grayipsiCGepi3
Periaqueductal gray rostrolateral partipsiPAGRL-0.5
Mesopontine tegmental area caudal partipsiTGAmc1
Mesopontine tegmental area mid-levelipsiTGAmm1
Mesopontine tegmental area rostral partipsiTGAmr1
Midbrain extrapyramidal areaipsiMEA0.5
Ventral tegmental area A10ipsiVTA3
Interfascicular nucleusipsiIF-0.5
Ventral tegmental area A10 rostrocaudal partipsiVTArc2
Paranigral nucleusipsiPN-0.5
Pedunculopontine tegmental nucleusipsiPPTg1
Pedunculopontine tegmental nucleus caudal partipsiPPTgC1
Pedunculopontine tegmental nucleus mid levelipsiPPTgmL1
Pedunculopontine tegmental nucleus rostral partipsiPPTgR1
A5 noradrenaline cellsipsiA52
Reticular systemipsiRF0
Lateral reticular nucleusipsiLRt2
Nucleus of the solitary tractipsiSol1
Caudal medulla oblongata ventral regionipsiCMeObV-2
Inferior salivatory nucleusipsiIS2
Superior salivatory nucleusipsiSuS2
Dorsal fornixipsidf-2
Median eminenceipsiME-0.5
Islands of CallejaipsiICj1
Nucleus of the horizontal limb of the diagonal bandipsiHDB-0.5
Preoptic regionipsiPREO-0.5
Lateral preoptic nucleusipsiLPN2
HypothalamusipsiHYPO2
Dorsomedial hypothalamic nucleusipsiDMHy-2
Lateral hypothalamic areaipsiLH-0.5
Lateral hypothalamic nucleusipsiLHN2
Lateral hypothalamic area dorsal to the supraoptic nucleusipsiLHdSO-0.5
Lateral hypothalamic area lateral to the supraoptic nucleusipsiLHLso-0.5
Lateral hypothalamic area dorsomedial to the supraoptic nucleusipsiLHdmSO-0.5
Supraoptic nucleus [Lateral zone]ipsiSOLZ0
Anterior hypothalamic areaipsiAHA-2
Midlateral posterior hypothalamic areaipsiPHAmL-0.5
Ventromedial hypothalamic nucleusipsiVMH-1
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP-0.5
Supraoptic nucleus [Supraoptic region]ipsiSO4
Perinuclear zone of the supraoptic nucleus of the hypothalamusipsipnzSO-0.5
Supraoptic nucleus anterior divisionipsiSOA-0.5
Supraoptic nucleus perinuclear zoneipsiSOpnz4
Supraoptic nucleus tuberal partipsiSOT-0.5
Mammillary bodyipsiCMAM-0.5
ThalamusipsiT3
Anterodorsal thalamic nucleusipsiAD-0.5
Anteromedial thalamic nucleusipsiAM-0.5
Anteroventral thalamic nucleusipsiAV-0.5
Paratenial thalamic nucleusipsiPT-0.5
Paraventricular thalamic nucleusipsiPV3
Reuniens thalamic nucleus ventral partipsiReV-0.5
Intralaminar nucleiipsiILN1
Medial thalamic zoneipsiMTZ-0.5
Reticular thalamic nucleus intermediate partipsiRti2
Reticular thalamic nucleus medial partipsiRtm2
Zona incertaipsiZI-0.5
HabenulaipsiHAB3
Lateral habenular nucleusipsiLHb4
Medial habenular nucleusipsiMHb3
Medial habenular nucleus lateral partipsiMHbL2
Medial habenular nucleus medial partipsiMHbm3
Around corpus callosumipsiarcc-2
Amygdaloid complexipsiAC1
Basolateral amygdaloid nucleusipsiBL3
Accumbens nucleusipsiAc3
Lateral accumbens shellipsiAcbShl0
Medial accumbensipsiAcbM1
HippocampusipsiHIPP2
Indusium griseum anterior hippocampal continuationipsiAHCCig-0.5
Anterodorsal one third hippocampusipsiHIPPADot3
Dorsal hippocampusipsiHIPPd-0.5
Rostral pole of the dorsal hippocampal formationipsiHIPPdr3
Dentate gyrusipsiDG3
Dentate gyrus rostral part superficial layer of granule cellsipsiDGrGC-0.5
Rostral dentate gyrus medial part molecular layeripsiDGrMmo-1
Dorsal hippocampus dentate gyrusipsiDDG3
Subgranular layer of the dentate gyrusipsiDGsg2
Granule cell layer of the dentate gyrusipsiDGgL-0.5
Hilus of the dentate gyrusipsiHil3
Molecular layer of the internal blade of the dentate gyrusipsiDGimML3
Molecular layer of the sxternal blade of the dentate gyrusipsiDGexML0.5
Field CA1 of hippocampusipsiCA1-0.5
Field CA1 of hippocampus stratum lacunosum-moleculareipsiCA1LM1
Field CA1 of hippocampus layer stratum moleculareipsiCA1L7sm1
Field CA1 of hippocampus stratum lacunosum-moleculare deep partipsiCA1deLM-0.5
Field CA1 of hippocampus layer stratum radiatumipsiCA1rad1
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr1
Field CA1 of hippocampus layer stratum oriensipsiCA1or1
Field CA2 of hippocampus layer stratum moleculareipsiCA2L7sm1
Field CA3 of hippocampusipsiCA33
Field CA3 of hippocampus layer stratum moleculareipsiCA3L7sm1
Field CA3 of hippocampus layer stratum radiatumipsiCA3rad3
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr1
Field CA3 of hippocampus layer stratum oriensipsiCA3or3
SubiculumipsiS3
Ventral hippocampusipsiHIPPv-0.5
Supragranular cells of the ventral hippocampal formationipsiHIPPvsgc0
Granule cells of the dentate gyrusipsiGrCDG-0.5
Alveus of the hippocampusipsialv3
Fimbria of the hippocampusipsifi-2
Fornixipsif-2
Entorhinal cortexipsiEnt1
Lateral entorhinal cortexipsiLEnt1
Lateral entorhinal cortex lateral partipsiLEntLa1.5
Lateral entorhinal cortex medial partipsiLEntM1.5
Lateral entorhinal cortex intermediate partipsiLEnti2
Medial entorhinal cortexipsiMEnt1
Medial entorhinal cortex lateral partipsiMEntL1.5
Medial entorhinal field medial partipsiMEntFm1.5
Intermediate medial entorhinal cortexipsiMEntim1.5
Cingulate cortexipsiCg-0.5
Cingulate cortex area 3ipsiCg32
Medial cingulate cortexipsiMCg-0.5
Agranular insular cortex dorsal part superficial layersipsiAIDsL0
Lateral agranular prefrontal cortexipsiAGl3
Medial prefrontal cortexipsimPFC1
Primary visual cortexipsiV1-0.5
Secondary visual cortex lateral areaipsiV2L-0.5
Precommissural nucleusipsiPrC-0.5
Interpeduncular nucleus apical subnucleusipsiIPA-0.5
Interpeduncular nucleus caudal subnucleusipsiIPC-0.5
Interpeduncular nucleus central subnucleusipsiIPRc-0.5
Interpeduncular nucleus dorsal subnucleusipsiIPRd-0.5
Ventral part of the dorsal lateral interpeduncular nucleusipsiIPRvdL-0.5
Interpeduncular nucleus intermediate subnucleusipsiIPI-0.5
Interpeduncular nucleus lateral subnucleusipsiIPL-0.5
Interpeduncular nucleus rostral subnucleus central partipsiIPRce2
Caudoventral part of the rostral lateral interpeduncular nucleusipsiIPcvRL-0.5
Olfactory tubercle lateral partipsiTuOL0.5
Olfactory tubercle medial partipsiTuOMP0.5
Lateral septal nucleus rostral partipsiLSr-0.5
Mid-lateral septumipsimiLS3
Lateral ventricleipsiLV-0.5
Sciatic nerveipsisci1
Femoral bone marrowipsiOrgSkFemM2

Input from

NameSideAbbr.WeightDetails
Laterodorsal tegmental nucleuscontraLDTg2
Reticulotegmental nucleus of the pons medial partcontraRtTgm1
Dorsal raphe nucleuscontraDR2
Median raphe nucleuscontraMnR2
Pontine raphe nucleuscontraPnR1
Raphe magnus nucleuscontraRMg1
Preoptic regioncontraPREO1
Dorsomedial hypothalamic nucleuscontraDMHy1
Preoptic anterior regioncontraPAreg1
Lateral hypothalamic areacontraLH1
Anterior hypothalamic areacontraAHA1
Dorsomedial hypothalamic nucleus [Medial zone]contraDM1
Ventromedial hypothalamic nucleuscontraVMH1
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Supraoptic regioncontraSoR1
Supraoptic hypothalamic partcontraSOHYP1
Incerto hypothalamic areacontraicHYPO-0.5
Supramammillar nucleuscontraSuM1
Paratenial thalamic nucleuscontraPT0
Paraventricular thalamic nucleuscontraPV0
Reuniens thalamic nucleuscontraRe0
Reticular thalamic nucleuscontraRt2
RetinacontraRET-2
Basal nucleuscontraBnc0
Lateral amygdaloid nucleuscontraLA0
Central amygdaloid nucleuscontraCe0
Cortical amygdaloid nucleuscontraCAn0
Medial amygdaloid nucleuscontraMe0
HippocampuscontraHIPP-0.5
Field CA1 of hippocampuscontraCA13
Field CA1 of hippocampus layer stratum pyramidale superficialcontraCA1L3sps-0.5
Field CA1 of hippocampus mid levelcontraCA1mi-0.5
Proximal field CA1 of hippocampuscontraPCA1-0.5
Field CA2 of hippocampuscontraCA2-0.5
Field CA2 of hippocampus layer stratum pyramidalecontraCA2pyr-0.5
Field CA2 of hippocampus border of stratum oriens and stratum pyramidalecontraCA2Lorpy-0.5
Distal field CA3 of hippocampus mossy fiber zonecontraDCA3mfz0.5
Distal field CA3 of hippocampus deep pyramidal cell layercontraDCA3dpy0.5
Field CA3 of hippocampus layer stratum pyramidalecontraCA3pyr-0.5
Field CA3 of hippocampus layer stratum pyramidale pyramidal neuronscontraCA3L3spy-0.5
Field CA3a of hippocampuscontraCA3a-0.5
Field CA3a of hippocampus border of stratum oriens and stratum pyramidalecontraCA3aLorpy-0.5
Field CA3a of hippocampus pyramidal cell layercontraCA3aLpy-0.5
Field CA3a of hippocampus pyramidal cell layer pyramidal cellscontraCA3aLpyc-0.5
Field CA3b of hippocampuscontraCA3b-0.5
Field CA3b of hippocampus stratum pyramidalecontraCA3bpy-0.5
Proximal field CA3 of hippocampus mossy fiber zonecontraPCA3mfz0.5
Proximal field CA3 of hippocampus pyramidal cell layercontraPCA3py0.5
SubiculumcontraS3
ProsubiculumcontraProS-0.5
Posterior hippocampus layer 5 pyramidal cellscontraHIPPpoL5pyc-0.5
Subicular cortex border to CA1contraHIPPbCA1-0.5
PresubiculumcontraPrS-0.5
Medial entorhinal cortexcontraMEnt0
Prelimbic cortex ventral partcontraPrLv1
Infralimbic cortexcontraIL1
Agranular insular cortex dorsal partcontraAID-1
Dorsal peduncular cortexcontraDP1
Ventral peduncular cortexcontraPCv1
Ventral medial prefrontal cortexcontravmPFC1
Medial orbital cortexcontraMO1
Interpeduncular nucleus caudal subnucleuscontraIPC-0.5
Lateral spinal nucleus C1contraLSpC1-0.5
Area X C1contraSCL10C12
Spinal cord layer 5 C1contraSCL5C12
Spinal cord layer 6 C1contraSCL6C12
Spinal cord layer 3 C1contraSCL3C12
Spinal cord layer 4 C1contraSCL4C12
Spinal cord layer 1 C1contraSCL1C12
Spinal cord layer 2 C1contraSCL2C12
Spinal cord layer 7 C1contraSCL7C12
Lateral spinal nucleus C2contraLSpC2-0.5
Area X C2contraSCL10C22
Spinal cord layer 5 C2contraSCL5C22
Spinal cord layer 6 C2contraSCL6C22
Spinal cord layer 3 C2contraSCL3C22
Spinal cord layer 4 C2contraSCL4C22
Spinal cord layer 1 C2contraSCL1C22
Spinal cord layer 2 C2contraSCL2C22
Spinal cord layer 7 C2contraSCL7C22
Lateral spinal nucleus C3contraLSpC3-0.5
Area X C3contraSCL10C32
Spinal cord layer 5 C3contraSCL5C32
Spinal cord layer 6 C3contraSCL6C32
Spinal cord layer 3 C3contraSCL3C32
Spinal cord layer 4 C3contraSCL4C32
Spinal cord layer 1 C3contraSCL1C32
Spinal cord layer 2 C3contraSCL2C32
Spinal cord layer 7 C3contraSCL7C32
Lateral spinal nucleus C4contraLSpC4-0.5
Area X C4contraSCL10C42
Spinal cord layer 5 C4contraSCL5C42
Spinal cord layer 6 C4contraSCL6C42
Spinal cord layer 3 C4contraSCL3C42
Spinal cord layer 4 C4contraSCL4C42
Spinal cord layer 1 C4contraSCL1C42
Spinal cord layer 2 C4contraSCL2C42
Spinal cord layer 7 C4contraSCL7C42
Lateral spinal nucleus C5contraLSpC5-0.5
Area X C5contraSCL10C52
Spinal cord layer 5 C5contraSCL5C52
Spinal cord layer 6 C5contraSCL6C52
Spinal cord layer 3 C5contraSCL3C52
Spinal cord layer 4 C5contraSCL4C52
Spinal cord layer 1 C5contraSCL1C52
Spinal cord layer 2 C5contraSCL2C52
Spinal cord layer 7 C5contraSCL7C52
Lateral spinal nucleus C6contraLSpC6-0.5
Area X C6contraSCL10C62
Spinal cord layer 5 C6contraSCL5C62
Spinal cord layer 6 C6contraSCL6C62
Spinal cord layer 3 C6contraSCL3C62
Spinal cord layer 4 C6contraSCL4C62
Spinal cord layer 1 C6contraSCL1C62
Spinal cord layer 2 C6contraSCL2C62
Spinal cord layer 7 C6contraSCL7C62
Lateral spinal nucleus C7contraLSpC7-0.5
Area X C7contraSCL10C72
Spinal cord layer 5 C7contraSCL5C72
Spinal cord layer 6 C7contraSCL6C72
Spinal cord layer 3 C7contraSCL3C72
Spinal cord layer 4 C7contraSCL4C72
Spinal cord layer 1 C7contraSCL1C72
Spinal cord layer 2 C7contraSCL2C72
Spinal cord layer 7 C7contraSCL7C72
Lateral spinal nucleus C8contraLSpC8-0.5
Area X C8contraSCL10C82
Spinal cord layer 5 C8contraSCL5C82
Spinal cord layer 6 C8contraSCL6C82
Spinal cord layer 3 C8contraSCL3C82
Spinal cord layer 4 C8contraSCL4C82
Spinal cord layer 1 C8contraSCL1C82
Spinal cord layer 2 C8contraSCL2C82
Spinal cord layer 7 C8contraSCL7C82
Lateral spinal nucleus T1contraLSpT1-0.5
Lateral spinal nucleus T2contraLSpT2-0.5
Lateral spinal nucleus T3contraLSpT3-0.5
Lateral spinal nucleus T4contraLSpT4-0.5
Area X T4contraSCL10T42
Spinal cord layer 5 T4contraSCL5T42
Spinal cord layer 6 T4contraSCL6T42
Spinal cord layer 3 T4contraSCL3T42
Spinal cord layer 4 T4contraSCL4T42
Spinal cord layer 1 T4contraSCL1T42
Spinal cord layer 2 T4contraSCL2T42
Spinal cord layer 7 T4contraSCL7T42
Lateral spinal nucleus T5contraLSpT5-0.5
Lateral spinal nucleus T6contraLSpT6-0.5
Area X T6contraSCL10T62
Spinal cord layer 5 T6contraSCL5T62
Spinal cord layer 6 T6contraSCL6T62
Spinal cord layer 3 T6contraSCL3T62
Spinal cord layer 4 T6contraSCL4T62
Spinal cord layer 1 T6contraSCL1T62
Spinal cord layer 2 T6contraSCL2T62
Spinal cord layer 7 T6contraSCL7T62
Lateral spinal nucleus T7contraLSpT7-0.5
Lateral spinal nucleus T8contraLSpT8-0.5
Area X T8contraSCL10T82
Spinal cord layer 5 T8contraSCL5T82
Spinal cord layer 6 T8contraSCL6T82
Spinal cord layer 3 T8contraSCL3T82
Spinal cord layer 4 T8contraSCL4T82
Spinal cord layer 1 T8contraSCL1T82
Spinal cord layer 2 T8contraSCL2T82
Spinal cord layer 7 T8contraSCL7T82
Lateral spinal nucleus T9contraLSpT9-0.5
Lateral spinal nucleus T10contraLSpT10-0.5
Lateral spinal nucleus T11contraLSpT11-0.5
Lateral spinal nucleus T12contraLSpT12-0.5
Area X T12contraSCL10T122
Spinal cord layer 5 T12contraSCL5T122
Spinal cord layer 6 T12contraSCL6T122
Spinal cord layer 3 T12contraSCL3T122
Spinal cord layer 4 T12contraSCL4T122
Spinal cord layer 1 T12contraSCL1T122
Spinal cord layer 2 T12contraSCL2T122
Spinal cord layer 7 T12contraSCL7T122
Lateral spinal nucleus T13contraLSpT13-0.5
Lateral spinal nucleus L1contraLSpL1-0.5
Area X L1contraSCL10L12
Spinal cord layer 5 L1contraSCL5L12
Spinal cord layer 6 L1contraSCL6L12
Spinal cord layer 3 L1contraSCL3L12
Spinal cord layer 4 L1contraSCL4L12
Spinal cord layer 1 L1contraSCL1L12
Spinal cord layer 2 L1contraSCL2L12
Spinal cord layer 7 L1contraSCL7L12
Lateral spinal nucleus L2contraLSpL2-0.5
Area X L2contraSCL10L22
Spinal cord layer 5 L2contraSCL5L22
Spinal cord layer 6 L2contraSCL6L22
Spinal cord layer 3 L2contraSCL3L22
Spinal cord layer 4 L2contraSCL4L22
Spinal cord layer 1 L2contraSCL1L22
Spinal cord layer 2 L2contraSCL2L22
Spinal cord layer 7 L2contraSCL7L22
Lateral spinal nucleus L3contraLSpL3-0.5
Area X L3contraSCL10L32
Spinal cord layer 5 L3contraSCL5L32
Spinal cord layer 6 L3contraSCL6L32
Spinal cord layer 3 L3contraSCL3L32
Spinal cord layer 4 L3contraSCL4L32
Spinal cord layer 1 L3contraSCL1L32
Spinal cord layer 2 L3contraSCL2L32
Spinal cord layer 7 L3contraSCL7L32
Lateral spinal nucleus L4contraLSpL4-0.5
Area X L4contraSCL10L42
Spinal cord layer 5 L4contraSCL5L42
Spinal cord layer 6 L4contraSCL6L42
Spinal cord layer 3 L4contraSCL3L42
Spinal cord layer 4 L4contraSCL4L42
Spinal cord layer 1 L4contraSCL1L42
Spinal cord layer 2 L4contraSCL2L42
Spinal cord layer 7 L4contraSCL7L42
Lateral spinal nucleus L5contraLSpL5-0.5
Area X L5contraSCL10L52
Spinal cord layer 5 L5contraSCL5L52
Spinal cord layer 6 L5contraSCL6L52
Spinal cord layer 3 L5contraSCL3L52
Spinal cord layer 4 L5contraSCL4L52
Spinal cord layer 1 L5contraSCL1L52
Spinal cord layer 2 L5contraSCL2L52
Spinal cord layer 7 L5contraSCL7L52
Lateral spinal nucleus L6contraLSpL6-0.5
Area X L6contraSCL10L62
Spinal cord layer 5 L6contraSCL5L62
Spinal cord layer 6 L6contraSCL6L62
Spinal cord layer 3 L6contraSCL3L62
Spinal cord layer 4 L6contraSCL4L62
Spinal cord layer 1 L6contraSCL1L62
Spinal cord layer 2 L6contraSCL2L62
Spinal cord layer 7 L6contraSCL7L62
Lateral spinal nucleus S1contraLSpS1-0.5
Area X S1contraSCL10S12
Spinal cord layer 5 S1contraSCL5S12
Spinal cord layer 6 S1contraSCL6S12
Spinal cord layer 3 S1contraSCL3S12
Spinal cord layer 4 S1contraSCL4S12
Spinal cord layer 1 S1contraSCL1S12
Spinal cord layer 2 S1contraSCL2S12
Spinal cord layer 7 S1contraSCL7S12
Lateral spinal nucleus S2contraLSpS2-0.5
Area X S2contraSCL10S22
Spinal cord layer 5 S2contraSCL5S22
Spinal cord layer 6 S2contraSCL6S22
Spinal cord layer 3 S2contraSCL3S22
Spinal cord layer 4 S2contraSCL4S22
Spinal cord layer 1 S2contraSCL1S22
Spinal cord layer 2 S2contraSCL2S22
Spinal cord layer 7 S2contraSCL7S22
Lateral spinal nucleus S3contraLSpS3-0.5
Lateral spinal nucleus S4contraLSpS4-0.5
Central grayipsiCG-0.5
Central grey rostral midbrainipsirmCG0
Middle central gray mesencephalic partipsiCGMi0
Medial longitudinal fasciculusipsimlf-2
Periventricular gray matteripsiPVG-0.5
Mesopontine tegmental area caudal partipsiTGAmc1.5
Mesopontine tegmental area dorsal partipsiTGAmd1.5
Mesopontine tegmental area mid-levelipsiTGAmm1
Mesopontine tegmental area rostral partipsiTGAmr1.5
Mesopontine tegmental area ventral partipsiTGAmv0
Substantia nigra A9ipsiSN-0.5
Substantia nigra compact partipsiSNC3
Substantia nigra compact part medial tieripsiSNCM0
Substantia nigra lateral partipsiSNL1
Substantia nigra medial partipsiSNM2
Substantia nigra reticular partipsiSNR1
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 lateral partipsiVTAL2
Retrorubral nucleusipsiRR1
Laterodorsal tegmental nucleusipsiLDTg2
Ventral tegmental nucleusipsiVTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg2
Pedunculopontine tegmental nucleus caudal partipsiPPTgC1
Pedunculopontine tegmental nucleus dorsal partipsiPPTgd1.5
Pedunculopontine tegmental nucleus mid levelipsiPPTgmL1
Pedunculopontine tegmental nucleus rostral partipsiPPTgR1.5
Pedunculopontine tegmental nucleus ventral partipsiPPTgv0
A4 noradrenaline cellsipsiA40.5
Locus coeruleusipsiLC-0.5
Intermediate part of the anterior pole of the locus coeruleusipsiLCimap0
Dorsal part of the anterior pole of the locus coeruleusipsiLCda2
Locus coeruleus dorsal partipsiLCD3
Ventral part of the posterior pole of the locus coeruleusipsiLCvp0
Intermediate part of the posterior pole of the locus coeruleusipsiLCip0
Dorsal part of the posterior pole of the locus coeruleusipsiLCdp2
Locus coeruleus ventromedial partipsiVMLC0
Prelocus coeruleus nucleusipsiPLC-0.5
Reticulotegmental nucleus of the ponsipsiRtTg-0.5
Reticulotegmental nucleus of the pons medial partipsiRtTgm1
Reticular systemipsiRF-0.5
Deep mesencephalic nucleusipsiDpMe0
Parabrachial nucleusipsiPB-0.5
Dorsal lateral parabrachial nucleusipsiPBDoL-0.5
Parabrachial nucleus medialipsiPBnMe-0.5
Subcoeruleus nucleusipsiSubC0
C3 adrenaline cellsipsiC3-10
Nucleus of the solitary tract caudal partipsiSolca1
Raphe nucleiipsiRAN1
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm-0.5
Dorsal raphe nucleus medial partipsiDRNM2
Dorsal raphe nucleus ventromedial subdivisionipsiDRvme-0.5
Linear oral nucleus of the rapheipsiLIOR-0.5
Median raphe nucleusipsiMnR3
Medial raphe nucleusipsiMeR2
Superior central raphe nucleusipsiCS2
Median raphe nucleus peripheral partipsiMnRpe3
Median raphe nucleus medial partipsiMnRm1
Pontine raphe nucleusipsiPnR1
Raphe magnus nucleusipsiRMg1
Raphe magnus nucleus dorsal partipsiDRMg0
Raphe magnus nucleus rostral partipsiRMgR-0.5
Raphe nuclei rostral partipsiRANR2
Ventral portion of the raphe nucleiipsiRANV3
Caudal medulla oblongata ventral regionipsiCMeObV-0.5
Islands of CallejaipsiICj1
Basal nucleus MeynertipsiB2
Preoptic regionipsiPREO3
Tuberomammillary nucleusipsiTuM2
Vascular organ of the lamina terminalisipsiVOLT-0.5
HypothalamusipsiHYPO-2
Dorsomedial hypothalamic nucleusipsiDMHy2
Dorsal regionipsiDHR0
Preoptic anterior regionipsiPAreg3
Lateral zoneipsiLHA3
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area anterior partipsiLHAa-0.5
Posterior region [Medial division of the hypothalamus]ipsiPRegM1
Medial zoneipsiMHA-0.5
Anterior hypothalamic areaipsiAHA4
Anterior hypothalamic area dorsal part of central condensationipsiAHACdc-0.5
Anterior hypothalamic area ventral part of central condensationipsiAHACv-0.5
Anterior hypothalamic nucleusipsiAHn3
Area lateralis hypothalamicus posterior [Regio hypothalamus caudalis]ipsiDMrhc3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus central partipsiVMHC1
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM-0.5
Ventromedial hypothalamic nucleus posterior partipsiVMHP-0.5
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL-0.5
Paraventricular hypothalamic nucleusipsiPa2
Supraoptic regionipsiSoR3
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Supraoptic hypothalamic partipsiSOHYP3
Mammillothalamic tractipsimt3
Premammillary nucleus dorsal partipsiPMD0.5
Premammillary nucleus ventral partipsiPMV-0.5
Supramammillar nucleusipsiSuM3
Supramammillar nucleus lateral partipsiSuML-0.5
A8 dopamine cells retrorubral groupipsiRRF-0.5
Basal retrochiasmatic areaipsiBRCh1
Posterior limitans thalamic nucleusipsiPLi0.5
Posterior thalamic nuclear group triangular partipsiPoT0.5
Paratenial thalamic nucleusipsiPT1
Paraventricular thalamic nucleusipsiPV2
Reuniens thalamic nucleusipsiRe1
Reticular thalamic nucleusipsiRt2
Zona incertaipsiZI-0.5
Zona incerta lateral partipsiZIL0
Medial lemniscusipsiml-0.5
Amygdaloid complexipsiAC1
Laterobasal nuclear complexipsiLBNC2
Basal nucleusipsiBnc2
Basomedial amygdaloid nucleusipsiBM2
Posterior basomedial nucleusipsiBMP-0.5
Lateral amygdaloid nucleusipsiLA1
Central extended amygdala groupipsiCEXA2
Central amygdaloid nucleusipsiCe2
Cortex amygdala transition zoneipsiCxA0
Amygdalopiriform transition area anterolateral partipsiAPir_AL1
Cortical amygdaloid nucleusipsiCAn1
Posterolateral cortical nucleusipsiPLCo2
Medial amygdaloid nucleusipsiMe2
Accumbens nucleusipsiAc1
Caudate putamenipsiCPu0
HippocampusipsiHIPP-0.5
Hippocampal inferior regionipsiHIPPiR-0.5
Dentate gyrusipsiDG-0.5
Hilus of the dentate gyrusipsiHil2
Ammon hornipsiAmH-0.5
Field CA1 of hippocampusipsiCA14
Distal field CA1 of hippocampus pyramidal cell layeripsiDCA1py2
Distal field CA1 of hippocampus superficial pyramidal cell layeripsiDCA1spy2
Field CA1 of hippocampus layer stratum radiatum retrohippocampal neuronsipsiCA1L5srrhn0
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr3
Field CA1 of hippocampus layer stratum pyramidale superficialipsiCA1L3sps-0.5
Field CA1 of hippocampus layer stratum pyramidale double projections cellsipsiCA1L3spdpc-0.5
Field CA1 of hippocampus layer deep part of the stratum oriensipsiCA1L2dso2
Field CA1 of hippocampus layer stratum oriens double projection cellsipsiCA1L2sodpc-0.5
Field CA1 of hippocampus layer stratum oriens retrohippocampal neuronsipsiCA1L2sorhn0
Field CA1 of hippocampus mid levelipsiCA1mi-0.5
Field CA1 of hippocampus temporal poleipsiCA1tp3
Proximal field CA1 of hippocampusipsiPCA11
Proximal field CA1 of hippocampus deep pyramidal cell layeripsiPCA1dpy-0.5
Proximal field CA1 of hippocampus superficial pyramidal cell layeripsiPCA1spy0
CA1 domain 1 stratum oriensipsiCA1do1so-0.5
Field CA1 of hippocampus lateral part ipsiCA1Lat-0.5
Field CA2 of hippocampusipsiCA2-0.5
Field CA2 of hippocampus layer stratum pyramidaleipsiCA2pyr-0.5
Field CA2 of hippocampus border of stratum oriens and stratum pyramidaleipsiCA2Lorpy3
Field CA3 of hippocampusipsiCA3-0.5
Distal field CA3 of hippocampus mossy fiber zoneipsiDCA3mfz3
Distal field CA3 of hippocampus deep pyramidal cell layeripsiDCA3dpy2
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr-0.5
Field CA3 of hippocampus layer stratum pyramidale pyramidal neuronsipsiCA3L3spy-0.5
Field CA3 of hippocampus layer deep part of the stratum oriensipsiCA3L2dso2
Proximal field CA3 of hippocampus mossy fiber zoneipsiPCA3mfz3
Proximal field CA3 of hippocampus pyramidal cell layeripsiPCA3py1
Septal part of the field CA3 of hippocampusipsiSCA3-0.5
Field CA3a of hippocampusipsiCA3a-0.5
Field CA3a of hippocampus border of stratum oriens and stratum pyramidaleipsiCA3aLorpy3
Field CA3a of hippocampus pyramidal cell layeripsiCA3aLpy-0.5
Field CA3b of hippocampusipsiCA3b-0.5
Field CA3b of hippocampus stratum pyramidaleipsiCA3bpy-0.5
SubiculumipsiS4
ProsubiculumipsiProS3
Prosubiculum superficial layersipsiProSLs-0.5
Prosubiculum deep layersipsiProSLd-0.5
Molecular layer of the subiculumipsiSumo-0.5
Posterior hippocampus layer 5 pyramidal cellsipsiHIPPpoL5pyc-0.5
Subicular cortex border to CA1ipsiHIPPbCA13
Granular layer of the dentate gyrusipsiGrDG0
Oriens layer of the hippocampusipsiOr-0.5
Stratum radiatum of the hippocampusipsiRad-0.5
Columns of the fornixipsicoLf-2
PresubiculumipsiPrS-0.5
Presubiculum layer 2ipsiPrSL22
Presubiculum layer 3ipsiPrSL32
Presubiculum layer 5ipsiPrSL52
Parasubiculum superficial layer 2ipsiPaSsL22
Parasubiculum superficial layer 3ipsiPaSsL32
Entorhinal cortexipsiEnt-0.5
Lateral entorhinal cortexipsiLEnt2
Medial entorhinal cortexipsiMEnt1
Medial entorhinal cortex layer 4ipsiMEntLyL41
Piriform cortexipsiPir0
Retrosplenial agranular cortexipsiRSA1
Cingulate cortex area 1ipsiCg11
Cingulate cortex layer 1ipsiCgL11
Prelimbic cortexipsiPrL3
Prelimbic cortex ventral partipsiPrLv1.5
Infralimbic cortexipsiIL3
Temporal association area 2 ventral partipsiTe2V-0.5
Agranular insular cortex dorsal partipsiAID-1
Perirhinal cortexipsiA35-0.5
Dorsal peduncular cortexipsiDP1.5
Ventral peduncular cortexipsiPCv1.5
Ventral medial prefrontal cortexipsivmPFC1.5
Medial orbital cortexipsiMO1.5
Medial orbital cortex deep layersipsiMOcxdL-0.5
Interpeduncular nucleusipsiIP-0.5
Interpeduncular nucleus apical subnucleusipsiIPA3
Interpeduncular nucleus caudal subnucleusipsiIPC-0.5
Ventral corners of the caudalmost lateral interpeduncular nucleusipsiVIPCML1
Interpeduncular nucleus rostral subnucleus midrostrocaudal partipsiIPRmrc-0.5
Olfactory tubercleipsiTuO0
Lateral spinal nucleus C1ipsiLSpC1-0.5
Area X C1ipsiSCL10C11
Spinal cord layer 5 C1ipsiSCL5C11
Spinal cord layer 6 C1ipsiSCL6C11
Spinal cord layer 3 C1ipsiSCL3C11
Spinal cord layer 4 C1ipsiSCL4C11
Spinal cord layer 1 C1ipsiSCL1C11
Spinal cord layer 2 C1ipsiSCL2C11
Spinal cord layer 7 C1ipsiSCL7C11
Lateral spinal nucleus C2ipsiLSpC2-0.5
Area X C2ipsiSCL10C21
Spinal cord layer 5 C2ipsiSCL5C21
Spinal cord layer 6 C2ipsiSCL6C21
Spinal cord layer 3 C2ipsiSCL3C21
Spinal cord layer 4 C2ipsiSCL4C21
Spinal cord layer 1 C2ipsiSCL1C21
Spinal cord layer 2 C2ipsiSCL2C21
Spinal cord layer 7 C2ipsiSCL7C21
Lateral spinal nucleus C3ipsiLSpC3-0.5
Area X C3ipsiSCL10C31
Spinal cord layer 5 C3ipsiSCL5C31
Spinal cord layer 6 C3ipsiSCL6C31
Spinal cord layer 3 C3ipsiSCL3C31
Spinal cord layer 4 C3ipsiSCL4C31
Spinal cord layer 1 C3ipsiSCL1C31
Spinal cord layer 2 C3ipsiSCL2C31
Spinal cord layer 7 C3ipsiSCL7C31
Lateral spinal nucleus C4ipsiLSpC4-0.5
Area X C4ipsiSCL10C41
Spinal cord layer 5 C4ipsiSCL5C41
Spinal cord layer 6 C4ipsiSCL6C41
Spinal cord layer 3 C4ipsiSCL3C41
Spinal cord layer 4 C4ipsiSCL4C41
Spinal cord layer 1 C4ipsiSCL1C41
Spinal cord layer 2 C4ipsiSCL2C41
Spinal cord layer 7 C4ipsiSCL7C41
Lateral spinal nucleus C5ipsiLSpC5-0.5
Area X C5ipsiSCL10C51
Spinal cord layer 5 C5ipsiSCL5C51
Spinal cord layer 6 C5ipsiSCL6C51
Spinal cord layer 3 C5ipsiSCL3C51
Spinal cord layer 4 C5ipsiSCL4C51
Spinal cord layer 1 C5ipsiSCL1C51
Spinal cord layer 2 C5ipsiSCL2C51
Spinal cord layer 7 C5ipsiSCL7C51
Lateral spinal nucleus C6ipsiLSpC6-0.5
Area X C6ipsiSCL10C61
Spinal cord layer 5 C6ipsiSCL5C61
Spinal cord layer 6 C6ipsiSCL6C61
Spinal cord layer 3 C6ipsiSCL3C61
Spinal cord layer 4 C6ipsiSCL4C61
Spinal cord layer 1 C6ipsiSCL1C61
Spinal cord layer 2 C6ipsiSCL2C61
Spinal cord layer 7 C6ipsiSCL7C61
Lateral spinal nucleus C7ipsiLSpC7-0.5
Area X C7ipsiSCL10C71
Spinal cord layer 5 C7ipsiSCL5C71
Spinal cord layer 6 C7ipsiSCL6C71
Spinal cord layer 3 C7ipsiSCL3C71
Spinal cord layer 4 C7ipsiSCL4C71
Spinal cord layer 1 C7ipsiSCL1C71
Spinal cord layer 2 C7ipsiSCL2C71
Spinal cord layer 7 C7ipsiSCL7C71
Lateral spinal nucleus C8ipsiLSpC8-0.5
Area X C8ipsiSCL10C81
Spinal cord layer 5 C8ipsiSCL5C81
Spinal cord layer 6 C8ipsiSCL6C81
Spinal cord layer 3 C8ipsiSCL3C81
Spinal cord layer 4 C8ipsiSCL4C81
Spinal cord layer 1 C8ipsiSCL1C81
Spinal cord layer 2 C8ipsiSCL2C81
Spinal cord layer 7 C8ipsiSCL7C81
Lateral spinal nucleus T1ipsiLSpT1-0.5
Lateral spinal nucleus T2ipsiLSpT2-0.5
Lateral spinal nucleus T3ipsiLSpT3-0.5
Lateral spinal nucleus T4ipsiLSpT4-0.5
Area X T4ipsiSCL10T41
Spinal cord layer 5 T4ipsiSCL5T41
Spinal cord layer 6 T4ipsiSCL6T41
Spinal cord layer 3 T4ipsiSCL3T41
Spinal cord layer 4 T4ipsiSCL4T41
Spinal cord layer 1 T4ipsiSCL1T41
Spinal cord layer 2 T4ipsiSCL2T41
Spinal cord layer 7 T4ipsiSCL7T41
Lateral spinal nucleus T5ipsiLSpT5-0.5
Lateral spinal nucleus T6ipsiLSpT6-0.5
Area X T6ipsiSCL10T61
Spinal cord layer 5 T6ipsiSCL5T61
Spinal cord layer 6 T6ipsiSCL6T61
Spinal cord layer 3 T6ipsiSCL3T61
Spinal cord layer 4 T6ipsiSCL4T61
Spinal cord layer 1 T6ipsiSCL1T61
Spinal cord layer 2 T6ipsiSCL2T61
Spinal cord layer 7 T6ipsiSCL7T61
Lateral spinal nucleus T7ipsiLSpT7-0.5
Lateral spinal nucleus T8ipsiLSpT8-0.5
Area X T8ipsiSCL10T81
Spinal cord layer 5 T8ipsiSCL5T81
Spinal cord layer 6 T8ipsiSCL6T81
Spinal cord layer 3 T8ipsiSCL3T81
Spinal cord layer 4 T8ipsiSCL4T81
Spinal cord layer 1 T8ipsiSCL1T81
Spinal cord layer 2 T8ipsiSCL2T81
Spinal cord layer 7 T8ipsiSCL7T81
Lateral spinal nucleus T9ipsiLSpT9-0.5
Lateral spinal nucleus T10ipsiLSpT10-0.5
Lateral spinal nucleus T11ipsiLSpT11-0.5
Lateral spinal nucleus T12ipsiLSpT12-0.5
Area X T12ipsiSCL10T121
Spinal cord layer 5 T12ipsiSCL5T121
Spinal cord layer 6 T12ipsiSCL6T121
Spinal cord layer 3 T12ipsiSCL3T121
Spinal cord layer 4 T12ipsiSCL4T121
Spinal cord layer 1 T12ipsiSCL1T121
Spinal cord layer 2 T12ipsiSCL2T121
Spinal cord layer 7 T12ipsiSCL7T121
Lateral spinal nucleus T13ipsiLSpT13-0.5
Lateral spinal nucleus L1ipsiLSpL1-0.5
Area X L1ipsiSCL10L11
Spinal cord layer 5 L1ipsiSCL5L11
Spinal cord layer 6 L1ipsiSCL6L11
Spinal cord layer 3 L1ipsiSCL3L11
Spinal cord layer 4 L1ipsiSCL4L11
Spinal cord layer 1 L1ipsiSCL1L11
Spinal cord layer 2 L1ipsiSCL2L11
Spinal cord layer 7 L1ipsiSCL7L11
Lateral spinal nucleus L2ipsiLSpL2-0.5
Area X L2ipsiSCL10L21
Spinal cord layer 5 L2ipsiSCL5L21
Spinal cord layer 6 L2ipsiSCL6L21
Spinal cord layer 3 L2ipsiSCL3L21
Spinal cord layer 4 L2ipsiSCL4L21
Spinal cord layer 1 L2ipsiSCL1L21
Spinal cord layer 2 L2ipsiSCL2L21
Spinal cord layer 7 L2ipsiSCL7L21
Lateral spinal nucleus L3ipsiLSpL3-0.5
Area X L3ipsiSCL10L31
Spinal cord layer 5 L3ipsiSCL5L31
Spinal cord layer 6 L3ipsiSCL6L31
Spinal cord layer 3 L3ipsiSCL3L31
Spinal cord layer 4 L3ipsiSCL4L31
Spinal cord layer 1 L3ipsiSCL1L31
Spinal cord layer 2 L3ipsiSCL2L31
Spinal cord layer 7 L3ipsiSCL7L31
Lateral spinal nucleus L4ipsiLSpL4-0.5
Area X L4ipsiSCL10L41
Spinal cord layer 5 L4ipsiSCL5L41
Spinal cord layer 6 L4ipsiSCL6L41
Spinal cord layer 3 L4ipsiSCL3L41
Spinal cord layer 4 L4ipsiSCL4L41
Spinal cord layer 1 L4ipsiSCL1L41
Spinal cord layer 2 L4ipsiSCL2L41
Spinal cord layer 7 L4ipsiSCL7L41
Lateral spinal nucleus L5ipsiLSpL5-0.5
Area X L5ipsiSCL10L51
Spinal cord layer 5 L5ipsiSCL5L51
Spinal cord layer 6 L5ipsiSCL6L51
Spinal cord layer 3 L5ipsiSCL3L51
Spinal cord layer 4 L5ipsiSCL4L51
Spinal cord layer 1 L5ipsiSCL1L51
Spinal cord layer 2 L5ipsiSCL2L51
Spinal cord layer 7 L5ipsiSCL7L51
Lateral spinal nucleus L6ipsiLSpL6-0.5
Area X L6ipsiSCL10L61
Spinal cord layer 5 L6ipsiSCL5L61
Spinal cord layer 6 L6ipsiSCL6L61
Spinal cord layer 3 L6ipsiSCL3L61
Spinal cord layer 4 L6ipsiSCL4L61
Spinal cord layer 1 L6ipsiSCL1L61
Spinal cord layer 2 L6ipsiSCL2L61
Spinal cord layer 7 L6ipsiSCL7L61
Lateral spinal nucleus S1ipsiLSpS1-0.5
Area X S1ipsiSCL10S11
Spinal cord layer 5 S1ipsiSCL5S11
Spinal cord layer 6 S1ipsiSCL6S11
Spinal cord layer 3 S1ipsiSCL3S11
Spinal cord layer 4 S1ipsiSCL4S11
Spinal cord layer 1 S1ipsiSCL1S11
Spinal cord layer 2 S1ipsiSCL2S11
Spinal cord layer 7 S1ipsiSCL7S11
Lateral spinal nucleus S2ipsiLSpS2-0.5
Area X S2ipsiSCL10S21
Spinal cord layer 5 S2ipsiSCL5S21
Spinal cord layer 6 S2ipsiSCL6S21
Spinal cord layer 3 S2ipsiSCL3S21
Spinal cord layer 4 S2ipsiSCL4S21
Spinal cord layer 1 S2ipsiSCL1S21
Spinal cord layer 2 S2ipsiSCL2S21
Spinal cord layer 7 S2ipsiSCL7S21
Lateral spinal nucleus S3ipsiLSpS3-0.5
Lateral spinal nucleus S4ipsiLSpS4-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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