University of Rostock

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Rat connectome



Periaqueductal gray rostrocaudal extent right


Abbreviation
PAGroe
Color       
Superior regionsPeriaqueductal gray

SynonymsAbbr.Language
Rostrocaudal extent of the midbrain periaqueductal gray Eng
Rostrocaudal extent of the periaqueductal gray Eng
Rostrocaudal periaqueductal gray Eng
Periaqueductal gray rostrocaudal part Eng
Periaqueductal gray rostrocaudal extentPAGroeEng

SubregionsSide
Rostrocaudal axis of the periaqueductal grayright

Output to

NameSideAbbr.WeightDetails
Ventrolateral periaqueductal graycontraVLPAG-0.5
Centrolateral thalamic nucleuscontraCL3
Parafascicular thalamic nucleuscontraPF3
Mediodorsal thalamic nucleus medial partcontraMDM3
Superior colliculusipsiSC3
Substantia nigra compact partipsiSNC1
Ventral tegmental area A10ipsiVTA2
Lateral reticular nucleusipsiLRt-0.5
Ambiguus nucleusipsiAmb-0.5
Facial nucleusipsi72
Raphe magnus nucleusipsiRMg-0.5
Rostral ventrolateral medullaipsiRVLM-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm3
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the vertical limb of the diagonal bandipsiVDB2
Medial septal nucleusipsiMS0.5
Basal nucleus MeynertipsiB1
Substantia innominata rostral aspectipsiSIr1
Preoptic regionipsiPREO2
Lateral preoptic areaipsiLPO1
Lateral preoptic area medial partipsiLPOm2
Medial preoptic area lateral partipsiMPAL2
Medial preoptic nucleusipsiMPO1
Lateral hypothalamic areaipsiLH1
Anterior hypothalamic areaipsiAHA3
Anterior hypothalamic area central partipsiAHAC3
Dorsal hypothalamic areaipsiDA3
Dorsal hypothalamic nucleusipsiDo3
Posterior hypothalamic nucleusipsiPH-0.5
Ventral hypothalamic regionipsiVHR1
A8 dopamine cells retrorubral groupipsiRRF2
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL3
Paracentral thalamic nucleusipsiPC1
Parafascicular thalamic nucleusipsiPF3
Rhomboid thalamic nucleusipsiRh1
Intermediodorsal thalamic nucleusipsiIMD1
Mediodorsal thalamic nucleus medial partipsiMDM3
Paraventricular thalamic nucleusipsiPV2
Paraventricular thalamic nucleus posterior partipsiPVP2
Reuniens thalamic nucleusipsiRe1
Parafascicular nucleusipsiPFa1
Zona incertaipsiZI3
Bed nucleus of the stria terminalisipsiBST0
Bed nucleus of the stria terminalis lateral divisionipsiBSTL-0.5

Input from

NameSideAbbr.WeightDetails
Ventral midbrain tegmentumipsiVeMT1
Transitional region between ventral tegmental area and the medial substantia nigra pars compactaipsiTRVTAmSNC1
Ventrolateral tegmental areaipsiVLTg1
Pontine reticular nucleusipsiPRN1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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