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Rat connectome



Amygdalostriatal transition area left


Abbreviation
AStr
Color       
Superior regionsUnclassified cell group

SynonymsAbbr.Language
Amygdalostriatal transition zoneAstr 
Amygdalostriatal junction Eng
Amygdalo-striatal transition zone  
 AStEng
Amygdalostriatal zone  
Amygdalostriatal transition areaAStrEng

SubregionsSide
Amygdalostriatal transition area caudal partleft
Amygdalostriatal transition area intermediolateral partleft
Amygdalostriatal transition area middle third partleft
Amygdalostriatal transition area posterior partleft
Amygdalostriatal transition area rostral partleft
Amygdalostriatal transition area rostrocaudal partleft
Amygdalostriatal transition area rostromedial partleft
Rostrolateral part of the amygdalostriatal transition arealeft

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG1
Substantia nigra lateral partipsiSNL1.5
Lateral parabrachial nucleus external partipsiLPBE-1
Suprageniculate thalamic nucleusipsiSG-0.5
Posterior intralaminar thalamic nucleusipsiPIL-0.5
Subparafascicular thalamic nucleusipsiSPF-0.5
Basolateral amygdaloid nucleusipsiBL-0.5
Basomedial amygdaloid nucleusipsiBM-0.5
Dorsolateral part of the lateral nucleusipsiLaDL-0.5
Bed nucleus of the stria terminalisipsiBST1
Central amygdaloid nucleusipsiCe-1
Posteromedial cortical nucleusipsiPMCo-0.5
Caudal globus pallidusipsiGPc1.5
Caudal globus pallidus ventromedial partipsiGPcvm3
Perirhinal cortexipsiA351
Medial geniculate nucleus medial partipsiMGM-0.5
Periaqueductal graycontraPAG0
Substantia nigra lateral partcontraSNL0
Bed nucleus of the stria terminaliscontraBST0
Caudal globus palliduscontraGPc0
Perirhinal cortexcontraA350

Input from

NameSideAbbr.WeightDetails
Substantia nigra compact partipsiSNC-0.5
Substantia nigra lateral partipsiSNL2
Ventral tegmental area A10ipsiVTA-0.5
Peripeduncular nucleusipsiPP-0.5
A4 noradrenaline cellsipsiA4-0.5
A5 noradrenaline cellsipsiA5-0.5
A7 noradrenaline cellsipsiA7-0.5
Locus coeruleusipsiLC-0.5
Lateral parabrachial nucleusipsiLPB-0.5
Lateral parabrachial nucleus external partipsiLPBE3
Parabrachial nucleus lateral crescentipsiPBlc3
Parabrachial nucleus external divison lateral partipsiPBeDL0
Medial parabrachial nucleus external partipsiMPBE3
A1 noradrenergic cellsipsiA1-0.5
A2 noradrenergic cellsipsiA2-0.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
A8 dopamine cells retrorubral groupipsiRRF2
Retroethmoid nucleusipsiREth-0.5
Posterior thalamic nuclear groupipsiPo-0.5
Posterior thalamic nuclear group medial partipsiPoMe-0.5
Posterior thalamic nuclear group triangular partipsiPoT3
Posterior thalamic nuclear group triangular part nociceptive nonspecific neuronsipsiPoTNS-0.5
Suprageniculate thalamic nucleusipsiSG2
Ventral posterior thalamic nucleus parvicellular partipsiVPPC-0.5
Posterior intralaminar thalamic nucleusipsiPIL3
Posterior intralaminar thalamic nucleus lateralmost partipsiPILlm-0.5
Caudomedial lateral posterior thalamic nucleusipsiLPcm2
Medial part of the mediocaudal part of the lateral posterior thalamic nucleusipsiLPcmm2
Medial part of the lateral posterior thalamic nucleus mediocaudal partipsiLPMCM2
Posterior parathalamic nucleiipsiPPaTn2
Subparafascicular thalamic nucleusipsiSPF1
Lateral subparafascicular thalamic nucleusipsiSPFL2
Caudal part of the lateral subparafascicular thalamic nucleusipsiSPFLC-0.5
Subparafascicular thalamic nucleus rostral partipsiSPFr2
Dorsal bank of rhinal fissureipsiDBrf2
Ventral bank of the rhinal fissureipsiVBrf2
Ventral bank of the rhinal fissure dorsal partipsiVBrfD0.5
Basal nucleusipsiBnc2
Accessory basal nucleus magnocellular divisionipsiABm1
Accessory basal nucleus parvicellular divisionipsiABp3
Basal nucleus magnocellular partipsiBmc1
Basal nucleus parvicellular partipsiBpc1
Dorsolateral part of the lateral nucleusipsiLaDL2
Medial division of the ventrolateral part of the lateral nucleusipsiLAVLm3
Central amygdaloid nucleusipsiCe0
Lateral capsular subdivision of the central nucleus of the amygdalaipsiCeLac-2
Amygdalopiriform transition areaipsiAPir1
Anterior cortical amygdaloid nucleusipsiACo0
Posterior amygdaloid nucleusipsiCOAp0
Medial amygdaloid nucleus anterodorsal partipsiMeAD3
Medial amygdaloid nucleus anteroventral partipsiMeAV3
Medial amygdaloid nucleus posterodorsal partipsiMePD0
Medial amygdaloid nucleus posteroventral partipsiMePV-0.5
Caudal globus pallidusipsiGPc3
Subiculum ventral partipsiSv1
Rostral ventrolateral entorhinal areaipsirVLEA2
Lateral entorhinal cortexipsiLEnt-0.5
Caudal entorhinal field 1ipsiCEnt12
Prelimbic cortexipsiPrL2
Infralimbic cortexipsiIL3
Infralimbic cortex layer 2ipsiILL22
Infralimbic cortex layer 5ipsiILL52
Infralimbic cortex layer 3ipsiILL32
Infralimbic cortex layer 4ipsiILL42
Temporal association area 2ipsiTe22
Temporal association area 3ipsiTe32
Temporal association area 3 anterior partipsiTe3A1
Temporal association area 3 posterior partipsiTe3P1
Temporal association area 3 ventral partipsiTe3V3
Temporal association cortex 1ipsiTeA-0.5
Auditory regionsipsiAU-0.5
Agranular insular cortex dorsal partipsiAID1
Agranular insular cortex rostral partipsiRAIC2
Agranular insular cortex ventral partipsiAIV1
Dysgranular insular cortexipsiDI3
Perirhinal cortexipsiA352
Dorsal peduncular cortexipsiDP2
Secondary somatosensory cortexipsiS21
Secondary visual cortex lateral areaipsiV2L-0.5
Lateral orbital cortexipsiLO-0.5
Medial orbital cortexipsiMO3
Dorsal geniculate nucleus lateral partipsiDLGl2
Medial geniculate nucleus medial partipsiMGM3
Medial geniculate nucleus medial part marginal zoneipsiMGMMa0
Medial geniculate nucleus ventral partipsiMGV2
Basal nucleus intermediate divisioncontraBnci0.5
Temporal association area 3 ventral partcontraTe3V1
Perirhinal cortexcontraA351
Secondary visual cortex lateral areacontraV2L-1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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