University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Basal nucleus magnocellular part left


Abbreviation
Bmc
Color       
Superior regionsBasal nucleus

SynonymsAbbr.Language
Magnocellular division of the basal nucleus  
Basal nucleus magnocellular divisionBmcEng
Basal nucleus magnocellular partBmcEng

SubregionsSide
Basal magnocellular nucleus dorsomedial partleft
Basal magnocellular nucleus lateral partleft
Basal magnocellular nucleus rostral poleleft
Basal magnocellular nucleus rostrodorsal partleft
Basal nucleus magnocellular part rostrocaudal extentleft

Output to

NameSideAbbr.WeightDetails
Central endopiriform systemipsiCEnN1
Rostral endopiriform regionipsiREn1
Islands of Calleja major islandipsiICjM-1
Substantia innominata caudal aspectipsiSIc1
Substantia innominata dorsomedial aspectipsiSIdm1
Substantia innominata rostral aspectipsiSIr1
Substantia innominata ventrolateral aspectipsiSIvl1
Deep amygdaloid complexipsiDAC1
Basal nucleusipsiBnc-3
Accessory basal nucleusipsiAB1
Accessory basal nucleus magnocellular divisionipsiABm1
Accessory basal nucleus parvicellular divisionipsiABp0
Basal nucleus intermediate divisionipsiBnci2
Basal nucleus magnocellular partipsiBmc3
Basal nucleus parvicellular partipsiBpc3
Basolateral amygdaloid nucleusipsiBL2
Posterior basolateral nucleus intermediate subdivisionipsiBLPi3
Lateral amygdaloid nucleusipsiLA1
Dorsolateral part of the lateral nucleusipsiLaDL1
Lateral nucleus medial partipsiLAM1
Ventrolateral part of the lateral nucleusipsiLaVL2
Central amygdaloid nucleusipsiCe-3
Central amygdaloid nucleus intermediate divisionipsiCeI-3
Central amygdaloid nucleus lateral divisionipsiCeL1
Central amygdaloid nucleus lateral division capsular partipsiCeC1
Central amygdaloid nucleus medial divisionipsiCeM1
Anterior amygdaloid areaipsiAA1
Anterior cortical amygdaloid nucleusipsiACo1
Posterior amygdaloid nucleusipsiCOAp1
Posterolateral cortical nucleusipsiPLCo1
Nucleus of the lateral olfactory tractipsiLOT3
Periamygdaloid complexipsiPAC1
Periamygdaloid complex medial divisionipsiPACm1
Periamygdaloid complex sulcal divisionipsiPACs1
Medial amygdaloid nucleusipsiMe-3
Medial amygdaloid nucleus caudal partipsiMeC0
Medial amygdaloid nucleus central dorsal partipsiMeCD1
Medial amygdaloid nucleus central ventral partipsiMeCV1
Medial amygdaloid nucleus rostral partipsiMeRo1
Amygdalohippocampal areaipsiAHi-3
Amygdalohippocampal area lateral partipsiAHilp1
Amygdalohippocampal area medial partipsiAHimp1
Amygdalohippocampal area ventral partipsiAHivp1
Bed nucleus of the accessory olfactory tractipsiBAOT0
Posteromedial cortical nucleusipsiPMCo1
Amygdalostriatal transition areaipsiAStr1
Intercalated nuclei of the amygdalaipsiI2
Rostral part of claustrumipsiRCl2
Accumbens nucleus coreipsiAcbC2
Accumbens nucleus shell caudal partipsiAcbShc-1
Rostral accumbens shellipsiAcbShr-1
Medial accumbensipsiAcbM2
Ventral striatumipsiCPuv2
Fundus of the striatumipsiFS2
AllocortexipsiALLOCX3
HippocampusipsiHIPP2
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr1
Field CA1 of hippocampus layer stratum oriensipsiCA1or1
Field CA2 of hippocampus layer stratum radiatumipsiCA2rad1
Field CA2 of hippocampus layer stratum oriensipsiCA2or1
Field CA3 of hippocampusipsiCA31
SubiculumipsiS2
Entorhinal cortexipsiEnt1.5
Amygdaloentorhinal transitional field 6ipsiAE2
Dorsolateral entorhinal cortexipsiDLEnt2
Piriform cortexipsiPir1
Anterior piriform cortexipsiAPIRC0.5
Frontal association cortexipsiFrA3
Frontal cortex area 1ipsiFr11.5
Frontal cortex area 2ipsiFr21.5
Frontal cortex area 3ipsiFr31.5
Parietal association cortexipsiPtA3
Temporal cortexipsiTE1
Ventral temporal association cortexipsiTev2
Insular cortexipsiICX1.5
Perirhinal cortexipsiA351.5
Perirhinal cortex layer 2ipsiA35L21
Perirhinal cortex layer 3ipsiA35L31
Perirhinal cortex layer 5ipsiA35L52
Perirhinal cortex layer 6ipsiA35L62
Perirhinal cortex rostral partipsiPRro2
Ectorhinal cortexipsiA363
Ectorhinal cortex layer 5ipsiA36L53
Ectorhinal cortex layer 6ipsiA36L63
Visual regionsipsiVR0.5
Olfactory bulb A16ipsiMOB3
Olfactory cortexipsiOcx1
Anterior olfactory nucleus posterior partipsiAONp-1
Lateral olfactory tractipsilot-2
Olfactory tubercleipsiTuO-1
Basal nucleus intermediate divisioncontraBnci3
Basal nucleus magnocellular partcontraBmc2
Basal magnocellular nucleus rostral polecontraBmcR3
Basal nucleus parvicellular partcontraBpc1
Nucleus of the lateral olfactory tract layer 2contraLOTL22
Nucleus of the lateral olfactory tract layer 3contraLOTL32

Input from

NameSideAbbr.WeightDetails
Peduncularpontine nucleus rostral partipsiPPNR-0.5
Nucleus incertus pars compactaipsiNIc3
Basal nucleusipsiBnc-3
Accessory basal nucleusipsiAB-3
Accessory basal nucleus magnocellular divisionipsiABm1
Accessory basal nucleus parvicellular divisionipsiABp1
Basal nucleus intermediate divisionipsiBnci1
Basal nucleus magnocellular partipsiBmc3
Basal nucleus parvicellular partipsiBpc2
Lateral amygdaloid nucleusipsiLA-3
Dorsolateral part of the lateral nucleusipsiLaDL1
Lateral nucleus medial partipsiLAM1
Lateral nucleus midrostrocaudal partipsiLAmr1
Ventrolateral part of the lateral nucleusipsiLaVL0
Central amygdaloid nucleusipsiCe-3
Central amygdaloid nucleus intermediate divisionipsiCeI0
Central amygdaloid nucleus lateral divisionipsiCeL0
Central amygdaloid nucleus lateral division capsular partipsiCeC0
Central amygdaloid nucleus medial divisionipsiCeM0
Amygdalopiriform transition area medial part rostral aspectipsiAPirMr-0.5
Anterior amygdaloid areaipsiAA-3
Anterior cortical amygdaloid nucleusipsiACo1
Posterior amygdaloid nucleusipsiCOAp0
Nucleus of the lateral olfactory tractipsiLOT-3
Periamygdaloid complexipsiPAC-3
Periamygdaloid complex medial divisionipsiPACm-3
Periamygdaloid complex sulcal divisionipsiPACs-3
Medial amygdaloid nucleusipsiMe-3
Medial amygdaloid nucleus caudal partipsiMeC0
Medial amygdaloid nucleus central dorsal partipsiMeCD0
Medial amygdaloid nucleus central ventral partipsiMeCV0
Medial amygdaloid nucleus rostral partipsiMeRo-3
Amygdalohippocampal areaipsiAHi-3
Amygdalohippocampal area lateral partipsiAHilp0
Amygdalohippocampal area medial partipsiAHimp0
Bed nucleus of the accessory olfactory tractipsiBAOT-3
Intercalated nuclei of the amygdalaipsiI-3
Prelimbic cortexipsiPrL0
Infralimbic cortexipsiIL3
Temporal association area 2 dorsal part caudal partipsiTe2DC3
Temporal association area 3ipsiTe3-0.5
Temporal association area 3 rostral partipsiTe3R-0.5
Gustatory dysgranular insular cortexipsiDIg3
Visceral dysgranular insular cortexipsiDIv0
Perirhinal cortexipsiA353
Fundus of the perirhinal cortex xipsiFPRh3
Perirhinal cortex layer 2ipsiA35L23
Perirhinal cortex ventral portionipsiPRhv3
Ectorhinal cortexipsiA361
Dorsal peduncular cortexipsiDP0
Secondary somatosensory cortexipsiS21
Secondary visual cortexipsiV2-1
Basal nucleus intermediate divisioncontraBnci2
Basal nucleus magnocellular partcontraBmc2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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