University of Rostock

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Rat connectome



Fundus of the striatum left


Abbreviation
FS
Color       
Superior regionsStriatum

SynonymsAbbr.Language
Fundus striatum  
Fundus of the striatumFSEng
Fundus striati Lat

SubregionsSide
Fundus of the striatum caudal partleft
Fundus of the striatum lateral partleft
Fundus of the striatum medial partleft
Fundus of the striatum rostral partleft
Fundus of the striatum rostrolateral partleft
Fundus of the striatum caudomedial partleft
Fundus of the striatum ventral partleft

Output to

NameSideAbbr.WeightDetails
Substantia nigra compact partipsiSNC3
Substantia nigra compact part medial tieripsiSNCM2
Substantia nigra compact part rostral tier dorsolateral regionipsiSNCrdL1
Substantia nigra lateral partipsiSNL2
Rostral part of the lateral substantia nigraipsiSNRoL1
Substantia nigra medial partipsiSNM0
Ventral tegmental area A10ipsiVTA1
Ventral tegmental area A10 ventromedial partipsiVTAvm2
Peribrachial regionipsiPBR3
Lateral parabrachial nucleusipsiLPB-0.5
Parabrachial nucleus medialipsiPBnMe-0.5
Dorsal raphe nucleusipsiDR1
Dorsal raphe nucleus caudal partipsiDRC1.5
Dorsal raphe nucleus central partipsiDRcep1.5
Dorsal raphe nucleus lateral wingipsiDRlw1.5
Dorsal raphe nucleus rostral partipsiDRr1.5
Substantia innominataipsiSI1
Substantia innominata dorsal partipsiSID2
Magnocellular preoptic nucleusipsiMCPO1
Suprachiasmatic nucleusipsiSCh2
A8 dopamine cells retrorubral groupipsiRRF0.5
Mediodorsal thalamic nucleus central partipsiMDC0
Mediodorsal thalamic nucleus lateral partipsiMDL-10
Mediodorsal thalamic nucleus medial partipsiMDM0
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL3
Bed nucleus of the stria terminalis medial divisionipsiBSTM3
Central amygdaloid nucleusipsiCe-0.5
Central amygdaloid nucleus dorsolateral partipsiCeDL1
Globus pallidus mediodorsal partipsiGPmd1
Lateral globus pallidusipsiLGP1
Medial globus pallidusipsiMGP1
Ventral pallidum medial partipsiVPm1
Lateral nucleus accumbensipsiAcl-0.5
Caudate putamenipsiCPu-0.5
Fundus of the striatum caudal partipsiFSc-0.5
Fundus of the striatum rostral partipsiFSr-0.5
Parasubthalamic nucleusipsiPSTh0.5
Interpeduncular nucleus rostrodorsal subnucleusipsiIPRrd2
Lateral parabrachial nucleuscontraLPB-0.5
Parabrachial nucleus medialcontraPBnMe-0.5
Bed nucleus of the stria terminalis rostral partcontraBSTro-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG2
Substantia nigra compact part dorsal tieripsiSNCD2
Ventral tegmental area A10ipsiVTA1
Parabrachial pigmented nucleusipsiPBP3
Paranigral nucleusipsiPN3
Peripeduncular areaipsiPPA-0.5
Parabrachial nucleus medialipsiPBnMe2
Parabrachial nucleus medial crescentipsiPBmc1
Parabrachial nucleus waist partipsiPBW1
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Paracentral thalamic nucleusipsiPC1
Parafascicular thalamic nucleusipsiPF-1
Intermediodorsal thalamic nucleusipsiIMD-0.5
Midline group of the dorsal thalamusipsiMTN-1
Paratenial thalamic nucleusipsiPT2
Paraventricular thalamic nucleusipsiPV-0.5
Paraventricular thalamic nucleus anterior partipsiPVA2
Paraventricular thalamic nucleus posterior partipsiPVP2
Ventral posteromedial thalamic nucleus parvicellular partipsiVPMpc-1
Subparafascicular thalamic nucleusipsiSPF2
Subparafascicular thalamic nucleus rostral partipsiSPFr2
Accessory basal nucleus magnocellular divisionipsiABm1
Accessory basal nucleus parvicellular divisionipsiABp1
Basal nucleus magnocellular partipsiBmc2
Basal nucleus parvicellular partipsiBpc2
Anterior basolateral nucleusipsiBLA3
Basolateral nucleus lateral partipsiBLLP-0.5
Basolateral nucleus medial portionipsiBLmp-0.5
Basolateral nucleus rostral partipsiBLRP3
Ventral basolateral nucleusipsiBLV2
Basomedial amygdaloid nucleusipsiBM-0.5
Anterior basomedial nucleusipsiBMA2
Posterior basomedial nucleusipsiBMP1
Lateral amygdaloid nucleusipsiLA-0.5
Dorsolateral part of the lateral nucleusipsiLaDL1
Lateral nucleus medial partipsiLAM1
Central amygdaloid nucleus intermediate divisionipsiCeI1
Central amygdaloid nucleus lateral divisionipsiCeL1
Central amygdaloid nucleus lateral division capsular partipsiCeC1
Central amygdaloid nucleus medial divisionipsiCeM1
Posterior amygdaloid nucleus medial partipsiCOApm2
Posterolateral cortical nucleusipsiPLCo0.5
Nucleus of the lateral olfactory tractipsiLOT-0.5
Caudal periamygdaloid nucleusipsiPACC-0.5
Periamygdaloid cortex layer 2ipsiPACL2-1
Medial amygdaloid nucleus anteroventral partipsiMeAV1
Ventral pallidumipsiVP1
Ventral pallidum lateral partipsiVPlp2
Parasubthalamic nucleusipsiPSTh4
Subthalamic nucleus caudomedial partipsiSThCM-0.5
Subthalamic nucleus medial capipsiSThMc4
Subiculum ventral partipsiSv0.5
Prepiriform cortexipsiPRPIR-1
Anterior cingulate cortexipsiACC2
Cingulate cortex area 1 caudal partipsiCg1c2
Prelimbic cortexipsiPrL-1
Prelimbic cortex deep layersipsiPrLDL3
Prelimbic cortex rostral partipsiPrLr1
Infralimbic cortexipsiIL2
Infralimbic cortex layer 2ipsiILL21
Infralimbic cortex deep layersipsiILDL3
Infralimbic cortex layer 5ipsiILL51
Infralimbic cortex layer 3ipsiILL31
Infralimbic cortex layer 4ipsiILL41
Frontal association cortexipsiFrA2
Insular cortexipsiICX-1
Agranular insular cortex dorsal partipsiAID-1
Agranular insular cortex dorsal part deep layersipsiAIDdL3
Agranular insular cortex posterior part depressor siteipsiAIPd2
Agranular insular cortex posterior deep layersipsiAIPdL3
Agranular insular cortex posterior part pressor siteipsiAIPp3
Agranular insular cortex ventral partipsiAIV2
Agranular insular cortex ventral part layer 3ipsiAIVL32
Agranular insular cortex ventral part layer 5ipsiAIVL52
Agranular insular cortex ventral part layer 6ipsiAIVL62
Perirhinal cortex anterior portionipsiPRha3
Perirhinal cortex anterior portion layer 3ipsiPRhaL32.5
Perirhinal cortex anterior portion layer 3 to layer 5ipsiPRhaL3L52
Perirhinal cortex anterior portion layer 5ipsiPRhaL52.5
Perirhinal cortex anterior portion layer 5 to layer 6ipsiPRhaL5L64
Perirhinal cortex anterior portion layer 6ipsiPRhaL61
Lateral prefrontal cortexipsilPFC2
Medial prefrontal cortexipsimPFC2
Medial agranular prefrontal cortexipsiAGm2
Sensory regionsipsiSR-1
Lateral orbital cortexipsiLO1
Lateral orbital cortex deep layersipsiLOLad1.5
Medial orbital cortexipsiMO1
Medial geniculate nucleusipsiMG-1
Lateral septal nucleus dorsal partipsiLSD-0.5
Central graycontraCG0.5
Parabrachial nucleus medialcontraPBnMe1
Parabrachial nucleus medial crescentcontraPBmc0.5
Parabrachial nucleus waist partcontraPBW0.5
Basal nucleus intermediate divisioncontraBnci1
Anterior basomedial nucleuscontraBMA1
Parasubthalamic nucleuscontraPSTh0
Anterior cingulate cortexcontraACC2
Frontal association cortexcontraFrA2
Agranular insular cortex posterior part pressor sitecontraAIPp1
Perirhinal cortex anterior portioncontraPRha1.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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