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Rat connectome



Field CA3 of hippocampus layer stratum radiatum right


Abbreviation
CA3rad
Color       
Superior regionsField CA3 of hippocampus layers

SynonymsAbbr.Language
 Ca3Rad 
Field CA3 of hippocampus layer stratum radiatumCA3L5sr 
Stratum radiatum of CA3CA3radEng
Stratum radiatum of CA3CA3RadEng

SubregionsSide
Field CA3 of hippocampus layer stratum radiatum adjacent to the extraventricular part of the mossy fiber layerright
Field CA3 of hippocampus layer stratum radiatum projection zoneright
Field CA3 of hippocampus layer stratum radiatum deep zoneright
Field CA3 of hippocampus layer stratum radiatum superifical zoneright
Field CA3 of hippocampus layer stratum radiatum temporal partright
Field CA3 of hippocampus layer stratum radiatum giant cellright
Field CA3 of hippocampus layer stratum radiatum aspiny interneuronsright
Field CA3 of hippocampus layer stratum radiatum at septal levelsright

Output to

NameSideAbbr.WeightDetails
Medial septal nucleuscontraMS-0.5
Dorsal hippocampuscontraHIPPd-0.5
Lateral septal nucleuscontraLS-0.5
Magnocellular basal forebrain neuronal complexipsiMBFNC1
Diagonal band of BrocaipsiDBB1
Medial septal nucleusipsiMS1
Field CA1 of hippocampus layer stratum lacunosum moleculare radiatumipsiCA1lm-0.5
Field CA1 of hippocampus layer stratum radiatumipsiCA1rad-0.5
Field CA1 of hippocampus layer stratum pyramidale double projections cellsipsiCA1L3spdpc-0.5
Field CA1 of hippocampus layer stratum oriensipsiCA1or-0.5
Field CA3 of hippocampus layer stratum pyramidale pyramidal cells near the stratum lucidumipsiCA3L3spPCL-0.5
Field CA3 of hippocampus layer stratum oriensipsiCA3or-0.5
Subiculum dorsal partipsiSd1
Lateral septal nucleusipsiLS2

Input from

NameSideAbbr.WeightDetails
Anterior one-third hippocampal formationcontraAHCfot2
Field CA2 of hippocampus layer stratum pyramidalecontraCA2pyr-0.5
Field CA3 of hippocampuscontraCA32
Lateral part of hippocampuscontraHIPPRL3
Midbrain extrapyramidal areaipsiMEA1
Midline reticular formationipsiMiRF-0.5
Raphe nucleiipsiRAN2
Median raphe nucleusipsiMnR4
Magnocellular basal forebrain neuronal complexipsiMBFNC-0.5
Medial septum dorsal band complexipsiMSDB3
Diagonal band of BrocaipsiDBB3
Nucleus of the horizontal limb of the diagonal bandipsiHDB-0.5
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Medial septal nucleusipsiMS3
Medial septal nucleus medial partipsiMSm-0.5
Substantia innominataipsiSI-0.5
Dorsomedial hypothalamic nucleusipsiDMHy1
Supramammillar nucleusipsiSuM1
Basal nucleusipsiBnc3
Basal nucleus parvicellular partipsiBpc3
Basal nucleus parvicellular part caudomedial regionipsiBpccm3
Posterior basolateral nucleusipsiBLP2
Ventromedial part of the lateral nucleusipsiLaVM2
Amygdalopiriform transition area medial partipsiAPirM1
Dorsal hippocampusipsiHIPPd-0.5
Polymorph layer of the dentate gyrusipsiDGpo-0.5
Hilar mossy cellsipsiHilmc-0.5
Mossy cells in Amarals zone 4ipsiHilagrMc-0.5
Field CA1 of hippocampus layer stratum pyramidale double projections cellsipsiCA1L3spdpc-0.5
Field CA1 of hippocampus layer stratum oriensipsiCA1or-0.5
Field CA2 of hippocampus layer stratum pyramidale secondary axon of pyramidal cellsipsiCA2L3sapy-0.5
Field CA3 of hippocampusipsiCA31
Field CA3 of hippocampus layer stratum lucidum spiny neuronsipsiCA3L4slsp3
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr-0.5
Field CA3 of hippocampus layer stratum pyramidale pyramidal neuronsipsiCA3L3spy4
Field CA3 of hippocampus layer stratum oriensipsiCA3or-0.5
Field CA3 of hippocampus granule cellsipsiCA3Lgc-0.5
Proximal field CA3 of hippocampusipsiPCA33
Field CA3c of hippocampus pyramidal cellsipsiCA3cPC-2
Field CA3a of hippocampus pyramidal cell layer secondary axon of pyramidal cellsipsiCA3aLsapyc-0.5
Field CA3 of hippocampus mid portionipsiCA3mi-0.5
Field CA3 of hippocampus mid septotemporal portionipsiCA3mst3
Medial entorhinal cortexipsiMEnt-0.5
Postpiriform transition areaipsiTR-0.5
Septal regionipsiSER3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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