University of Rostock

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Rat connectome



Dorsal hippocampus left


Abbreviation
HIPPd
Color       
Superior regionsHippocampal regions

SynonymsAbbr.Language
Dorsal hippocampusHIPPd 
Dorsal hippocampal formationHIPPdEng

SubregionsSide
Regio inferior of the dorsal hippocampusleft
Regio superior to the dorsal hippocampal formationleft
Rostral pole of the dorsal hippocampal formationleft
Dorsal hippocampus layersleft

Output to

NameSideAbbr.WeightDetails
Diagonal band of BrocaipsiDBB-0.5
Border of the horizontal and vertical limbs of the diagonal band of BrocaipsiDBBHV3
Medial septal nucleusipsiMS-0.5
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR2
Lateral hypothalamic areaipsiLH2
Lateral mammillary nucleus dorsal partipsiLMd0
Lateral mammillary nucleus ventral partipsiLMv0
Medial mammillary nucleus dorsal partipsiMMnd0
Medial mammillary nucleus ventral partipsiMMV0
ThalamusipsiT3
Anteroventral thalamic nucleusipsiAV3
Midline group of the dorsal thalamusipsiMTN3
Paratenial thalamic nucleusipsiPT3
Reuniens thalamic nucleusipsiRe3
Zona incertaipsiZI2
Nucleus of the fields of ForelipsiF1
Central amygdaloid nucleusipsiCe-0.5
Subthalamic nucleus rostral partipsiSThr0
HippocampusipsiHIPP-0.5
Dentate gyrusipsiDG-0.5
Dentate gyrus molecular layeripsiDGmL-0.5
Granule cell layer of the dentate gyrusipsiDGgL-0.5
Hilus of the dentate gyrusipsiHil-0.5
Field CA1 of hippocampus layer stratum radiatumipsiCA1rad2
Field CA1 of hippocampus layer stratum oriensipsiCA1or3
Field CA3 of hippocampus layer stratum radiatumipsiCA3rad-0.5
Field CA3 of hippocampus layer stratum oriensipsiCA3or-0.5
Lateral entorhinal cortexipsiLEnt2
Medial entorhinal cortexipsiMEnt2
Retrosplenial regionsipsiRS-0.5
Auditory regions layer 5ipsiAUL5-0.5
Medial prefrontal cortexipsimPFC0
Lateral septal nucleusipsiLS-0.5
Lateral septal nucleus dorsomedial quadrantipsiLSdmq-0.5
Rostral level of the dorsomedial quadrant of the lateral septal nucleusipsiLSrdmq-0.5
Lateral hypothalamic areacontraLH1
Lateral mammillary nucleus dorsal partcontraLMd0
Lateral mammillary nucleus ventral partcontraLMv0
Medial mammillary nucleus dorsal partcontraMMnd0
Medial mammillary nucleus ventral partcontraMMV0
Zona incertacontraZI1
Nucleus of the fields of ForelcontraF1
Subthalamic nucleus rostral partcontraSThr2

Input from

NameSideAbbr.WeightDetails
Mesopontine tegmental areaipsiTGAm2
Ventral tegmental area A10ipsiVTA1.5
Interfascicular nucleusipsiIF2
Caudal linear nucleus of the rapheipsiCLi0
Locus coeruleusipsiLC3
Locus coeruleus anterior partipsiLCa3
Nucleus incertus pars compactaipsiNIc1
Reticulotegmental nucleus of the pons medial partipsiRtTgm1
Raphe nucleiipsiRAN-0.5
Dorsal raphe nucleusipsiDR1
Dorsal raphe nucleus caudal partipsiDRC1
Dorsal raphe nucleus interfascicular partipsiDRI-0.5
Dorsal raphe nucleus midline portionipsiDRmip-0.5
Dorsal raphe nucleus ventromedial subdivisionipsiDRvme2
Median raphe nucleusipsiMnR3
Medial raphe nucleusipsiMeR-0.5
Median raphe nucleus peripheral partipsiMnRpe-0.5
Median raphe nucleus rostrocaudal extentipsiMnRrc2
Median raphe nucleus medial partipsiMnRm-0.5
Paramedian raphe nucleusipsiPMnR3
B6 subnucleusipsiB6-0.5
Basal forebrainipsiBAF2
Diagonal band of BrocaipsiDBB3
Nucleus of the diagonal band of Broca ventral partipsiVDBV2
Nucleus of the horizontal limb of the diagonal bandipsiHDB4
Lateral part of the nucleus of the horizontal limb of the diagonal bandipsiLPHDB0
Nucleus of the horizontal limb of the diagonal band caudal partipsiHDBc1
Nucleus of the horizontal limb of the diagonal band rostral partipsiRPHDB3
Nucleus of the horizontal limb of the diagonal band core partipsiHDBco-0.5
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Nucleus of the vertical limb of the diagonal band lateral partipsiVDBL1
Nucleus of the vertical limb of the diagonal band middle to caudal partipsiVDBmc-0.5
Nucleus of the vertical limb of the diagonal band rostral partipsiVDBR3
Septal-diagonal band of Broca complexipsiDBBs-0.5
Medial septal nucleusipsiMS3
Medial septal nucleus lateral partipsiMSLa-0.5
Medial septal nucleus medial partipsiMSm-0.5
Medial septal nucleus rostral partipsiMSR3
Middle to caudal parts of the medial septumipsiMSmc-0.5
Medial septal nucleus midline partipsiMSmi-0.5
Tuberomammillar systemipsiTMS1
Tuberomammillary nucleusipsiTuM3
Tuberomammillary nucleus dorsomedial partipsiTBMdm1
Ventral tuberomammillary nucleusipsiVTM2
HypothalamusipsiHYPO-0.5
Lateral hypothalamic areaipsiLH-0.5
Lateral hypothalamic area perifornical partipsiPFx-0.5
Lateral hypothalamic area fusiform neuronesipsiLHAfus-2
Posterior hypothalamic areaipsiPHA-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Suprachiasmatic nucleus caudal partipsiSChC-0.5
Supraoptic regionipsiSoR-0.5
Mammillary peduncleipsimp-0.5
Premammillary nucleusipsiPMAN1.5
Submammillothalamic nucleusipsiSMT1.5
Supramammillar nucleusipsiSuM3
Supramammillar nucleus lateral partipsiSuML3
Supramammillar nucleus lateral part anterior levelipsiSuMLA1
Supramammillar nucleus medial partipsiSuMM3
Perifornical nucleus fusiform neuronsipsiPeFus-2
ThalamusipsiT-0.5
Anterodorsal thalamic nucleusipsiAD3
Anteromedial thalamic nucleusipsiAM3
Anteroventral thalamic nucleusipsiAV3
Intralaminar nuclei of the dorsal thalamusipsiILM-0.5
Rhomboid thalamic nucleusipsiRh1
Mediodorsal thalamic nucleusipsiMD-0.5
Midline group of the dorsal thalamusipsiMTN1
Perireuniens nucleusipsiPRe2
Reuniens thalamic nucleusipsiRe2.5
Reuniens thalamic nucleus lateral partipsiReL3
Reuniens thalamic nucleus dorsomedial partipsiRedm3
Reuniens thalamic nucleus central partipsiReC3
Laterodorsal thalamic nucleusipsiLD-0.5
Ventral thalamusipsiVNT-0.5
Reticular thalamic nucleusipsiRt-0.5
Zona incertaipsiZI-0.5
Medial forebrain bundleipsimfb-2
Ventral amygdalofugal pathwayipsivap-2
Amygdaloid complexipsiAC-2
ClaustrumipsiCl-0.5
Bed nucleus of the anterior commissureipsiBAC0
HippocampusipsiHIPP-0.5
Dentate gyrusipsiDG2
Inner blade of the dentate gyrusipsiIBI3
Outer blade of the dentate gyrusipsiOBI3
Dentate gyrus molecular layeripsiDGmL1
Granule cell layer of the dentate gyrusipsiDGgL-0.5
Bascet cells of the granule cell layer of the dentate gyrusipsiGCbac3
Granule cells of the granule cell layer of the dentate gyrusipsiGCgc0
Hilus of the dentate gyrusipsiHil2
Deep hilar regionipsiHild3
Hilus of the dentate gyrus subgranular layeripsiHilsg3
Field CA1 of hippocampusipsiCA1-0.5
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr1
Field CA2 of hippocampusipsiCA2-0.5
Field CA3 of hippocampusipsiCA3-0.5
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr3
Field CA4 of hippocampusipsiCA4-0.5
SubiculumipsiS-0.5
Hippocampus rostral partipsiHIPPRo-0.5
Lacunosum molecular layer of the hippocampusipsiLNol1
Molecular layer of the dentate gyrusipsiMol2
Oriens layer of the hippocampusipsiOr1
Stratum radiatum of the hippocampusipsiRad1
Fimbria fornix regionipsififo-2
Fornixipsif-0.5
Lamina principalis externa of the presubiculumipsiPrSLpe3
Lamina principalis interna of the presubiculumipsiPrSLpi0
ParasubiculumipsiPaS3
Entorhinal cortexipsiEnt3
Dorsal entorhinal cortexipsiDEnt-0.5
Dorsal entorhinal cortex layer 3ipsiDEntL3-0.5
Dorsal entorhinal cortex layer 4ipsiDEntL4-0.5
Entorhinal cortex layer 3ipsiEntL31
Entorhinal cortex layer 2ipsiEntL2-0.5
Intermediate entorhinal cortexipsiIEnt-0.5
Dorsolateral entorhinal cortexipsiDLEnt3
Lateral entorhinal cortexipsiLEnt3
Lateral entorhinal cortex superficial layersipsiLEntsL-0.5
Lateral entorhinal cortex layer 2ipsiLEntL23
Medial entorhinal cortexipsiMEnt-0.5
Medial entorhinal cortex dorsal partipsiMEntD-0.5
Medial entorhinal cortex superficial layersipsiMEntLyS-0.5
Medial entorhinal cortex layer 2ipsiMEntLyL23
Medial entorhinal cortex layer 2 fast spiking cellsipsiMEntLyL2FS-0.5
Medial entorhinal cortex layer 2 grid cellsipsiMEntLyL2GC-0.5
Medial entorhinal cortex layer 2 border cellsipsiMEntLyL2BC-0.5
Medial entorhinal cortex layer 2 head direction cellsipsiMEntLyL2HDC-0.5
Medial entorhinal cortex layer 2 nonperiodic spatial cellsipsiMEntLyL2NPSC-0.5
Medial entorhinal cortex layer 2 nonspatial cellsipsiMEntLyL2NSC-0.5
Medial entorhinal cortex layer 3ipsiMEntLyL3-0.5
Medial entorhinal cortex layer 3 nonspatial cellsipsiMEntLyL3NSC-0.5
Medial entorhinal cortex layer 3 nonperiodic spatial cellsipsiMEntLyL3NPSC-0.5
Medial entorhinal cortex layer 3 head direction cellsipsiMEntLyL3HDC-0.5
Medial entorhinal cortex layer 3 border cellsipsiMEntLyL3BC-0.5
Medial entorhinal cortex layer 3 grid cellsipsiMEntLyL3GC-0.5
Medial entorhinal cortex layer 3 fast spiking cellsipsiMEntLyL3FS-0.5
Cingulate cortexipsiCg-0.5
Dorsal anterior cingulate cortexipsiDACC3
Cingulumipsicg-0.5
Prelimbic cortex dorsal partipsiPrLd3
Infralimbic cortexipsiIL2
NeocortexipsiNEOCX-0.5
Perirhinal cortexipsiA353
Ectorhinal cortexipsiA363
Orbitomedial prefrontal cortexipsiOMPFC2
Lateral orbitofrontal cortexipsiLOFC2
Ventral orbitofrontal cortexipsiVOFC2
Medial geniculate nucleusipsiMG1
Interpeduncular nucleus apical subnucleusipsiIPA0
Interpeduncular nucleus caudal subnucleusipsiIPC-0.5
Interpeduncular nucleus lateral subnucleusipsiIPL0
Ventral corners of the caudalmost lateral interpeduncular nucleusipsiVIPCML1
Septal regionipsiSER-0.5
Dorsal medial septumipsiDMS0
Dorsolateral septumipsiDLSER0
Lateral septal nucleusipsiLS1
Lateral septal nucleus dorsal partipsiLSD-0.5
Lateral septal nucleus lateral partipsiLSL-0.5
Ventrolateral septal regionipsiVLSER0
Mesopontine tegmental areacontraTGAm1
Ventral tegmental area A10contraVTA-0.5
Locus coeruleuscontraLC-0.5
Dorsal raphe nucleuscontraDR0.5
Median raphe nucleuscontraMnR3
Medial raphe nucleuscontraMeR-0.5
Diagonal band of BrocacontraDBB-0.5
Nucleus of the horizontal limb of the diagonal bandcontraHDB3
Nucleus of the horizontal limb of the diagonal band caudal partcontraHDBc-0.5
Nucleus of the horizontal limb of the diagonal band rostral partcontraRPHDB-0.5
Nucleus of the vertical limb of the diagonal bandcontraVDB3
Medial septal nucleuscontraMS3
Tuberomammillary nucleus dorsomedial partcontraTBMdm1
Ventral tuberomammillary nucleuscontraVTM1
Lateral hypothalamic areacontraLH-0.5
Submammillothalamic nucleuscontraSMT-0.5
Supramammillar nucleuscontraSuM1
Anterodorsal thalamic nucleuscontraAD2
Anteromedial thalamic nucleuscontraAM2
Anteroventral thalamic nucleuscontraAV2
Reuniens thalamic nucleuscontraRe-0.5
Reuniens thalamic nucleus dorsomedial partcontraRedm-0.5
HippocampuscontraHIPP1
CA1 pyramidal cells in the anterior hippocampal formationcontraAHCA1py-0.5
Dentate gyruscontraDG1
Granule cell layer of the dentate gyruscontraDGgL-0.5
Hilus of the dentate gyruscontraHil1
Hilus of the dentate gyrus granule cell layercontraHilg3
Hilus of the dentate gyrus fusiform cellscontraHilfus-0.5
Field CA1 of hippocampus layer stratum radiatumcontraCA1rad-0.5
Field CA1 of hippocampus layer stratum orienscontraCA1or-0.5
Field CA3 of hippocampuscontraCA3-0.5
Field CA3 of hippocampus layer stratum radiatumcontraCA3rad-0.5
Field CA3 of hippocampus layer stratum pyramidalecontraCA3pyr-0.5
Field CA3 of hippocampus layer stratum orienscontraCA3or-0.5
Molecular layer of the dentate gyruscontraMol1
Entorhinal cortexcontraEnt3
Lateral entorhinal cortexcontraLEnt3
Interpeduncular nucleus caudal subnucleuscontraIPC-0.5
Septal regioncontraSER-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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