University of Rostock

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Rat connectome



Field CA1 of hippocampus layer stratum radiatum right


Abbreviation
CA1rad
Color       
Superior regionsField CA1 of hippocampus layers deep layers

SynonymsAbbr.Language
Field CA1 of hippocampus layer stratum radiatumCA1rad 
Field CA1 of hippocampus layer stratum radiatumCA1L5sr 

SubregionsSide
Field CA1 of hippocampus layer stratum radiatum non-principal cellsright
Field CA1 of hippocampus layer stratum radiatum retrohippocampal neuronsright
Field CA1 of hippocampus layer stratum radiatum outer partright
Field CA1 of hippocampus layer inner stratum radiatumright
Field CA1 of hippocampus layer superficial half of the stratum radiatumright
Field CA1 of hippocampus layer deep portion of the stratum radiatumright
Field CA1 of hippocampus layer stratum radiatum giant cellright
Field CA1 of hippocampus layer stratum radiatum borderright

Output to

NameSideAbbr.WeightDetails
Medial septal nucleuscontraMS-0.5
Dorsal hippocampuscontraHIPPd-0.5
Lateral septal nucleuscontraLS-0.5
Magnocellular basal forebrain neuronal complexipsiMBFNC1
Medial septal nucleusipsiMS1
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Medial accumbensipsiAcbM-0.5
Dentate gyrus molecular layeripsiDGmL-0.5
Granule cell layer of the dentate gyrusipsiDGgL-0.5
Field CA1 of hippocampus dorsal layer stratum oriensipsiCA1dL2so0
Field CA1 of hippocampus dorsal layer stratum pyramidaleipsiCA1dL3sp0
Field CA1 of hippocampus layer stratum radiatum retrohippocampal neuronsipsiCA1L5srrhn-0.5
Field CA1 of hippocampus layer stratum oriensipsiCA1or-0.5
Subiculum dorsal partipsiSd-0.5
Molecular layer of the subiculumipsiSumo-0.5
Subiculum stratum pyramidaleipsiSupyr-0.5
Medial entorhinal cortexipsiMEnt-10
Retrosplenial dysgranular cortexipsiRSdys1
Retrosplenial granular cortexipsiRSGra1
Lateral prefrontal cortexipsilPFC0.5
Medial prefrontal cortexipsimPFC1
Ventral medial prefrontal cortexipsivmPFC0.5
Lateral septal nucleusipsiLS2

Input from

NameSideAbbr.WeightDetails
Medial septum dorsal band complexcontraMSDB1
HippocampuscontraHIPP1
Anterior one-third hippocampal formationcontraAHCfot3
Field CA1 of hippocampus septal polecontraCA1sp1
Field CA3 of hippocampuscontraCA33
Proximal part of field CA3b of hippocampuscontraCA3bp1
Field CA3c of hippocampuscontraCA3c3
Entorhinal cortexcontraEnt-0.5
Septal regioncontraSER-0.5
Locus coeruleusipsiLC-0.5
Raphe nucleiipsiRAN2
Median raphe nucleusipsiMnR3
Magnocellular basal forebrain neuronal complexipsiMBFNC1
Medial septum dorsal band complexipsiMSDB2
Diagonal band of BrocaipsiDBB1
Nucleus of the horizontal limb of the diagonal bandipsiHDB-0.5
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Medial septal nucleusipsiMS1
Medial septum dorsal band complex type 1 axon cellsipsiMSDBt1ac2
Substantia innominataipsiSI-0.5
Dorsomedial hypothalamic nucleusipsiDMHy1
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0.5
Basal nucleus parvicellular part caudomedial regionipsiBpccm2
Basal nucleus parvicellular part lateral portionipsiBpcL1
Posterior basomedial nucleusipsiBMP1
Ventromedial part of the lateral nucleusipsiLaVM3
Amygdalopiriform transition area medial partipsiAPirM1
Posterior amygdaloid nucleusipsiCOAp3
Periamygdaloid complex medial divisionipsiPACm1
Periamygdaloid complex sulcal divisionipsiPACs1
Amygdalohippocampal areaipsiAHi2.5
Dorsal hippocampusipsiHIPPd2
Polymorph layer of the dentate gyrusipsiDGpo-0.5
Hilus of the dentate gyrusipsiHil-0.5
Hilar mossy cellsipsiHilmc-0.5
Hilus of the dentate gyrus at temporal levelsipsiHiltL-0.5
Mossy cells in Amarals zone 4ipsiHilagrMc-0.5
Field CA1 of hippocampusipsiCA13
Field CA1 of hippocampus layer stratum radiatum non-principal cellsipsiCA1L5srnpc1
Field CA1 of hippocampus layer stratum radiatum retrohippocampal neuronsipsiCA1L5srrhn-0.5
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr-0.5
Field CA1 of hippocampus layer stratum pyramidal cellsipsiCA1L3spc0.5
Field CA1 of hippocampus layer stratum pyramidale double projections cellsipsiCA1L3spdpc-0.5
Field CA1 of hippocampus layer stratum oriensipsiCA1or-0.5
Field CA1 of hippocampus layer stratum oriens double projection cellsipsiCA1L2sodpc-0.5
Field CA1 of hippocampus layer stratum oriens retrohippocampal neuronsipsiCA1L2sorhn-0.5
Border CA1 lacunosum-moleculare with L5 stratum radiatumipsiCA1Lb-0.5
Field CA1 of hippocampus ventral layer stratum pyramidal cellsipsiCA1vL3spc1
CA1 domain 1 stratum oriensipsiCA1do1so-0.5
Field CA1 of hippocampus splenial one-thirdipsiCA1ot-0.5
Field CA1 of hippocampus septal poleipsiCA1sp1
Field CA2 of hippocampusipsiCA2-0.5
Field CA2 of hippocampus layer stratum pyramidale primary axon of pyramidal cellsipsiCA2L3spapy-0.5
Field CA2 of hippocampus layer stratum pyramidale secondary axon of pyramidal cellsipsiCA2L3sapy-0.5
Field CA3 of hippocampusipsiCA3-0.5
Field CA3 of hippocampus layer stratum radiatumipsiCA3rad-0.5
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr1
Field CA3 of hippocampus layer stratum pyramidale pyramidal neuronsipsiCA3L3spy4
Proximal field CA3 of hippocampusipsiPCA3-0.5
Proximal field CA3 of hippocampus at temporal levelsipsiPCA3tL-0.5
Field CA3c of hippocampusipsiCA3c3
Field CA3c of hippocampus pyramidal cellsipsiCA3cPC-0.5
Field CA3c of hippocampus ventral partipsiCA3cV-0.5
Field CA3a of hippocampus pyramidal cell layeripsiCA3aLpy-0.5
Field CA3a of hippocampus pyramidal cell layer primary axon of pyramidal cellsipsiCA3aLpapyc-0.5
Field CA3a of hippocampus pyramidal cell layer secondary axon of pyramidal cellsipsiCA3aLsapyc-0.5
Proximal part of field CA3b of hippocampusipsiCA3bp-0.5
Field CA3 of hippocampus mid septotemporal portionipsiCA3mst3
Field CA3 of hippocampus midtransverse portionipsiCA3mt-0.5
SubiculumipsiS-0.5
Entorhinal cortexipsiEnt-0.5
Intermediate entorhinal cortexipsiIEnt1
Lateral entorhinal cortexipsiLEnt1
Medial entorhinal cortexipsiMEnt1
Medial entorhinal cortex superficial layersipsiMEntLyS-0.5
Medial entorhinal cortex layer 2ipsiMEntLyL2-0.5
Medial entorhinal cortex layer 3ipsiMEntLyL3-0.5
Perirhinal cortexipsiA351
Septal regionipsiSER1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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