University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Median raphe nucleus right


Abbreviation
MnR
Color       
Superior regionsRaphe nuclei

SynonymsAbbr.Language
 MRN 
 NCS 
 B8 
Nucleus raphes medianus  
Nucleus centralis superioris  
Nucleus raphe medianis Eng
Superior central raphe nucleusCSEng
Median pontine raphe nucleus Eng
Median raphe nucleusNRmEng
Raphe nucleus medianus Eng
Median raphe nucleusMREng
Raphe medianus Eng
Median raphe nucleusMnREng
Median raphe  
Central superior raphe nucleus Eng

SubregionsSide
Central raphe nucleusright
Dorsalmost region of the median raphe nucleusright
Medial raphe nucleusright
Median raphe nucleus anterior partright
Median raphe nucleus caudal portionright
Median raphe nucleus dorsocaudal partright
Median raphe nucleus peripheral partright
Median raphe nucleus posterior partright
Median raphe nucleus right halfright
Ventral part of median raphe nucleusright
Rostral median raphe nucleusright
Serotoninergic population of the median raphe nucleusright
Nonserotoninergic population of the median raphe nucleusright
Midline of the median raphe nucleusright
Median raphe nucleus rostrocaudal extentright
Rostroventral part of the median raphe nucleusright
Median raphe nucleus medial partright
Median raphe nucleus mid partright
Interfascicular area of the median raphe nucleusright
Lateral median raphe nucleusright
Median raphe nucleus midrostrocaudal partright

Output to

NameSideAbbr.WeightDetails
Nuclei of the lateral lemniscuscontraNLL1
Ventrolateral periaqueductal graycontraVLPAG1
Central tegmental field dorsal partcontraTGACd0
Midbrain extrapyramidal areacontraMEA0.5
Ventral tegmental area A10contraVTA1.5
Ventral tegmental area A10 lateral partcontraVTAL3
Middle part of the retrorubral fieldcontraRRmi0
Laterodorsal tegmental nucleuscontraLDTg1
Dorsal tegmental nucleuscontraDTg1
Pedunculopontine tegmental nucleuscontraPPTg0
Locus coeruleuscontraLC-1
Nucleus incertus pars dissipatacontraNId2
Pontine tegmental fieldcontraPTF0
Parabrachial nucleuscontraPB1
Medullary reticular nucleuscontraMdD-0.5
Mesencephalic trigeminal nucleuscontraMe51
Mesencephalic trigeminal nucleus rostral ponscontraMe5rp2
Dorsal raphe nucleus lateral wingcontraDRlw1
Rostral ventral medulla oblongatacontraRVMeO3
Preoptic regioncontraPREO1
Medial preoptic nucleuscontraMPO0.5
Posterior region [Lateral division of the hypothalamus]contraPReg1
Lateral hypothalamic areacontraLH1
Ventromedial hypothalamic nucleuscontraVMH2
Ventromedial hypothalamic nucleus central partcontraVMHC1
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL1
Anteroventral periventricular nucleus 2contraAVPV20.5
A8 dopamine cells retrorubral groupcontraRRF0
A8 dopamine cells retrorubral group lateral partcontraRRFL0.5
A8 dopamine cells retrorubral group medial partcontraRRFm1
Central medial thalamic nucleuscontraCM1
Centrolateral thalamic nucleuscontraCL1
Paracentral thalamic nucleuscontraPC1
Medial group of the dorsal thalamuscontraMED1
Mediodorsal thalamic nucleuscontraMD1
Submedius thalamic nucleuscontraSub1
HabenulacontraHAB1
Lateral habenular nucleuscontraLHb0.5
Lateral habenular nucleus lateral partcontraLHbL0.5
Lateral habenular nucleus caudal subfieldcontraLHbcs0.5
Amygdaloid complexcontraAC1
Basolateral amygdaloid nucleuscontraBL1
Central amygdaloid nucleuscontraCe1
Accumbens nucleus shellcontraAcbSh-0.5
Caudate putamencontraCPu0
HippocampuscontraHIPP3
Dorsal hippocampuscontraHIPPd3
PresubiculumcontraPrS1
ParasubiculumcontraPaS1
Entorhinal cortexcontraEnt1
Lateral entorhinal cortexcontraLEnt-0.5
Medial entorhinal cortexcontraMEnt1
Anterior piriform cortexcontraAPIRC1
Posterior piriform cortexcontraPPIRC1
Cingulate cortexcontraCg2
Anterior cingulate cortexcontraACC1
Prelimbic cortexcontraPrL1
Infralimbic cortexcontraIL1
NeocortexcontraNEOCX1
Agranular insular cortexcontraAI-0.5
Medial prefrontal cortexcontramPFC0.5
Medial agranular prefrontal cortexcontraAGm1
Primary visual cortexcontraV11
Medial orbital cortexcontraMO0.5
Lateral geniculate complexcontraLG1
Ventral lateral geniculate nucleuscontraVLG-0.5
Olfactory bulb A16contraMOB1
Septal regioncontraSER2
Lateral septal nucleuscontraLS1
Fasciculus retroflexusipsifr-2
Nuclei of the lateral lemniscusipsiNLL1
Rostral interstitial nucleus of medial longitudinal fasciculusipsiRI1
Periaqueductal grayipsiPAG2
Dorsal periaqueductal grayipsiDPAG-0.5
Ventral periaqueductal grayipsiVPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG2
Periventricular gray matteripsiPVG-0.5
Medial pontine nucleusipsiMPoN-2
Red nucleusipsiR0
Prerubral fieldipsiPR2
Inferior colliculusipsiICOL-0.5
Superior colliculusipsiSC1
Tegmental areaipsiTGA2
Central tegmental field dorsal partipsiTGACd0
Midbrain extrapyramidal areaipsiMEA1
Rostromedial tegmental nucleusipsiRMTg1
Substantia nigra A9ipsiSN-0.5
Substantia nigra compact partipsiSNC1
Substantia nigra compact part dorsal tieripsiSNCD2
Substantia nigra reticular partipsiSNR-0.5
Ventral tegmental area A10ipsiVTA4
Ventral tegmental area A10 lateral partipsiVTAL3
Interfascicular nucleusipsiIF2
Ventral tegmental area A10 middle thirdipsiVTAmit-0.5
Parabrachial pigmented nucleus rostrolateral partipsiPBPRL2
Parabrachial pigmented nucleus caudal partipsiPBPC2
Paranigral nucleusipsiPN2
Caudal linear nucleus of the rapheipsiCLi2
Peripeduncular nucleusipsiPP1
Retrorubral nucleusipsiRR2
Middle part of the retrorubral fieldipsiRRmi0
Lateral tegmental field retroambigual areaipsiLTfr1
Laterodorsal tegmental nucleusipsiLDTg3
Ventral tegmental nucleusipsiVTg0
Dorsal tegmental nucleusipsiDTg1
Pedunculopontine tegmental nucleusipsiPPTg2
Pontine wave generation siteipsiPWGS-0.5
PonsipsiP0
Barringtons nucleusipsiBar3
Locus coeruleusipsiLC1
Locus coeruleus caudal partipsiLCca1
Locus coeruleus posterior partipsiLCp1
Locus coeruleus rostral partipsiLCRo0
Pericoerulear regionipsiPCR2
Prelocus coeruleus nucleusipsiPLC1
Nucleus incertusipsiNI3
Pons caudal partipsiPca1
Pons oral partipsiPor2
Pontine periventricular grayipsiPPG2
Pontine tegmental fieldipsiPTF0
Dorsomedial tegmental areaipsiDMTg-0.5
Reticulotegmental nucleus of the ponsipsiRtTg0
Prepositus nucleusipsiPr0
Reticular systemipsiRF0
Mesencephalic reticular formationipsiMRF2
Cuneiforme nucleusipsiCnF2
Parabrachial nucleusipsiPB1
Koelliker Fuse nucleusipsiKF1
Lateral parabrachial nucleusipsiLPB2
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi1
Gigantocellular reticular nucleus alpha partipsiGiA1
Gigantocellular reticular nucleus ventral partipsiGiV0
Lateral reticular nucleusipsiLRt0
Medullary reticular nucleusipsiMdD-0.5
Medial subnucleus reticularis ventralisipsiMSRV0
Medullary reticular nucleus dorsal partipsiMdDd0
Parvicellular reticular nucleusipsiPCRt1.5
Nucleus of the trapezoid bodyipsiTz0
Ambiguus nucleusipsiAmb0
Boetzinger complexipsiBo1
Abducens nucleusipsi60
Facial nucleusipsi70
Hypoglossal nucleusipsi12S0
Mesencephalic trigeminal nucleusipsiMe51
Mesencephalic trigeminal nucleus medial partipsiperiMe50.5
Mesencephalic trigeminal nucleus rostral ponsipsiMe5rp2
Pontine part of the mesencephalic trigeminal nucleusipsiMe5P-0.5
Motor trigeminal nucleusipsiMo50.5
Principal sensory trigeminal nucleusipsiPr50
Spinal trigeminal nucleusipsiSp5nc2.5
Dorsal cochlear nucleusipsiDC0
Ventral cochlear nucleusipsiVC0
Superior vestibular nucleusipsiSuVe0
Medial vestibular nucleusipsiMVe0.5
Lateral vestibular nucleusipsiLVe0
Inferior vestibular nucleusipsiIVN0
Nucleus of the solitary tractipsiSol1
Nucleus of the solitary tract lateral partipsiSolL1
Dorsal motor nucleus of vagusipsi103
Dorsal motor nucleus of vagus caudal partipsi10C1
Dorsal motor nucleus of vagus lateral partipsi10L1
Dorsal motor nucleus of vagus medial partipsi10M1
Dorsal motor nucleus of vagus rostral partipsi10R1
Dorsal raphe nucleusipsiDR1
Dorsal raphe nucleus dorsal partipsiDRD1
Dorsal raphe nucleus lateral wingipsiDRlw2
Dorsal raphe nucleus median partipsiDRM1
Dorsal raphe nucleus rostral partipsiDRr0.5
Dorsal raphe nucleus ventral partipsiDRV0
Pontine raphe nucleusipsiPnR3
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb0
Raphe pallidus nucleusipsiRPa0
Caudal ventrolateral medullaipsiCVLM1
Rostral ventrolateral medullaipsiRVLM-0.5
Mediaolateral part of the rostral ventrolateral medullaipsiMLRVLM-0.5
Cuneate nucleusipsiCu0
Inferior oliveipsiIO0
Superior oliveipsiSuOLi0
Paragigantocellular reticular nucleusipsiPGi0
ProsencephalonipsiPRC-0.5
Dorsal fornixipsidf-0.5
Median eminenceipsiME1.5
Endopiriform systemipsiEnN1
Islands of CallejaipsiICj-0.5
Diagonal band of BrocaipsiDBB3
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Medial septal nucleusipsiMS4
Medial septal nucleus lateral partipsiMSLa3
Medial septal nucleus midsagittal partipsiMSms-0.5
Basal nucleus MeynertipsiB1.5
Substantia innominataipsiSI1.5
Preoptic regionipsiPREO2
Lateral preoptic areaipsiLPO2
Medial preoptic areaipsiMPA1
Magnocellular preoptic nucleusipsiMCPO1.5
Medial preoptic nucleusipsiMPO3
Medial preoptic nucleus lateral partipsiMPOL3
Median preoptic nucleusipsiMnPO0
Ventrolateral preoptic nucleusipsiVLPO1
Ventromedial preoptic nucleusipsiVMPO-0.5
Tuberomammillary nucleusipsiTuM2
Tuberomammillary nucleus dorsomedial partipsiTBMdm-0.5
Ventral tuberomammillary nucleusipsiVTM-0.5
Glia limitans ventral to the ventral tuberomammillary nucleusipsiTuMgL-0.5
Subcommissural organipsiSCO-0.5
Dorsomedial hypothalamic nucleusipsiDMHy1
Posterior region [Lateral division of the hypothalamus]ipsiPReg1
Lateral zoneipsiLHA2
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area anterior partipsiLHAa1
Lateral hypothalamic area medial partipsiLHAm1
Lateral hypothalamic area perifornical partipsiPFx1.5
Lateral hypothalamic area posterior partipsiLHAp1
Tuberal region of lateral hypothalamusipsiTuLH1
Tuberal nucleusipsiTU-1
Lateral hypothalamus adjacent to the ventral tuberomammillary nucleusipsiLHVTM-0.5
Mediobasal hypothalamusipsiMeHypo-0.5
Medial division of the hypothalamusipsiMdH0
Medial zoneipsiMHA0
Anterior hypothalamic areaipsiAHA1
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe0
Anterior hypothalamic nucleusipsiAHn1.5
Dorsal hypothalamic areaipsiDA1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus diffuse partipsiDMH2
Dorsomedial nucleus posterior partipsiDMHp1
Posterior hypothalamic areaipsiPHA3
Midlateral posterior hypothalamic areaipsiPHAmL-0.5
Posterior hypothalamic nucleusipsiPH2
Subparaventricular zoneipsiSuPZ-0.5
Subparaventricular zone ventral partipsiSuPZv1
Tuberal areaipsiTA2
Ventromedial hypothalamic nucleusipsiVMH2
Ventromedial hypothalamic nucleus central partipsiVMHC1
Ventromedial hypothalamic nucleus shellipsiVMS0
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1
Periventricular zoneipsiPVZ-0.5
Anteroventral periventricular nucleus 2ipsiAVPV20.5
Arcuate nucleusipsiArc3
Arcuate nucleus caudal halfipsiArcch1
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP0.5
Paraventricular hypothalamic nucleusipsiPa3
Paraventricular nucleus lateral parvocellular partipsiPaLp0.5
Paraventricular nucleus medial partipsiPame-0.5
Arround paraventricular hypothalamic nucleusipsiPaB1
Paraventricular hypothalamic nucleus surrounding regionipsiPaSurr0.5
Periventricular hypothalamic nucleusipsiPe2
Suprachiasmatic nucleusipsiSCh3
Suprachiasmatic nucleus ventral divisionipsiSChv3
Suprachiasmatic nucleus medial posterior partipsiSChmp-0.5
Supraoptic regionipsiSoR0
Supraoptic nucleus [Supraoptic region]ipsiSO2
Nucleus properipsiSOnP-0.5
Medial hypothalamic groupipsiMHYPOg1
Mammillary bodyipsiCMAM3
Lateral mammillary nucleusipsiLM0.5
Mammillothalamic tractipsimt-2
Medial mammillary nucleusipsiMMn2
Medial mammillary nucleus lateral partipsiML2
Medial mammillary nucleus medial partipsiMM2
Posterior mammillay nucleusipsiPMAM2
Premammillary nucleusipsiPMAN1.5
Premammillary nucleus dorsal partipsiPMD1
Premammillary nucleus ventral partipsiPMV0
Premammillary nucleus ventromedial partipsiPMvm-0.5
Supramammillar nucleusipsiSuM3
Supramammillar nucleus lateral partipsiSuML-0.5
Supramammillar nucleus medial partipsiSuMM1
A8 dopamine cells retrorubral groupipsiRRF0
A8 dopamine cells retrorubral group lateral partipsiRRFL1
A8 dopamine cells retrorubral group medial partipsiRRFm2
Perifornical nucleusipsiPeF2
Retrochiasmatic areaipsiRCh2
Anterodorsal thalamic nucleusipsiAD1
Anterodorsal thalamic nucleus dorsal partipsiADd1
Anteromedial thalamic nucleusipsiAM1
Anteroventral thalamic nucleusipsiAV1.5
Anteroventral thalamic nucleus medial partipsiAVm1
Dorsal part of posterior subdivision of anteroventral thalamic nucleusipsiAVPD1
Interoanteromedial thalamic nucleusipsiIAM-0.5
Central medial thalamic nucleusipsiCM2
Centre median nucleusipsiCeMe0
Centrolateral thalamic nucleusipsiCL3
Paracentral thalamic nucleusipsiPC3
Paracentral thalamic nucleus caudal partipsiPC-c1
Paracentral thalamic nucleus rostral partipsiPC-r1
Parafascicular thalamic nucleusipsiPF2
Parafascicular thalamic nucleus lateral partipsiPFL2
Parafascicular thalamic nucleus medial partipsiPFM2
Rhomboid thalamic nucleusipsiRh1.5
Posterior thalamic nuclear groupipsiPo1
Posterior thalamic nuclear group medial partipsiPoMe1
Medial group of the dorsal thalamusipsiMED1
Mediodorsal thalamic nucleusipsiMD3
Intermediodorsal thalamic nucleusipsiIMD1
Mediodorsal thalamic nucleus lateral partipsiMDL1.5
Mediodorsal thalamic nucleus medial partipsiMDM1
Submedius thalamic nucleusipsiSub2
Midline group of the dorsal thalamusipsiMTN2
Paratenial thalamic nucleusipsiPT2
Paraventricular thalamic nucleusipsiPV1.5
Paraventricular thalamic nucleus anterior partipsiPVA4
Paraventricular thalamic nucleus medial partipsiPVM2
Paraventricular thalamic nucleus middle divisionipsiPVMiD0
Paraventricular thalamic nucleus posterior partipsiPVP3
Reuniens thalamic nucleusipsiRe3
Reuniens thalamic nucleus caudomedial divisionipsiRecm1
Reunienes thalamic nucleus rostromedial divisionipsiRerm2
Reuniens thalamic nucleus rostrolateral divisionipsiRerl1
Subfascicular nucleusipsiSFN-0.5
Subfornical organipsiSFO3
Ventrolateral thalamic nucleusipsiVL1.5
Ventral posterior thalamic complexipsiVPT0
Ventral posterior thalamic nucleus parvicellular partipsiVPPC0
Ventrobasal complexipsiVB1.5
Ventral posterolateral thalamic nucleusipsiVPL1
Ventral posteromedial thalamic nucleusipsiVPM1
Ventromedial thalamic nucleusipsiVM1.5
Ventromedial thalamic nucleus caudal partipsiVMc0
Intralaminar nucleiipsiILN2
Lateral thalamic nuclear groupipsiLTNG1
Lateral posterior thalamic nucleusipsiLP1
Laterodorsal thalamic nucleusipsiLD1
Ventrolateral part of the lateral thalamic nuclear groupipsiVLLTNG1
Ventroposterior lateral thalamic nucleusipsiVPLTNG1
Anterior medial thalamic nucleusipsiAMTZ-0.5
Oval paracentral thalamic nucleusipsiOPC1
Posteromedial thalamic nucleusipsiPMTN1
Ventral thalamusipsiVNT1
Reticular thalamic nucleusipsiRt1
Reticular thalamic nucleus dorsal partipsiRtD0.5
Reticular thalamic nucleus ventral partipsiRtV0.5
Subparafascicular thalamic nucleusipsiSPF0
Ventral thalamus dorsomedial partipsiVNTdm2
Zona incertaipsiZI3
Nucleus of the fields of ForelipsiF2
Forel field H1ipsiFFH11
Forel field H2ipsiFFH21
HabenulaipsiHAB2
Lateral habenular nucleusipsiLHb3
Lateral habenular nucleus lateral partipsiLHbL1
Lateral habenular nucleus medial partipsiLHbM3
Lateral habenular nucleus caudal subfieldipsiLHbcs1
Medial habenular nucleusipsiMHb0.5
Pretectal regionipsiPRT1
Anterior pretectal nucleusipsiAPT0
Posterior pretectal nucleusipsiPPT0
Lateral portion of the internal capsuleipsiLic2
Cingulate bundleipsicgb-2
Corpus callosumipsicc-2
Medial forebrain bundleipsimfb-2
Stria medullaris of the thalamusipsism-2
Medial corticothalamic tractipsimctt-2
Striatal hypothalamic tractipsisht-2
Olfactohypothalamic tractipsioht-2
Fasciculus periventricularis hypothalamicusipsifpvh-2
Tractus olfactohabenularis lateralisipsitohal-0.5
Tuberculohypothalamic tractipsithyt-2
Raphe medial tractipsirmt-2
Amygdaloid complexipsiAC2
Basal dorsal nucleus medial partipsiBDM1
Basolateral amygdaloid nucleusipsiBL2
Basolateral amygdaloid nucleus ventral partipsiBLve0.5
Posterior basolateral nucleusipsiBLP0.5
Basomedial amygdaloid nucleusipsiBM-0.5
Anterior basomedial nucleusipsiBMA0.5
Posterior basomedial nucleusipsiBMP0.5
Lateral amygdaloid nucleusipsiLA0
Bed nucleus of the stria terminalisipsiBST1
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv-0.5
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf-0.5
Bed nucleus of the stria terminalis lateral divisionipsiBSTL-0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM-0.5
Bed nucleus of the stria terminalis medial division posterior partipsiBSTMP-0.5
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd-0.5
Central amygdaloid nucleusipsiCe2
Central division of sublenticular extended amygdalaipsiSLEAc-0.5
Medial division of the sublenticular extended amygdalaipsiSLEAm-0.5
Olfactory amygdalaipsiOA-0.5
Amygdalopiriform transition areaipsiAPir1
Anterior amygdaloid areaipsiAA0
Cortical amygdaloid nucleusipsiCAn0
Corticomedial amygdaloid nucleusipsiCMAn-0.5
Dorsal area of posterior part of cortical amygdaloid nucleusipsiCAnDP1
Medial amygdaloid nucleusipsiMe1
Medial amygdaloid nucleus dorsal tipipsiMeDT1
Posteromedial cortical nucleusipsiPMCo-0.5
ClaustrumipsiCl2
Globus pallidusipsiGP0
Medial globus pallidusipsiMGP2
Ventral pallidumipsiVP2
Accumbens nucleusipsiAc2
Accumbens nucleus coreipsiAcbC-0.5
Accumbens nucleus shellipsiAcbSh-0.5
Dorsomedial shellipsiAcbShdm-10
Lateral accumbens shellipsiAcbShl0.5
Medial accumbens shellipsiAcbShm2
Lateral nucleus accumbensipsiAcl0.5
Caudate putamenipsiCPu2
Caudal striatumipsiCPuc2
Ventral striatumipsiCPuv-0.5
Subthalamic nucleusipsiSTh1.5
HippocampusipsiHIPP3
Anterior hippocampal formationipsiAHCf-0.5
Dorsal hippocampusipsiHIPPd3
Hippocampal formationipsiHIPPP-0.5
Dentate gyrusipsiDG3
Dorsal hippocampus dentate gyrusipsiDDG3
Subgranular layer of the dentate gyrusipsiDGsg-0.5
Ventral hippocampus dentate gyrusipsiVDG3
Dentate gyrus molecular layeripsiDGmL3
Granule cell layer of the dentate gyrusipsiDGgL3
Hilus of the dentate gyrusipsiHil3
Hilus of the dentate gyrus subgranular layeripsiHilsg4
Adjacent to granule cell layer of the hilus of the dentate gyrusipsiHilagr3
Suprapyramidal blade of the hilusipsiSuPyHil3
Dentate gyrus below granule cell layeripsiDGbgc-0.5
Suprapyramidal blade of the dentate gyrusipsiDGspyB3
Ammon hornipsiAmH3
Field CA1 of hippocampusipsiCA13
Field CA1 of hippocampus dorsalipsiCA1d-0.5
Field CA1 of hippocampus layer stratum lacunosum moleculare radiatumipsiCA1lm-0.5
Field CA1 of hippocampus stratum lacunosum-moleculareipsiCA1LM3
Field CA1 of hippocampus layer stratum lacunosumipsiCA1L6sla2
Field CA1 of hippocampus layer stratum moleculareipsiCA1L7sm1
Field CA1 of hippocampus layer stratum radiatumipsiCA1rad3
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr2
Field CA1 of hippocampus layer stratum oriensipsiCA1or3
Field CA2 of hippocampus stratum lacunosum-moleculareipsiCA2LM3
Field CA2 of hippocampus layer stratum radiatumipsiCA2rad1
Field CA2 of hippocampus layer stratum pyramidaleipsiCA2pyr1
Field CA2 of hippocampus layer stratum oriensipsiCA2or1
Field CA3 of hippocampusipsiCA34
Field CA3 of hippocampus stratum lacunosum-moleculareipsiCA3lm3
Field CA3 of hippocampus layer stratum radiatumipsiCA3rad4
Field CA3 of hippocampus layer stratum lucidumipsiCA3sl1
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr1
Field CA3 of hippocampus layer stratum oriensipsiCA3or4
SubiculumipsiS2
Posterior hippocampusipsiHIPPpo-0.5
Septohippocampal nucleusipsiSHi3
Ventral hippocampusipsiHIPPv3
Lacunosum molecular layer of the hippocampusipsiLNol3
Stratum radiatum of the hippocampusipsiRad0.5
Top of stratum radiatum of the hippocampusipsiTRad3
Fasciola cinereumipsiFC-0.5
Fornixipsif-2
Indusium griseumipsiIG-0.5
PresubiculumipsiPrS-0.5
ParasubiculumipsiPaS-0.5
Entorhinal cortexipsiEnt2
Lateral entorhinal cortexipsiLEnt-0.5
Lateral entorhinal cortex ventral partipsiVLEA2
Lateral entorhinal cortex ventromedial partipsiVMEAL2
Medial entorhinal cortexipsiMEnt3
Piriform cortexipsiPir1
Anterior piriform cortexipsiAPIRC1
Posterior piriform cortexipsiPPIRC1
Retrosplenial regionsipsiRS0
Retrosplenial agranular cortexipsiRSA-0.5
Cingulate cortexipsiCg3
Anterior cingulate cortexipsiACC1
Cingulate cortex area 1ipsiCg12
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2 caudal partipsiCg2c1
Prelimbic cortexipsiPrL2
Infralimbic cortexipsiIL1
NeocortexipsiNEOCX1
Frontal association cortexipsiFrA2
Frontal cortex area 2ipsiFr2-0.5
Parietal association cortexipsiPtA3
Lateral parietal association cortexipsiLPtA2
Temporal cortexipsiTE2
Insular cortexipsiICX0
Perirhinal cortexipsiA350
Somatomotoric regionsipsiSMR3
Motoric regionsipsiM1
Lateral agranular prefrontal cortexipsiAGl1
Forelimb motor cortexipsiFMCx1
Hindlimb motor cortexipsiHMCx1
Medial prefrontal cortexipsimPFC3
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS1-0.5
Visual regionsipsiVR3
Primary visual cortexipsiV13
Orbitofrontal cortexipsiOrFCx-0.5
Lateral orbital cortexipsiLO0
Medial orbital cortexipsiMO2
Ventrolateral orbital areaipsiVLO3
Nucleus of the posterior commissureipsiPCom1
Dorsal geniculate nucleus lateral partipsiDLGl1
Lateral geniculate complexipsiLG2
Intergeniculate leafipsiIGL1
Ventral lateral geniculate nucleusipsiVLG1
Medial geniculate nucleusipsiMG1
Interpeduncular nucleusipsiIP4
Interpeduncular nucleus apical subnucleusipsiIPA2.5
Interpeduncular nucleus caudal subnucleusipsiIPC2.5
Interpeduncular nucleus central subnucleusipsiIPRc3
Interpeduncular nucleus dorsal subnucleusipsiIPRd2.5
Interpeduncular nucleus intermediate subnucleusipsiIPI3
Interpeduncular nucleus lateral subnucleusipsiIPL2.5
Interpeduncular nucleus rostral subnucleusipsiIPR3
Caudal two third part of the rostral interpeduncular nucleusipsiIPRCtt3
Interpeduncular nucleus rostral subnucleus central partipsiIPRce3
Interpeduncular nucleus rostral subnucleus rostral partipsiIPRr0
Interpeduncular nucleus dorsomedial partipsiIPdm0
Olfactory bulb A16ipsiMOB-0.5
Anterior olfactory cortex layer 1ipsiOCOAL1-2
Glomerular layer of the olfactory bulbipsiOBglo3
Granular cell layer of the olfactory bulbipsiOBgra1
Main olfactory bulb infraglomerular layersipsiOcxLig1
Anterior olfactory nucleusipsiAON1.5
Olfactory tubercleipsiTuO2
Septal regionipsiSER3
Dorsal medial septumipsiDMS-1
Lateral septal nucleusipsiLS2
Lateral septal nucleus dorsal partipsiLSD3
Lateral septal nucleus intermediate partipsiLSI3
Lateral septal nucleus ventral partipsiLSV3
Septofimbrial nucleusipsiSFi-0.5
Triangular septal nucleusipsiTS-0.5
Ventral medial septumipsiVMSe-1
Intermediolateral septal areaipsiSERimL2
Fimbrial nucleus of septumipsiSeptF-0.5
Stria terminalisipsist-2
3d ventricleipsi3V1
4th ventricleipsi4V0.5
Ependyma and subependymal layeripsiE0
Lateral ventricle ependymal wallipsiLVew1
Detrusor muscle of the urinary bladderipsiOrgUrBLaDe-10

Input from

NameSideAbbr.WeightDetails
Central grey caudal areacontracCG2
Central grey rostral areacontrarCG2
Central gray pons partcontraCGP3
Oculomotor nucleuscontra30
Substantia nigra compact partcontraSNC0
Substantia nigra lateral partcontraSNL0
Substantia nigra reticular partcontraSNR0
Ventral tegmental area A10contraVTA4
Interfascicular nucleuscontraIF2
Caudal linear nucleus of the raphecontraCLi2
Laterodorsal tegmental nucleuscontraLDTg3
Dorsal tegmental nucleuscontraDTg2
Dorsal tegmental nucleus lateral partcontraDLTN1
Pedunculopontine tegmental nucleuscontraPPTg1
Interposed cerebellar nucleicontraICN2
Lateral cerebellar nucleuscontraCERL2
Locus coeruleuscontraLC2
Nucleus incertus pars dissipatacontraNId2
Pontine sublaterodorsal nucleuscontraPsLdn1
Prepositus nucleuscontraPr0
Pontine reticular nucleus oral partcontraPnO1
Cuneiforme nucleuscontraCnF0
Koelliker Fuse nucleuscontraKF1
Parabrachial nucleus dorsal partcontraPBD1
Parabrachial nucleus ventral partcontraPBV2
Supragenual nucleuscontraSGe0.5
Mesencephalic trigeminal nucleuscontraMe50
Trochlear nucleuscontra40
Nucleus of the solitary tractcontraSol1
Dorsal raphe nucleuscontraDR4
Rostral linear nucleus of the raphecontraRLi1
Pontine raphe nucleuscontraPnR2
Raphe magnus nucleuscontraRMg1
Raphe obscurus nucleuscontraROb2
Nucleus of the diagonal band of Broca dorsal partcontraVDBD0
Nucleus of the diagonal band of Broca ventral partcontraVDBV0
Nucleus of the horizontal limb of the diagonal bandcontraHDB1
Intermediate hypothalamic cell groupscontraIHCG-0.5
HypothalamuscontraHYPO4
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Perifornical hypothalamic area [Preoptic anterior region]contraPFxPAR-0.5
Lateral zonecontraLHA-0.5
Lateral hypothalamic areacontraLH1
Lateral hypothalamic area dorsal partcontraLHd0
Lateral hypothalamic area ventral partcontraLHAvp-0.5
Anterior hypothalamic areacontraAHA-0.5
Dorsal hypothalamic areacontraDA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Ventromedial hypothalamic nucleus central partcontraVMHC3
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL3
Periventricular zonecontraPVZ-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
A8 dopamine cells retrorubral groupcontraRRF1
Perifornical nucleuscontraPeF-0.5
Medial part of the caudal perifornical areacontraPeFCM-0.5
Lateral part of the caudal perifornical areacontraPeFCL-0.5
ThalamuscontraT0
Medial group of the dorsal thalamuscontraMED0
Mediodorsal thalamic nucleuscontraMD0
Lateral habenular nucleuscontraLHb4
Medial habenular nucleuscontraMHb2
Bed nucleus of the stria terminaliscontraBST1
Bed nucleus of the stria terminalis lateral divisioncontraBSTL1
Bed nucleus of the stria terminalis medial divisioncontraBSTM0
Bed nucleus of the stria terminalis preoptic partcontraBSTPO1
Anterior amygdaloid areacontraAA0
Anterior cortical amygdaloid nucleuscontraACo0
Medial amygdaloid nucleuscontraMe0
Dentate gyruscontraDG0
Field CA1 of hippocampus ventral partcontraCA1v0
Cingulate cortex area 1contraCg12
Prelimbic cortexcontraPrL2
Infralimbic cortexcontraIL2
Frontal cortex area 2contraFr22
Agranular insular cortex posterior partcontraAIP0
Agranular insular cortex ventral partcontraAIV0
Dorsal peduncular cortexcontraDP3
Mid-dorsal peduncular cortexcontraMiDP1
Magnocellular nucleus of the posterior commissurecontraMCPC0
Interpeduncular nucleuscontraIP3
Interpeduncular nucleus dorsolateral partcontraIPRdL3
Interpeduncular nucleus dorsomedial partcontraIPdm3
Lateral septal nucleus dorsal partcontraLSD0
Lateral septal nucleus intermediate partcontraLSI0
Lateral septal nucleus ventral partcontraLSV0
Septofimbrial nucleuscontraSFi0
Triangular septal nucleuscontraTS0
Septohypothalamic nucleuscontraSHy0
Central grayipsiCG3
Central grey caudal areaipsicCG3
Central grey rostral areaipsirCG2
Central gray pons partipsiCGP4
Oculomotor nucleusipsi33
Rostral interstitial nucleus of medial longitudinal fasciculusipsiRI0
Periaqueductal grayipsiPAG-0.5
Dorsolateral periaqueductal grayipsiDLPAG-0.5
Lateral periaqueductal grayipsiLPAG-0.5
Ventral periaqueductal grayipsiVPAG-0.5
Periventricular gray matteripsiPVG2
Superior colliculusipsiSC1
Ventral midbrain tegmentumipsiVeMT1
Substantia nigra A9ipsiSN3
Substantia nigra compact partipsiSNC0
Substantia nigra lateral partipsiSNL1
Substantia nigra reticular partipsiSNR2
Ventral tegmental area A10ipsiVTA4
Interfascicular nucleusipsiIF2
Ventral tegmental tailipsiVTTa1
Caudal linear nucleus of the rapheipsiCLi2
Transitional region between ventral tegmental area and the medial substantia nigra pars compactaipsiTRVTAmSNC1
Ventrolateral tegmental areaipsiVLTg1
Laterodorsal tegmental nucleusipsiLDTg4
Ventral tegmental nucleusipsiVTg3
Dorsal tegmental nucleusipsiDTg3
Dorsal tegmental nucleus lateral partipsiDLTN2
Pedunculopontine tegmental nucleusipsiPPTg2
Interstitial nucleus of CajalipsiInC-2
Cerebellar cortexipsiCERC0
Interposed cerebellar nucleiipsiICN3
Lateral cerebellar nucleusipsiCERL3
Barringtons nucleusipsiBar2
Locus coeruleusipsiLC2
Nucleus incertus pars compactaipsiNIc3
Nucleus incertus pars dissipataipsiNId3
Pontine periventricular grayipsiPPG3
Pontine sublaterodorsal nucleusipsiPsLdn1
Pontine tegmental fieldipsiPTF2
Prepositus nucleusipsiPr2
Reticular systemipsiRF0.5
Magnocellular reticular nucleusipsiNRMC1
Deep mesencephalic nucleusipsiDpMe1
Pontine reticular nucleusipsiPRN1
Pontine reticular nucleus oral partipsiPnO2
Pontine reticular nucleus caudal partipsiPNC2
Cuneiforme nucleusipsiCnF1
Parabrachial nucleusipsiPB1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus dorsal partipsiPBD2
Parabrachial nucleus medialipsiPBnMe2
Parabrachial nucleus ventral partipsiPBV3
Bulbar reticular formationipsiBRF-0.5
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Subcoeruleus nucleus dorsal partipsiSubCD2
Mesencephalic trigeminal nucleusipsiMe52
Trochlear nucleusipsi43
Medial vestibular nucleusipsiMVe-0.5
Nucleus of the solitary tractipsiSol2
Dorsal raphe nucleusipsiDR4
Dorsal raphe nucleus caudal partipsiDRC3
Dorsal raphe nucleus rostral partipsiDRr-0.5
Rostral linear nucleus of the rapheipsiRLi1
Pontine raphe nucleusipsiPnR2
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb2
Raphe pallidus nucleusipsiRPa2
B9 serotonin cellsipsiB93
Diagonal band of BrocaipsiDBB2
Nucleus of the diagonal band of Broca dorsal partipsiVDBD1
Nucleus of the diagonal band of Broca ventral partipsiVDBV2
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Medial septal nucleusipsiMS3
Medial septal nucleus medial partipsiMSm1
Basal nucleus MeynertipsiB0.5
Preoptic regionipsiPREO1
Intermediate hypothalamic cell groupsipsiIHCG2
Lateral preoptic areaipsiLPO3
Medial preoptic areaipsiMPA3
Lateral preoptic nucleusipsiLPN0.5
Magnocellular preoptic nucleusipsiMCPO1
Medial preoptic nucleusipsiMPO1
Median preoptic nucleusipsiMnPO1.5
Ventrolateral preoptic nucleusipsiVLPO2
Extended ventrolateral preoptic nucleusipsieVLPO3
Medial extended ventrolateral preoptic nucleusipsimeVLPO3
Ventrolateral preoptic nucleus clusteripsiVLPOc3
Dorsolateral preoptic regionipsiPREOdL2
Tuberomammillary nucleusipsiTuM3
Ventral basal forebrainipsiVBAF2
HypothalamusipsiHYPO4
Dorsomedial hypothalamic nucleusipsiDMHy1
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR3
Lateral zoneipsiLHA3
Lateral hypothalamic areaipsiLH4
Lateral hypothalamic area dorsal partipsiLHd0
Lateral hypothalamic area perifornical partipsiPFx4
Lateral hypothalamic area ventral partipsiLHAvp0.5
Tuberal division of the lateral hypothalamic areaipsiLHTC-0.5
Medial division of the hypothalamusipsiMdH-0.5
Anterior hypothalamic areaipsiAHA2
Anterior hypothalamic nucleusipsiAHn0
Dorsal hypothalamic areaipsiDA3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM4
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM4
Medial mammillary nucleus 2ipsiMM21.5
Posterior hypothalamic areaipsiPHA4
Caudal magnocellular nucleusipsiCMC1
Midlateral posterior hypothalamic areaipsiPHAmL-0.5
Posterior hypothalamic nucleusipsiPH1
Ventromedial hypothalamic nucleusipsiVMH1.5
Ventromedial hypothalamic nucleus central partipsiVMHC3
Ventromedial hypothalamic nucleus shellipsiVMS0
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL3
Periventricular zoneipsiPVZ0.5
Arcuate nucleusipsiArc1.5
Paraventricular hypothalamic nucleusipsiPa2
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag1
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo2
Periventricular hypothalamic nucleusipsiPe2
Supraoptic nucleus [Supraoptic region]ipsiSO2
Incerto hypothalamic areaipsiicHYPO1
Lateral mammillary nucleusipsiLM2
Principal part of the mammillothalamic tract in the supramammillary regionipsipmt3
Medial mammillary nucleusipsiMMn2
Premammillary nucleus dorsal partipsiPMD1
Premammillary nucleus ventral partipsiPMV3
Submammillothalamic nucleusipsiSMT3
Supramammillar nucleusipsiSuM3
Supramammillar nucleus lateral partipsiSuML2
Supramammillar nucleus lateral part lateral subpartipsiSuMLL1
Supramammillar nucleus lateral part medial subpartipsiSuMLM0
Supramammillar nucleus medial partipsiSuMM1
Midline of the supramammillary regionipsiSuMmi1
A8 dopamine cells retrorubral groupipsiRRF2
Perifornical nucleusipsiPeF3
Medial part of the caudal perifornical areaipsiPeFCM1
Lateral part of the caudal perifornical areaipsiPeFCL1
Retrochiasmatic areaipsiRCh1
ThalamusipsiT0
Centrolateral thalamic nucleusipsiCL3
Medial group of the dorsal thalamusipsiMED1
Mediodorsal thalamic nucleusipsiMD1
Subfascicular nucleusipsiSFN0
Subfornical organipsiSFO3
Reticular thalamic nucleusipsiRt2
Zona incertaipsiZI2
Forel field H1ipsiFFH10
Forel field H2ipsiFFH20
Tuber cinereum areaipsiTC1
HabenulaipsiHAB2
Lateral habenular nucleusipsiLHb4
Lateral habenular nucleus central partipsiLHbc2
Lateral habenular nucleus lateral partipsiLHbL1.5
Lateral habenular nucleus lateral part magnocellular subnucleusipsiLHbLMc3
Lateral habenular nucleus medial partipsiLHbM3
Lateral habenular nucleus medial part marginal subnucleusipsiLHbMMg2
Central subnucleus of the medial part of the lateral habenular nucleusipsiLHbMCe2
Lateral habenular nucleus oval subnucleusipsiLHbos0.5
Medial habenular nucleusipsiMHb2
Medial forebrain bundleipsimfb0.5
Midbrain periventricular fiber systemipsilftmpe1
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis lateral divisionipsiBSTL2
Bed nucleus of the stria terminalis medial divisionipsiBSTM1
Bed nucleus of the stria terminalis preoptic partipsiBSTPO2
Central amygdaloid nucleusipsiCe0
Anterior amygdaloid areaipsiAA2
Anterior cortical amygdaloid nucleusipsiACo2
Medial amygdaloid nucleusipsiMe2
Medial amygdaloid nucleus anterodorsal partipsiMeAD1
Medial amygdaloid nucleus posteroventral partipsiMePV1
Globus pallidusipsiGP0
Ventral pallidumipsiVP3
Accumbens nucleusipsiAc1
Medial coreipsiAcbCm1
Accumbens nucleus shellipsiAcbSh-0.5
Caudate putamenipsiCPu0
Dentate gyrusipsiDG1.5
Field CA1 of hippocampus ventral partipsiCA1v1
Caudal piriform cortex layer 3ipsiPirCL30.5
Retrosplenial agranular cortexipsiRSA1
Retrosplenial granular cortex subdivisionsipsiRSGsu1
Cingulate cortexipsiCg3
Cingulate cortex area 1ipsiCg13
Prelimbic cortexipsiPrL3
Infralimbic cortexipsiIL2
Frontal cortex area 2ipsiFr23
Agranular insular cortex posterior partipsiAIP1
Agranular insular cortex ventral partipsiAIV1
Dorsal peduncular cortexipsiDP3
Mid-dorsal peduncular cortexipsiMiDP1
Prefrontal cortexipsiPFC1
Ventral medial prefrontal cortexipsivmPFC-0.5
Orbital cortexipsiOrC-0.5
Medial orbital cortexipsiMO2
Ventral orbital cortexipsiVO2
Magnocellular nucleus of the posterior commissureipsiMCPC2
Nucleus of the posterior commissureipsiPCom3
Precommissural nucleusipsiPrC1
Intergeniculate leafipsiIGL0
Interpeduncular nucleusipsiIP3
Interpeduncular nucleus apical subnucleusipsiIPA0.5
Ventral margin of the apical interpeduncular nucleusipsiIPAV-0.5
Interpeduncular nucleus central subnucleusipsiIPRc1
Interpeduncular nucleus dorsolateral partipsiIPRdL3
Interpeduncular nucleus intermediate subnucleusipsiIPI3
Interpeduncular nucleus lateral halfipsiIPLh3
Interpeduncular nucleus lateral subnucleus medial halfipsiIPLm1
Interpeduncular nucleus rostral subnucleusipsiIPR3
Interpeduncular nucleus rostral subnucleus midrostrocaudal partipsiIPRmrc-0.5
Interpeduncular nucleus rostral subnucleus central partipsiIPRce3
Interpeduncular nucleus rostrocaudal axisipsiIPrca3
Interpeduncular nucleus dorsomedial partipsiIPdm3
Olfactory tubercleipsiTuO-0.5
Lateral septal nucleusipsiLS1
Lateral septal nucleus dorsal partipsiLSD0
Lateral septal nucleus intermediate partipsiLSI2
Lateral septal nucleus ventral partipsiLSV1
Septofimbrial nucleusipsiSFi1
Triangular septal nucleusipsiTS1
Septohypothalamic nucleusipsiSHy1
Trachea sideipsiOrgsTras1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications