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Rat connectome



Superior colliculus deep layers right


Abbreviation
SCd
Color       
Superior regionsSuperior colliculus intermediate and deep layers

SynonymsAbbr.Language
Superior colliculus deep layersSCdEng
Superior colliculus deep  
Superior colliculus profund layers  
Deep layers of the superior colliculus  
Colliculus superior stratum griseum profundunm Lat
Stratum griseum profundunm of the superior colliculus LL Eng
Superior colliculus deeper layers Eng
Stratum profundaSPEng
Superior colliculus deep layerSCDEng
Deep layers of the tectum Eng
Deep layers of the tectum Eng
Deep layers of superior colliculus Eng

SubregionsSide
Deep gray layer of the superior colliculusright
Deep white layer of the superior colliculusright
Superior colliculus deep layers caudal partright
Superior colliculus deep layers rostral partright
Superior colliculus deep layers lateral partright
Superior colliculus deep layers medial partright
Ventral region of deep layers of the superior colliculusright
Medial region of the superior colliculus deep layersright
Superior colliculus mediolateral deep layersright
Superior colliculus deep layers lateral central partsright

Output to

NameSideAbbr.WeightDetails
Central graycontraCG1
Periaqueductal graycontraPAG0
Ventrolateral periaqueductal graycontraVLPAG0
Inferior colliculuscontraICOL1
External cortex of the inferior colliculuscontraECIC1
Superior colliculus deep layerscontraSCd-0.5
Ventral tegmental area A10contraVTA3
Peripeduncular areacontraPPA2
Middle part of the retrorubral fieldcontraRRmi0
Ventrolateral tegmental areacontraVLTg1
Ventral tegmentum adjacent to mesencephalic periaqueductal graycontraTGAamPAG-0.5
Dorsal midbraincontraDMEC-0.5
PonscontraP0
Dorsomedial tegmental areacontraDMTg0
Intermediate reticular nucleuscontraIRt0
Paramedian reticular nucleuscontraPMn1
Reticular formation adjacent to the nucleus ambiguuscontraRFaA-0.5
Pontine reticular nucleuscontraPRN-0.5
Pontine reticular nucleus oral partcontraPnO1
Pontine reticular nucleus ventral partcontraPnV0
Pontine reticular nucleus caudal partcontraPNC3
Cuneiforme nucleuscontraCnF-0.5
Cuneiforme nucleus medial partcontraCnFm1
Parabrachial nucleus dorsal partcontraPBD1
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus alpha partcontraGiA1
Gigantocellular reticular nucleus ventral partcontraGiV1
Lateral reticular nucleuscontraLRt0
Medullary reticular nucleus dorsal partcontraMdDd0
Medullary reticular nucleus ventral partcontraMdV0.5
Parvicellular reticular nucleuscontraPCRt2
Parvicellular reticular nucleus alpha partcontraPCRtA0
Subcoeruleus nucleuscontraSubC0
Ambiguus nucleuscontraAmb-0.5
Abducens systemcontra6S2
Facial nucleuscontra71
Facial nucleus lateral subnucleuscontra7L1
Facial nucleus medial partcontra7M1
Motor trigeminal nucleuscontraMo50
Raphe nucleicontraRAN0
Raphe magnus nucleuscontraRMg1
Caudal medulla oblongatacontraCMeOb2
Inferior olivecontraIO1
Dorsal paragigantocellular nucleuscontraDPGi0
Lateral paragigantocellular nucleuscontraLPGi0
Supraoptic decussationcontrasox1
A8 dopamine cells retrorubral group lateral partcontraRRFL0
A8 dopamine cells retrorubral group medial partcontraRRFm3
Posterior intralaminar thalamic nucleuscontraPIL1
Subparafascicular thalamic nucleus caudal partcontraSPFc0.5
Subparafascicular thalamic nucleus medial partcontraSPFme0.5
Subparafascicular thalamic nucleus rostral partcontraSPFr0.5
Zona incertacontraZI2
Optic tractcontraopt-2
Ventral lateral geniculate nucleuscontraVLG0
Cervical segmentscontraCSeg-0.5
Cervical segment 1contraCS13
Spinal cord layer 5 C1contraSCL5C1-0.5
Spinal cord layer 6 C1contraSCL6C1-0.5
Spinal cord layer 7 C1contraSCL7C1-0.5
Spinal cord layer 8 C1contraSCL8C1-0.5
Cervical segment 2contraCS23
Spinal cord layer 5 C2contraSCL5C2-0.5
Spinal cord layer 6 C2contraSCL6C2-0.5
Spinal cord layer 7 C2contraSCL7C2-0.5
Spinal cord layer 8 C2contraSCL8C2-0.5
Cervical segment 3contraCS33
Spinal cord layer 5 C3contraSCL5C3-0.5
Spinal cord layer 6 C3contraSCL6C3-0.5
Spinal cord layer 7 C3contraSCL7C3-0.5
Spinal cord layer 8 C3contraSCL8C3-0.5
Intermediomedial cell column C4contraIMMC4-0.5
Spinal cord layer 5 C4contraSCL5C4-0.5
Spinal cord layer 6 C4contraSCL6C4-0.5
Spinal cord layer 7 C4contraSCL7C4-0.5
Spinal cord layer 8 C4contraSCL8C4-0.5
Intermediomedial cell column C5contraIMMC5-0.5
Spinal cord layer 5 C5contraSCL5C5-0.5
Spinal cord layer 6 C5contraSCL6C5-0.5
Spinal cord layer 7 C5contraSCL7C5-0.5
Spinal cord layer 8 C5contraSCL8C5-0.5
Spinal cord layer 5 C6contraSCL5C6-0.5
Spinal cord layer 6 C6contraSCL6C6-0.5
Spinal cord layer 7 C6contraSCL7C6-0.5
Spinal cord layer 8 C6contraSCL8C6-0.5
Spinal cord layer 5 C7contraSCL5C7-0.5
Spinal cord layer 6 C7contraSCL6C7-0.5
Spinal cord layer 7 C7contraSCL7C7-0.5
Spinal cord layer 8 C7contraSCL8C7-0.5
Spinal cord layer 5 C8contraSCL5C8-0.5
Spinal cord layer 6 C8contraSCL6C8-0.5
Spinal cord layer 7 C8contraSCL7C8-0.5
Spinal cord layer 8 C8contraSCL8C8-0.5
Central grayipsiCG3
Medial paralemniscal nucleusipsiMPL2
Nucleus of DarkschewitschipsiDk-0.5
Periaqueductal grayipsiPAG2
Dorsolateral periaqueductal grayipsiDLPAG-2
Ventrolateral periaqueductal grayipsiVLPAG2
Inferior colliculusipsiICOL3
Central nucleus of the inferior colliculusipsiCIC2
External cortex of the inferior colliculusipsiECIC2
Superior colliculusipsiSC-2
Superior colliculus superficial layersipsiSCs-0.5
Optic nerve layer of the superior colliculusipsiOp3
Anterior part of superior colliculus intermediate layersipsiASCi3
Substantia nigra compact partipsiSNC3
Substantia nigra medial partipsiSNM0.5
Substantia nigra reticular partipsiSNR2
Ventral tegmental area A10ipsiVTA3
Peripeduncular areaipsiPPA3
Middle part of the retrorubral fieldipsiRRmi3
Ventrolateral tegmental areaipsiVLTg3
Laterodorsal tegmental nucleusipsiLDTg2
Dorsal midbrainipsiDMEC-0.5
Paraflocculus ventral partipsiPFlv-0.5
FlocculusipsiFl-0.5
PonsipsiP3
Dorsomedial tegmental areaipsiDMTg0
Reticulotegmental nucleusipsiRETn2
Reticulotegmental nucleus of the ponsipsiRtTg1
Pontine nucleus medial partipsiBPNm1
Pontine nucleus ventral partipsiBPNv1
Dorsal reticular formationipsiDRF-0.5
Intermediate reticular nucleusipsiIRt0
Paramedian reticular nucleusipsiPMn0.5
Ventral mesencephalic reticular formationipsiMRFV2
Pontine reticular nucleusipsiPRN-0.5
Pontine reticular nucleus oral partipsiPnO3
Pontine reticular nucleus ventral partipsiPnV0.5
Pontine reticular nucleus caudal partipsiPNC2
Cuneiforme nucleus caudal partipsiCnFc2
Cuneiforme nucleus medial partipsiCnFm3
Parabrachial nucleus dorsal partipsiPBD3
Gigantocellular reticular nucleusipsiGi1
Gigantocellular reticular nucleus alpha partipsiGiA1
Gigantocellular reticular nucleus ventral partipsiGiV1
Gigantocellular reticular nucleus ventromedial partipsiGiVM1
Lateral reticular nucleusipsiLRt0.5
Medullary reticular nucleus dorsal partipsiMdDd0.5
Medullary reticular nucleus ventral partipsiMdV0.5
Parvicellular reticular nucleusipsiPCRt-0.5
Parvicellular reticular nucleus alpha partipsiPCRtA0
Subcoeruleus nucleusipsiSubC1
Facial nucleusipsi70.5
Hypoglossal nucleusipsi12S0.5
Motor trigeminal nucleusipsiMo50
Principal sensory trigeminal nucleusipsiPr5-0.5
Spinal trigeminal nucleus interpolar partipsiSp5I-0.5
Ventromedial part of the junction of principal trigeminal nucleus and spinal trigeminal nucleus oral partipsiPr5JSp5Ovm-0.5
Raphe nucleiipsiRAN2
Nucleus raphe alatusipsiRANA1
Raphe magnus nucleusipsiRMg1
Inferior oliveipsiIO2
Dorsal paragigantocellular nucleusipsiDPGi0
Lateral paragigantocellular nucleusipsiLPGi1
HypothalamusipsiHYPO-0.5
Lateral hypothalamic area ventral partipsiLHAvp-0.5
Anterior hypothalamic area ventral partipsiAHAve-0.5
Supraoptic decussationipsisox2
Nucleus properipsiSOnP-0.5
A8 dopamine cells retrorubral group lateral partipsiRRFL3
A8 dopamine cells retrorubral group medial partipsiRRFm3
Retrochiasmatic areaipsiRCh-0.5
Central medial thalamic nucleusipsiCM3
Centrolateral thalamic nucleusipsiCL3
Parafascicular thalamic nucleusipsiPF-0.5
Parafascicular thalamic nucleus prerubral partipsiPFPR-0.5
Posterior thalamic nuclear groupipsiPo2
Posterior thalamic nuclear group dorsocaudal partipsiPoDC1
Suprageniculate thalamic nucleusipsiSG3
Caudal suprageniculate thalamic nucleusipsiCSG-0.5
Ventral part of the rostral suprageniculate thalamic nucleusipsiVeRSG3
Dorsal suprageniculate thalamic nucleusipsiSGD3
Mediodorsal thalamic nucleusipsiMD2
Mediodorsal thalamic nucleus medial partipsiMDM3
Reuniens thalamic nucleusipsiRe1
Ventral posterolateral thalamic nucleus posterior partipsiVPLP1
Medial part of ventral posteromedial thalamic nucleusipsiVPMm1
Intralaminar nucleiipsiILN1
Parafascicular nucleusipsiPFa1
Lateral thalamic nuclear groupipsiLTNG-0.5
Lateral posterior thalamic nucleusipsiLP0.5
Rostromedial lateral posterior thalamic nucleusipsiLPrm-0.5
Laterodorsal thalamic nucleusipsiLD-0.5
Reticular thalamic nucleusipsiRt-0.5
Reticular thalamic nucleus lateral partipsiRtL1
Subparafascicular thalamic nucleus caudal partipsiSPFc2
Subparafascicular thalamic nucleus medial partipsiSPFme2
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Zona incertaipsiZI3
Zona incerta ventral part lateral partipsiZIVL3
Pretectal regionipsiPRT2
Subthalamic nucleusipsiSTh2.5
Forelimb motor cortexipsiFMCx1
Caudal forelimb motor areaipsiCFMA1
Lateral part of the granular cortex of forelimb motor regionsipsiLFMCx1
Dorsal geniculate nucleus lateral partipsiDLGl3
Ventral lateral geniculate nucleusipsiVLG3
Medial geniculate nucleus medial partipsiMGM3
Cervical segment 1ipsiCS11
Spinal cord layers C1ipsiSCLC11
Cervical segment 2ipsiCS21
Spinal cord layers C2ipsiSCLC21
Cervical segment 3ipsiCS3-0.5
Spinal cord layers C3ipsiSCLC31
Cervical segment 4ipsiCS4-0.5
Spinal cord layers C4ipsiSCLC41
Spinal cord layers C5ipsiSCLC51
Spinal cord layers C6ipsiSCLC61
Spinal cord layer 9 C6ipsiSCL9C6-0.5
Spinal cord layers C7ipsiSCLC71
Spinal cord layer 9 C7ipsiSCL9C7-0.5
Spinal cord layers C8ipsiSCLC81
Spinal cord layer 9 C8ipsiSCL9C8-0.5
Spinal cord layer 9 T1ipsiSCL9T1-0.5
Orbicularis oculi musclecontraMuscOrbOc-0.5
Orbicularis oculi muscleipsiMuscOrbOc-0.5

Input from

NameSideAbbr.WeightDetails
Dorsal nucleus of the lateral lemniscuscontraDLL3
Periaqueductal graycontraPAG0.5
Dorsal periaqueductal gray caudal partcontraDPAGC0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Dorsolateral periaqueductal gray rostral partcontraPAGdlr1
Ventrolateral periaqueductal gray caudal partcontraPAGvlc1
Ventrolateral periaqueductal gray rostral partcontraPAGvlr1
Superior colliculuscontraSC1
Superior colliculus deep layerscontraSCd-0.5
Substantia nigra reticular partcontraSNR-0.5
Substantia nigra reticular part ventrolateral tiercontraSNRVL-0.5
Substantia nigra reticular part ventromedial tiercontraSNRVM-0.5
Ventrolateral tegmental areacontraVLTg1
Laterodorsal tegmental nucleuscontraLDTg3
Dorsal tegmental nucleuscontraDTg1
Dorsal tegmental nucleus lateral partcontraDLTN1
Dorsolateral humpcontraCERcndl0
Anterior interposed nucleuscontraAIN2
Posterior interposed nucleuscontraCERpin2
Lateral cerebellar nucleuscontraCERL2
Lateral cerebellar nucleus central part ventral partcontraCERLcv3
Medial cerebellar nucleuscontraMed2
Medial cerebellar nucleus caudal partcontraMedc2
Cuneiforme nucleuscontraCnF3
Cuneiforme nucleus dorsal partcontraCnFD-0.5
Gigantocellular reticular nucleus alpha partcontraGiA-0.5
Supratrigeminal nucleuscontraSu50
Spinal trigeminal nucleus interpolar partcontraSp5I-0.5
Spinal trigeminal nucleus oral partcontraSp5O3
Cochlear root of the vestibulocochlear nervecontra8cn-0.5
Cochlear root neuronscontraCORN2
Spinal vestibular nucleuscontraSpVe1
Dorsal column nucleicontraDCN-0.5
Tuberomammillary nucleuscontraTuM2
Tuberal nucleuscontraTU0.5
Ventromedial hypothalamic nucleus anterior partcontraVMHA1.5
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL0.5
Premammillary nucleus dorsal partcontraPMD1
Lateral posterior thalamic nucleuscontraLP-0.5
RetinacontraRET-0.5
Central amygdaloid nucleuscontraCe0.5
Prelimbic cortex rostral partcontraPrLr-0.5
Lateral spinal nucleuscontraMESLn-0.5
Spinal cord lamina 10contraMESL10-0.5
Spinal cord lamina 4contraMESL4-0.5
Spinal cord lamina 5contraMESL5-0.5
Spinal cord lamina 7contraMESL7-0.5
Spinal cord lamina 1contraMESL1-0.5
Spinal cord lamina 2contraMESL2-0.5
Spinal cord layer 5 C1contraSCL5C1-0.5
Spinal cord layer 3 C1contraSCL3C1-0.5
Spinal cord layer 1 C1contraSCL1C1-0.5
Spinal cord layer 7 C1contraSCL7C1-0.5
Spinal cord layer 8 C1contraSCL8C1-0.5
Spinal cord layer 5 C2contraSCL5C2-0.5
Spinal cord layer 3 C2contraSCL3C2-0.5
Spinal cord layer 1 C2contraSCL1C2-0.5
Spinal cord layer 7 C2contraSCL7C2-0.5
Spinal cord layer 8 C2contraSCL8C2-0.5
Spinal cord layer 5 C3contraSCL5C3-0.5
Spinal cord layer 3 C3contraSCL3C3-0.5
Spinal cord layer 1 C3contraSCL1C3-0.5
Spinal cord layer 7 C3contraSCL7C3-0.5
Spinal cord layer 8 C3contraSCL8C3-0.5
Spinal cord layer 5 C4contraSCL5C4-0.5
Spinal cord layer 3 C4contraSCL3C4-0.5
Spinal cord layer 1 C4contraSCL1C4-0.5
Spinal cord layer 7 C4contraSCL7C4-0.5
Spinal cord layer 8 C4contraSCL8C4-0.5
Spinal cord layer 5 C5contraSCL5C5-0.5
Spinal cord layer 3 C5contraSCL3C5-0.5
Spinal cord layer 1 C5contraSCL1C5-0.5
Spinal cord layer 7 C5contraSCL7C5-0.5
Spinal cord layer 8 C5contraSCL8C5-0.5
Spinal cord layer 5 C6contraSCL5C6-0.5
Spinal cord layer 3 C6contraSCL3C6-0.5
Spinal cord layer 1 C6contraSCL1C6-0.5
Spinal cord layer 7 C6contraSCL7C6-0.5
Spinal cord layer 8 C6contraSCL8C6-0.5
Spinal cord layer 5 C7contraSCL5C7-0.5
Spinal cord layer 3 C7contraSCL3C7-0.5
Spinal cord layer 1 C7contraSCL1C7-0.5
Spinal cord layer 7 C7contraSCL7C7-0.5
Spinal cord layer 8 C7contraSCL8C7-0.5
Spinal cord layer 5 C8contraSCL5C8-0.5
Spinal cord layer 3 C8contraSCL3C8-0.5
Spinal cord layer 1 C8contraSCL1C8-0.5
Spinal cord layer 7 C8contraSCL7C8-0.5
Spinal cord layer 8 C8contraSCL8C8-0.5
Spinal cord layer 5 T1contraSCL5T1-0.5
Spinal cord layer 3 T1contraSCL3T1-0.5
Spinal cord layer 1 T1contraSCL1T1-0.5
Spinal cord layer 7 T1contraSCL7T1-0.5
Spinal cord layer 8 T1contraSCL8T1-0.5
Spinal cord layer 5 T2contraSCL5T2-0.5
Spinal cord layer 3 T2contraSCL3T2-0.5
Spinal cord layer 1 T2contraSCL1T2-0.5
Spinal cord layer 7 T2contraSCL7T2-0.5
Spinal cord layer 8 T2contraSCL8T2-0.5
Spinal cord layer 5 T3contraSCL5T3-0.5
Spinal cord layer 3 T3contraSCL3T3-0.5
Spinal cord layer 1 T3contraSCL1T3-0.5
Spinal cord layer 7 T3contraSCL7T3-0.5
Spinal cord layer 8 T3contraSCL8T3-0.5
Spinal cord layer 5 T4contraSCL5T4-0.5
Spinal cord layer 3 T4contraSCL3T4-0.5
Spinal cord layer 1 T4contraSCL1T4-0.5
Spinal cord layer 7 T4contraSCL7T4-0.5
Spinal cord layer 8 T4contraSCL8T4-0.5
Spinal cord layer 5 T5contraSCL5T5-0.5
Spinal cord layer 3 T5contraSCL3T5-0.5
Spinal cord layer 1 T5contraSCL1T5-0.5
Spinal cord layer 7 T5contraSCL7T5-0.5
Spinal cord layer 8 T5contraSCL8T5-0.5
Spinal cord layer 5 T6contraSCL5T6-0.5
Spinal cord layer 3 T6contraSCL3T6-0.5
Spinal cord layer 1 T6contraSCL1T6-0.5
Spinal cord layer 7 T6contraSCL7T6-0.5
Spinal cord layer 8 T6contraSCL8T6-0.5
Spinal cord layer 5 T7contraSCL5T7-0.5
Spinal cord layer 3 T7contraSCL3T7-0.5
Spinal cord layer 1 T7contraSCL1T7-0.5
Spinal cord layer 7 T7contraSCL7T7-0.5
Spinal cord layer 8 T7contraSCL8T7-0.5
Spinal cord layer 5 T8contraSCL5T8-0.5
Spinal cord layer 3 T8contraSCL3T8-0.5
Spinal cord layer 1 T8contraSCL1T8-0.5
Spinal cord layer 7 T8contraSCL7T8-0.5
Spinal cord layer 8 T8contraSCL8T8-0.5
Spinal cord layer 5 T9contraSCL5T9-0.5
Spinal cord layer 3 T9contraSCL3T9-0.5
Spinal cord layer 1 T9contraSCL1T9-0.5
Spinal cord layer 7 T9contraSCL7T9-0.5
Spinal cord layer 8 T9contraSCL8T9-0.5
Spinal cord layer 5 T10contraSCL5T10-0.5
Spinal cord layer 3 T10contraSCL3T10-0.5
Spinal cord layer 1 T10contraSCL1T10-0.5
Spinal cord layer 7 T10contraSCL7T10-0.5
Spinal cord layer 8 T10contraSCL8T10-0.5
Spinal cord layer 5 T11contraSCL5T11-0.5
Spinal cord layer 3 T11contraSCL3T11-0.5
Spinal cord layer 1 T11contraSCL1T11-0.5
Spinal cord layer 7 T11contraSCL7T11-0.5
Spinal cord layer 8 T11contraSCL8T11-0.5
Spinal cord layer 5 T12contraSCL5T12-0.5
Spinal cord layer 3 T12contraSCL3T12-0.5
Spinal cord layer 1 T12contraSCL1T12-0.5
Spinal cord layer 7 T12contraSCL7T12-0.5
Spinal cord layer 8 T12contraSCL8T12-0.5
Spinal cord layer 5 T13contraSCL5T13-0.5
Spinal cord layer 3 T13contraSCL3T13-0.5
Spinal cord layer 1 T13contraSCL1T13-0.5
Spinal cord layer 7 T13contraSCL7T13-0.5
Spinal cord layer 8 T13contraSCL8T13-0.5
Spinal cord layer 5 L1contraSCL5L1-0.5
Spinal cord layer 3 L1contraSCL3L1-0.5
Spinal cord layer 1 L1contraSCL1L1-0.5
Spinal cord layer 7 L1contraSCL7L1-0.5
Spinal cord layer 8 L1contraSCL8L1-0.5
Spinal cord layer 5 L2contraSCL5L2-0.5
Spinal cord layer 3 L2contraSCL3L2-0.5
Spinal cord layer 1 L2contraSCL1L2-0.5
Spinal cord layer 7 L2contraSCL7L2-0.5
Spinal cord layer 8 L2contraSCL8L2-0.5
Spinal cord layer 5 L3contraSCL5L3-0.5
Spinal cord layer 3 L3contraSCL3L3-0.5
Spinal cord layer 1 L3contraSCL1L3-0.5
Spinal cord layer 7 L3contraSCL7L3-0.5
Spinal cord layer 8 L3contraSCL8L3-0.5
Spinal cord layer 5 L4contraSCL5L4-0.5
Spinal cord layer 3 L4contraSCL3L4-0.5
Spinal cord layer 1 L4contraSCL1L4-0.5
Spinal cord layer 7 L4contraSCL7L4-0.5
Spinal cord layer 8 L4contraSCL8L4-0.5
Spinal cord layer 5 L5contraSCL5L5-0.5
Spinal cord layer 3 L5contraSCL3L5-0.5
Spinal cord layer 1 L5contraSCL1L5-0.5
Spinal cord layer 7 L5contraSCL7L5-0.5
Spinal cord layer 8 L5contraSCL8L5-0.5
Spinal cord layer 5 L6contraSCL5L6-0.5
Spinal cord layer 3 L6contraSCL3L6-0.5
Spinal cord layer 1 L6contraSCL1L6-0.5
Spinal cord layer 7 L6contraSCL7L6-0.5
Spinal cord layer 8 L6contraSCL8L6-0.5
Spinal cord layer 5 S1contraSCL5S1-0.5
Spinal cord layer 3 S1contraSCL3S1-0.5
Spinal cord layer 1 S1contraSCL1S1-0.5
Spinal cord layer 7 S1contraSCL7S1-0.5
Spinal cord layer 8 S1contraSCL8S1-0.5
Spinal cord layer 5 S2contraSCL5S2-0.5
Spinal cord layer 3 S2contraSCL3S2-0.5
Spinal cord layer 1 S2contraSCL1S2-0.5
Spinal cord layer 7 S2contraSCL7S2-0.5
Spinal cord layer 8 S2contraSCL8S2-0.5
Spinal cord layer 5 S3contraSCL5S3-0.5
Spinal cord layer 3 S3contraSCL3S3-0.5
Spinal cord layer 1 S3contraSCL1S3-0.5
Spinal cord layer 7 S3contraSCL7S3-0.5
Spinal cord layer 8 S3contraSCL8S3-0.5
Spinal cord layer 5 S4contraSCL5S4-0.5
Spinal cord layer 3 S4contraSCL3S4-0.5
Spinal cord layer 1 S4contraSCL1S4-0.5
Spinal cord layer 7 S4contraSCL7S4-0.5
Spinal cord layer 8 S4contraSCL8S4-0.5
Spinal cord layer 5 Co1contraSCL5Co1-0.5
Spinal cord layer 3 Co1contraSCL3Co1-0.5
Spinal cord layer 1 Co1contraSCL1Co1-0.5
Spinal cord layer 7 Co1contraSCL7Co1-0.5
Spinal cord layer 8 Co1contraSCL8Co1-0.5
Spinal cord layer 5 Co2contraSCL5Co2-0.5
Spinal cord layer 3 Co2contraSCL3Co2-0.5
Spinal cord layer 1 Co2contraSCL1Co2-0.5
Spinal cord layer 7 Co2contraSCL7Co2-0.5
Spinal cord layer 8 Co2contraSCL8Co2-0.5
Spinal cord layer 5 Co3contraSCL5Co3-0.5
Spinal cord layer 3 Co3contraSCL3Co3-0.5
Spinal cord layer 1 Co3contraSCL1Co3-0.5
Spinal cord layer 7 Co3contraSCL7Co3-0.5
Spinal cord layer 8 Co3contraSCL8Co3-0.5
Central gray dorsoventral partipsiCGDV-2
Dorsal nucleus of the lateral lemniscusipsiDLL3
Periaqueductal grayipsiPAG0.5
Dorsal periaqueductal gray caudal partipsiDPAGC0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0.5
Dorsolateral periaqueductal gray rostral partipsiPAGdlr1
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr1
Inferior colliculusipsiICOL3
External cortex of the inferior colliculusipsiECIC-1
External cortex of the inferior colliculus rostral partipsiECICr3
Inferior colliculus medial partipsiICOLm-2
Superior colliculusipsiSC3
Most caudal part of the superior colliculusipsimcSC3
Superior colliculus superficial layersipsiSCs-0.5
Superficial gray layer of the superior colliculus lower thirdipsiSuGLt-0.5
Superior colliculus zonal layeripsiSCzo-0.5
Superior colliculus superficial layers ventromedial partipsiSCsvm0.5
Dorsal midbrain tectumipsiTECd-0.5
Substantia nigra A9ipsiSN3
Substantia nigra caudolateral partipsiSNcL2
Substantia nigra compact partipsiSNC-0.5
Substantia nigra reticular partipsiSNR0.5
Substantia nigra reticular part dorsoventral partipsiSNRdv3
Substantia nigra reticular part lateral tieripsiSNRL-0.5
Substantia nigra reticular part mediolateral partipsiSNRmL2
Substantia nigra reticular part ventrolateral tieripsiSNRVL-0.5
Substantia nigra reticular part ventromedial tieripsiSNRVM-0.5
Ventrolateral tegmental areaipsiVLTg3
Laterodorsal tegmental nucleusipsiLDTg3
Dorsal tegmental nucleusipsiDTg2
Dorsal tegmental nucleus lateral partipsiDLTN2
Pedunculopontine tegmental nucleus pars compactaipsiPPNC-1
Edinger Westphal nucleusipsiEW2
Dorsolateral humpipsiCERcndl0
Deep cerebellar nucleiipsiDNC1
Anterior interposed nucleusipsiAIN0
Posterior interposed nucleusipsiCERpin0
Lateral cerebellar nucleusipsiCERL1
Medial cerebellar nucleusipsiMed0
Mesencephalic reticular formationipsiMRF-2
Deep mesencephalic nucleusipsiDpMe1
Cuneiforme nucleusipsiCnF3
Gigantocellular reticular nucleusipsiGi-0.5
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Supratrigeminal nucleusipsiSu50
Principal sensory trigeminal nucleus ventral partipsiPr5v2
Spinal trigeminal nucleus caudal partipsiSp5C1
Spinal trigeminal nucleus interpolar partipsiSp5I2
Spinal trigeminal nucleus oral partipsiSp5O2
Cochlear root neuronsipsiCORN-0.5
Dorsal raphe nucleus dorsal partipsiDRD-0.5
Raphe magnus nucleusipsiRMg0
Raphe obscurus nucleusipsiROb0
Raphe pallidus nucleusipsiRPa0
Dorsal column nucleiipsiDCN2
Cuneate nucleusipsiCu4
Olivary pretectal nucleusipsiOPT2
Superior paraolivary nucleusipsiSPO-2
Paragigantocellular reticular nucleusipsiPGi1
Tuberomammillary nucleusipsiTuM3
Lateral hypothalamic areaipsiLH1
Tuberal division of the lateral hypothalamic areaipsiLHTC-0.5
Tuberal nucleusipsiTU1
Anterior hypothalamic area posterior partipsiAHAP1
Anterior hypothalamic nucleusipsiAHn-0.5
Ventromedial hypothalamic nucleus anterior partipsiVMHA3
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1
Premammillary nucleus dorsal partipsiPMD2
ThalamusipsiT-0.5
Dorsal part of the lateral geniculate complexipsiLGd2
Ventral part of the lateral geniculate complexipsiLGv2
Suprageniculate thalamic nucleusipsiSG-1
Posterior intralaminar thalamic nucleusipsiPIL2
Lateral posterior thalamic nucleusipsiLP-0.5
Lateral posterior thalamic nucleus mediocaudal partipsiLPMC2
Laterodorsal thalamic nucleusipsiLD2
Posterior groupipsiPTG3
Ventral thalamusipsiVNT-0.5
Reticular thalamic nucleusipsiRt2
Reticular thalamic nucleus rostrocaudal partipsiRtrc1
Subparafascicular thalamic nucleusipsiSPF2
Zona incertaipsiZI3
Zona incerta dorsal partipsiZID-0.5
Zona incerta ventral partipsiZIV2
Nucleus of the optic tractipsiOT2
RetinaipsiRET3
Central amygdaloid nucleusipsiCe1
Central amygdaloid nucleus lateral divisionipsiCeL0.5
Central amygdaloid nucleus medial division rostral partipsiCeMR1
Field CA3 of hippocampusipsiCA32
Retrosplenial cortexipsiRSCx-0.5
Retrosplenial agranular cortexipsiRSA3
Cingulate cortexipsiCg1
Anterior cingulate cortexipsiACC1
Cingulate cortex area 1 layer 5ipsiCg1L53
Prelimbic cortex rostral partipsiPrLr-0.5
Infralimbic cortexipsiIL0
Frontal cortex area 2ipsiFr21
Temporal association area 2ipsiTe2-0.5
Temporal association area 2 dorsal partipsiTe2D1.5
Ventral temporal association cortexipsiTev1
Auditory regionsipsiAU-0.5
Forelimb motor cortexipsiFMCx1
Caudal forelimb motor areaipsiCFMA1
Lateral part of the granular cortex of forelimb motor regionsipsiLFMCx1
Rostral part of lateral agranular prefrontal cortex layer 5ipsiAGlrL5-0.5
Whiskers motor cortexipsiWMCx3
Medial prefrontal cortexipsimPFC1.5
Medial agranular prefrontal cortexipsiAGm1
Medial agranular prefrontal cortex caudal part layer 5ipsicAGmL51
Medial agranular prefrontal cortex layer 5ipsiAGmL52
Medial agranular prefrontal cortex medial part layer 5ipsimAGmL52
Medial agranular prefrontal cortex rostral part layer 5ipsirAGmL52
Sensory regionsipsiSR-0.5
Posteromedial barrel subfield C2ipsiPMBSFC23
Posteromedial barrel subfield D1ipsiPMBSFD13
Posteromedial barrel subfield D2ipsiPMBSFD23
Posteromedial barrel subfield D5ipsiPMBSFD53
Central dysgranular zone between E4 whisker and forelimb barrel field layers 5ipsiS1BFcdysL52
Central dysgranular zone between E4 whisker and forelimb barrel field layers 6ipsiS1BFcdysL62
Posterior dygranular zone between whisker and trunk representation layer 5ipsiS1pdyL52
Posterior dygranular zone between whisker and trunk representation layer 6ipsiS1pdyL62
Primary visual cortexipsiV1-0.5
Secondary visual cortexipsiV2-0.5
Medial extrastriate cortexipsiVISM2
Nucleus of the posterior commissureipsiPCom2
Ventral lateral geniculate nucleusipsiVLG3
Ventral lateral geniculate nucleus lateral partipsiVLGl3
Medial geniculate nucleusipsiMG-1
Medial geniculate nucleus dorsal partipsiMGD-1
Medial geniculate nucleus dorsal part medial subdivisionipsiMGDm-1
Medial geniculate nucleus medial partipsiMGM3
Lateral septal nucleus ventral partipsiLSV1
Spinal cord layer 1 C1ipsiSCL1C11.5
Spinal cord layer 2 C1ipsiSCL2C11.5
Spinal cord layer 1 C2ipsiSCL1C21.5
Spinal cord layer 2 C2ipsiSCL2C21.5
Spinal cord layer 1 C3ipsiSCL1C31.5
Spinal cord layer 2 C3ipsiSCL2C31.5
Spinal cord layer 1 C4ipsiSCL1C41.5
Spinal cord layer 2 C4ipsiSCL2C41.5
Spinal cord layer 1 C5ipsiSCL1C51.5
Spinal cord layer 2 C5ipsiSCL2C51.5
Spinal cord layer 1 C6ipsiSCL1C61.5
Spinal cord layer 2 C6ipsiSCL2C61.5
Spinal cord layer 1 C7ipsiSCL1C71.5
Spinal cord layer 2 C7ipsiSCL2C71.5
Spinal cord layer 1 C8ipsiSCL1C81.5
Spinal cord layer 2 C8ipsiSCL2C81.5
Spinal cord layer 1 T1ipsiSCL1T11.5
Spinal cord layer 2 T1ipsiSCL2T11.5
Spinal cord layer 1 T2ipsiSCL1T21.5
Spinal cord layer 2 T2ipsiSCL2T21.5
Spinal cord layer 1 T3ipsiSCL1T31.5
Spinal cord layer 2 T3ipsiSCL2T31.5
Spinal cord layer 1 T4ipsiSCL1T41.5
Spinal cord layer 2 T4ipsiSCL2T41.5
Spinal cord layer 1 T5ipsiSCL1T51.5
Spinal cord layer 2 T5ipsiSCL2T51.5
Spinal cord layer 1 T6ipsiSCL1T61.5
Spinal cord layer 2 T6ipsiSCL2T61.5
Spinal cord layer 1 T7ipsiSCL1T71.5
Spinal cord layer 2 T7ipsiSCL2T71.5
Spinal cord layer 1 T8ipsiSCL1T81.5
Spinal cord layer 2 T8ipsiSCL2T81.5
Spinal cord layer 1 T9ipsiSCL1T91.5
Spinal cord layer 2 T9ipsiSCL2T91.5
Spinal cord layer 1 T10ipsiSCL1T101.5
Spinal cord layer 2 T10ipsiSCL2T101.5
Spinal cord layer 1 T11ipsiSCL1T111.5
Spinal cord layer 2 T11ipsiSCL2T111.5
Spinal cord layer 1 T12ipsiSCL1T121.5
Spinal cord layer 2 T12ipsiSCL2T121.5
Spinal cord layer 1 T13ipsiSCL1T131.5
Spinal cord layer 2 T13ipsiSCL2T131.5
Spinal cord layer 1 L1ipsiSCL1L11.5
Spinal cord layer 2 L1ipsiSCL2L11.5
Spinal cord layer 1 L2ipsiSCL1L21.5
Spinal cord layer 2 L2ipsiSCL2L21.5
Dorsal horn L3ipsiDHL3-0.5
Spinal cord layer 1 L3ipsiSCL1L31.5
Spinal cord layer 2 L3ipsiSCL2L31.5
Ventral horn L3ipsiVHL3-0.5
Dorsal horn L4ipsiDHL4-0.5
Spinal cord layer 1 L4ipsiSCL1L41.5
Spinal cord layer 2 L4ipsiSCL2L41.5
Ventral horn L4ipsiVHL4-0.5
Dorsal horn L5ipsiDHL5-0.5
Spinal cord layer 1 L5ipsiSCL1L51.5
Spinal cord layer 2 L5ipsiSCL2L51.5
Ventral horn L5ipsiVHL5-0.5
Dorsal horn L6ipsiDHL6-0.5
Spinal cord layer 1 L6ipsiSCL1L61.5
Spinal cord layer 2 L6ipsiSCL2L61.5
Ventral horn L6ipsiVHL6-0.5
Dorsal horn S1ipsiDHS1-0.5
Spinal cord layer 1 S1ipsiSCL1S11.5
Spinal cord layer 2 S1ipsiSCL2S11.5
Ventral horn S1ipsiVHSa1-0.5
Dorsal horn S2ipsiDHS2-0.5
Spinal cord layer 1 S2ipsiSCL1S21.5
Spinal cord layer 2 S2ipsiSCL2S21.5
Ventral horn S2ipsiVHSa2-0.5
Spinal cord layer 1 S3ipsiSCL1S31.5
Spinal cord layer 2 S3ipsiSCL2S31.5
Spinal cord layer 1 S4ipsiSCL1S41.5
Spinal cord layer 2 S4ipsiSCL2S41.5
Fascial vibrissal follicle complexescontraFVFC2
Rapidly adapting hair folliclecontraRHaFo2
Guard haircontraOrgGuH0.5
Vitreous humor of eyeipsiOrgVHEye3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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